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2008

[bibtex]
G. Adluru, E.V.R. DiBella, C.J. McGann. “Data Acquisition and Reconstruction of Undersampled Radial MR Myocardial Perfusion,” In Proceedings of the 11th Annual Scientific Sessions of the Society for Cardiovascular Magnetic Resonance (SCMR) 2008, pp. 215. 2008.
Versions Available: [pdf]



[bibtex]
G. Adluru, E.V.R. DiBella. “A Comparison of L1 and L2 Norms as Temporal Constraints for Reconstruction of Undersampled Dynamic Contrast Enhanced Cardiac Scans with Respiratory Motion,” In Proceedings of the 16th Scientific Meeting & Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM) 2008, pp. 340. 2008.
Versions Available: [pdf]



[bibtex]
G. Adluru, E.V.R. DiBella. “Data Reordering for Improved Constrained Reconstruction from Undersampled k-space Data,” In Proceedings of the 16th Scientific Meeting & Exhibition of the International Society for Magnetic Resonance in Medicine (ISMRM) 2008, pp. 3153. 2008.
Versions Available: [pdf]



[bibtex]
L. Bavoil, S. Callahan,, C. Silva. “Robust Soft Shadow Mapping with Depth Peeling,” In Journal of Graphics Tools, pp. (to appear). 2008.



[bibtex]
Note: BioFEM: A SCIRun PowerApp that computes the electric field in a volume produced by a set of dipoles. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008.
Versions Available: [html]



[bibtex]
Note: BioImage: A SCIRun Power App for processing and visualizing medical image volumes. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/index.html, 2008.
Versions Available: [html]



[bibtex]
Note: BioPSE: Problem Solving Environment for modeling, simulation, image processing, and visualization for biomedical computing applications. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008.
Versions Available: [html]



[bibtex]
Note: BioTensor: A SCIRun Power App for processing and visualizing diffusion tensor images. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008.
Versions Available: [html]



[bibtex]
K. Buerger, P. Kondratieva, J. Krueger, R. Westermann. “Importance-Driven Particle Techniques for Flow Visualization,” In Proceedings of IEEE VGTC PacificVis 2008, pp. (accepted). 2008.
Versions Available: [pdf]



[bibtex]
S.P. Callahan, J.H. Callahan, C.E. Scheidegger, C. Silva. “Direct Volume Rendering: A 3D Plotting Technique for Scientific Data,” In Computing in Science and Engineering, Vol. 10, No. 1, pp. 88--92. 2008.



[bibtex]
Note: Data Sets: NCRR Center for Integrative Biomedical Computing (CIBC) data set archive. Download from: http://www.sci.utah.edu/cibc/software/login_datasets.html, 2008.
Versions Available: [html]



[bibtex]
J. Freire, C. Silva. “Towards Enabling Social Analysis of Scientific Data,” In Proceedings of CHI Social Data Analysis Workshop 2008, pp. (to appear). 2008.



[bibtex]
Note: FusionView: Problem Solving Environment for MHD Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://software.sci.utah.edu/fusion.html, 2008.
Versions Available: [html]



[bibtex]
S.E. Geneser, R.M. Kirby. “Application of Stochastic Finite Element Methods to Study the Sensitivity of ECG Forward Modeling to Organ Conductivity,” In IEEE Transations on Biomedical Engineering, Vol. 55, No. 1, pp. 31--40. January, 2008.
Versions Available: [pdf]



[bibtex]
M. Jolley, J. Stinstra, S. Pieper, R.S. MacLeod, D.H. Brooks, F. Cecchin, J.K. Triedman. “A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults,” In Heart Rhythm, Vol. 5, No. 4, pp. 565--572. April, 2008.
Versions Available: [pdf]



[bibtex]
E. Jurrus, M. Hardy, T. Tasdizen, P.T. Fletcher, P. Koshevoy, C.-B. Chien, W. Denk, R.T. Whitaker. “Axon Tracking in Serial Block-Face Scanning Electron Microscopy,” In Medical Image Analysis (MEDIA), Special Issue on MIAAB, Elsevier, pp. (accepted). 2008.



[bibtex]
E. Jurrus, R.T. Whitaker, B. Jones, R. Marc, T. Tasdizen. “An Optimal-Path Approach for Neural Circuit Reconstruction,” In Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. (accepted). 2008.



[bibtex]
A. Kensler, A. Knoll, P. Shirley. “Better Gradient Noise,” SCI Institute Technical Report, No. UUSCI-2008-001, University of Utah, 2008.
Versions Available: [pdf]



[bibtex]
A. Knoll, I. Wald, C.D. Hansen. “Coherent Multiresolution Isosurface Ray Tracing,” In The Visual Computer, pp. (to appear). 2008.



[bibtex]
G.-S. Li, X. Tricoche, D. Weiskopf, C.D. Hansen. “Flow Charts: Visualization of Vector Fields on Arbitrary Surfaces,” In IEEE Transactions on Visualization and Computer Graphics, pp. (accepted). 2008.



[bibtex]
Note: map3d: Interactive scientific visualization tool for bioengineering data. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/map3d.html, 2008.
Versions Available: [html]



[bibtex]
E.P. Newren, A.L. Fogelson, R.D. Guy, R.M. Kirby. “A Comparison of Implicit Solvers for the Immersed Boundary Equations,” In Computer Methods in Applied Mechanics and Engineering, pp. (accepted). 2008.



[bibtex]
A.R. Sanderson, M.D. Meyer, R.M. Kirby, C.R. Johnson. “A Framework for Exploring Numerical Solutions of Advection-Reaction-Diffusion Equations Using a GPU-Based Approach,” In Computing and Visualization in Science, published online, 2008.
ISSN: 1432-9360
Versions Available: [pdf]



[bibtex]
Note: Scientific Computing and Imaging Institute (SCI), University of Utah, www.sci.utah.edu, 2008.
Versions Available: [html]



[bibtex]
Note: SCIRun: A Scientific Computing Problem Solving Environment, Scientific Computing and Imaging Institute (SCI), Download from: http://software.sci.utah.edu/scirun.html, 2008.
Versions Available: [html]



[bibtex]
Note: Seg3D: Volumetric Image Segmentation and Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008.
Versions Available: [html]



[bibtex]
M. Steffen, S. Curtis, R.M. Kirby, J.K. Ryan. “Investigation of Smoothness-Increasing Accuracy-Conserving Filters for Improving Streamline Integration Through Discontinuous Fields,” In IEEE Transactions on Visualization and Computer Graphics, Vol. 14, No. 3, pp. 680--692. 2008.
Versions Available: [pdf]



[bibtex]
M. Steffen, R.M. Kirby, M. Berzins. “Analysis and Reduction of Quadrature Errors in the Material Point Method (MPM),” In International Journal for Numerical Methods in Engineering, Note: DOI: 10.1002/nme.2360, pp. (published online). 2008.
Versions Available: [pdf]



[bibtex]
B. Taccardi, B.B. Punske, E. Macchi, R.S. MacLeod, P.R. Ershler. “Epicardial and Intramural Excitation During Ventricular Pacing: Effect of Myocardial Structure,” In Am J Physiol Heart Circ Physiol, Vol. 294, Note: doi:10.1152/ajpheart.01400.2007, pp. 1753--1766. 2008.
Versions Available: [pdf]



[bibtex]
S.X. Vasquez, M.S. Hansen, A.N. Bahadur, M.F. Hockin, G.L. Kindlmann, L. Nevell, I.Q. Wu, D.J. Grunwald, D.M. Weinstein, G.M. Jones, C.R. Johnson, J.L. Vandeberg, M.R. Capecchi, C. Keller. “Optimization of Volumetric Computed Tomography for Skeletal Analysis of Model Genetic Organisms,” In The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology, Vol. 291, pp. 475--487. 2008.
Versions Available: [pdf]



[bibtex]
Note: VisTrails: A scientific workflow management system. Scientific Computing and Imaging Institute (SCI), Download from: http://www.vistrails.org, 2008.
Versions Available: [org]



[bibtex]
I. Wald, T. Ize, S.G. Parker. “Fast, Parallel, and Asynchronous Construction of BVHs for Ray Tracing Animated Scenes,” In Computers and Graphics, pp. (to appear). 2008.



[bibtex]
H. Wang, C.E. Scheidegger, C. Silva. “Optimal Bandwidth Selection for MLS Surfaces,” In IEEE International Conference on Shape Modeling and Applications (SMI) 2008, pp. (to appear). 2008.



[bibtex]
S. Yau, K. Damevski, D. Zorin, V. Karamcheti, S. Parker. “Result Reuse in Design Space Exploration: A Study in System Support for Interactive Parallel Computing,” In Proceedings of the 22nd International Parallel and Distributed Processing Symposium (IPDPS 2008), Miami, Florida, pp. (accepted). 2008.