%%: Begin bibliography entries

@InProceedings{SCI:Ade94a,
  author =    "S. Adelson and C.D. Hansen",
  title =     "Fast Stereoscopic Images with Ray-Traced Volume
              Rendering",
  booktitle = "Symposium on Volume Visualization",
  pages =     "3--9",
  year =      "1994",
  month =     "October",
  location =  "Washington, DC.",
  keywords =  "volume rendering",
}

@InProceedings{SCI:Adl2006a,
  author =    "G. Adluru and E.V.R. DiBella and R.T. Whitaker",
  title =     "Automatic Segmentation of Cardiac Short Axis
              Slices in Perfusion MRI",
  booktitle = c-ISBI2006,
  pages =     "133--136",
  year =      "2006",
  keywords =  "ip image processing signal processing,
              segmentation, cardiac heart, ncrr, ip gp image
              processing goemetry processing",
  url =       "http://www.sci.utah.edu/publications/adluru06/Adluru_ISBI_06.pdf",
}

@InProceedings{SCI:Adl2006b,
  author =    "G. Adluru and E.V.R. DiBella",
  title =     "Segmentation Based Registration of Myocardium in
              Cardiac Perfusion Images",
  booktitle = c-ISMRM2006,
  volume =    "14",
  pages =     "1223",
  year =      "2006",
  keywords =  "ip image processing signal processing,
              segmentation, cardiac heart, ncrr, ip gp image
              processing goemetry processing",
  url =       "http://www.sci.utah.edu/publications/adluru06/Adluru_ISMRM_06.pdf",
}

@InProceedings{SCI:Adl2006d,
  author =    "G. Adluru and E.V.R. DiBella and M.C. Schabel",
  title =     "Model-Based Registration for Dynamic Cardiac
              Perfusion MRI",
  booktitle = "Journal of Magnetic Resonance Imaging",
  number =    "24",
  pages =     "1062--1070",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/adluru06/Adluru_JMRI_06.pdf",
}

@Article{SCI:Adl2007a,
  author =    "G. Adluru and S.P. Awate and T. Tasdizen and R.T.
              Whitaker and E.V.R. DiBella",
  title =     "Temporally Constrained Reconstruction of Dynamic
              Cardiac Perfusion MRI",
  journal =   "Magnetic Resonance in Medicine",
  volume =    "57",
  pages =     "1027--1036",
  year =      "2007",
  keywords =  "ncrr",
  url =       "http://www.sci.utah.edu/publications/adluru07/Adluru_MRM_07.pdf",
}

@InProceedings{SCI:Adl2007b,
  author =    "G. Adluru and R.T. Whitaker and E.V.R. DiBella",
  title =     "Spatio-Temporal Constrained Reconstruction of
              Sparse Dynamic Contrast Enhanced Radial MRI Data",

  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging",
  pages =     "109--112",
  year =      "2007",
  keywords =  "ncrr",
  url =       "http://www.sci.utah.edu/publications/adluru07/Adluru_ISBI_07.pdf",
}

@InProceedings{SCI:Adl2007c,
  author =    "G. Adluru and E. Hsu and E.V.R. DiBella",
  title =     "Constrained Reconstruction of Sparse Cardiac MR
              DTI Data",
  booktitle = "Proceedings of FIMH 2007",
  number =    "4466",
  pages =     "91--99",
  year =      "2007",
  series =    "LNCS",
  keywords =  "tensor field methods, diffusion tensor imaging,
              cardiac heart",
  url =       "http://www.sci.utah.edu/publications/adluru07/Adluru_FIMH_07.pdf",
}

@InProceedings{SCI:Adl2008a,
  author =    "G. Adluru and E.V.R. DiBella and C.J. McGann",
  title =     "Data Acquisition and Reconstruction of
              Undersampled Radial MR Myocardial Perfusion",
  booktitle = "Proceedings of the 11th Annual Scientific Sessions
              of the Society for Cardiovascular Magnetic
              Resonance (SCMR) 2008",
  pages =     "215",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/adluru08/Adluru_SCMR_08.pdf",
}

@InProceedings{SCI:Adl2008b,
  author =    "G. Adluru and E.V.R. DiBella",
  title =     "A Comparison of L1 and L2 Norms as Temporal
              Constraints for Reconstruction of Undersampled
              Dynamic Contrast Enhanced Cardiac Scans with
              Respiratory Motion",
  booktitle = "Proceedings of the 16th Scientific Meeting &
              Exhibition of the International Society for
              Magnetic Resonance in Medicine (ISMRM) 2008",
  pages =     "340",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/adluru08/Adluru_ISMRM_08_a.pdf",
}

@InProceedings{SCI:Adl2008c,
  author =    "G. Adluru and E.V.R. DiBella",
  title =     "Data Reordering for Improved Constrained
              Reconstruction from Undersampled k-space Data",
  booktitle = "Proceedings of the 16th Scientific Meeting &
              Exhibition of the International Society for
              Magnetic Resonance in Medicine (ISMRM) 2008",
  pages =     "3153",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/adluru08/Adluru_ISMRM_08_b.pdf",
}

@Article{SCI:Adl2010a,
  author =    "G. Adluru and T. Tasdizen and M.C. Schabel and
              E.V.R. DiBella",
  title =     "Reconstruction of 3D Dynamic Contrast-Enhanced
              Magnetic Resonance Imaging Using Nonlocal Means",
  journal =   "Journal of Magnetic Resonance Imaging",
  volume =    "32",
  pages =     "1217--1227",
  year =      "2010",
  doi =       "10.1002/jmri.22358",
  url =       "http://www.sci.utah.edu/publications/adluru10/Adluru_JMRI_10.pdf",
}

@InProceedings{SCI:Adl2010b,
  author =    "G. Adluru and T. Tasdizen and R. Whitaker and E.
              DiBella",
  title =     "Improving Undersampled MRI Reconstruction Using
              Non-Local Means",
  booktitle = "Proceedings of the 2010 International Conference
              on Pattern Recognition",
  pages =     "4000--4003",
  year =      "2010",
  doi =       "10.1109/ICPR.2010.973",
  url =       "http://www.sci.utah.edu/publications/adluru10/Adluru_ICPR_10.PDF",
}

@Article{SCI:Ahm2001a,
  author =    "I. Ahmad and M. Berzins",
  title =     "MOL Solvers for Hyperbolic PDEs with Source
              Terms",
  journal =   "Mathematics and Computers in Simulation",
  volume =    "56",
  pages =     "1115--1125",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/ahmad01/Ahmad_MOL-solvers.pdf",
}

@Article{SCI:Ahm97a,
  author =    "I. Ahmad and M. Berzins",
  title =     "An Algorithm for {ODE}s from Atmospheric
              Dispersion Problems",
  journal =   "Applied Numerical Mathematics",
  volume =    "25",
  pages =     "137--149",
  year =      "1997",
  url =       "http://www.sci.utah.edu/publications/ahmad97/amsterp.pdf",
}

@InProceedings{SCI:Ahr95a,
  author =    "J. Ahrens and C.D. Hansen",
  title =     "Cost-Effective Data-Parallel Load Balancing",
  booktitle = "International Conference on Parallel Processing",
  pages =     "14--18",
  year =      "1995",
  month =     "August",
  location =  "Oconomowoc, Wi.",
}

@Article{SCI:Ako2011a,
  author =    "N. Akoum and M. Daccarett and C. McGann and N.
              Segerson and G. Vergara and S. Kuppahally and T.
              Badger and N. Burgon and T. Haslam and E.
              Kholmovski and R.S. MacLeod and N.F. Marrouche",
  title =     "Atrial fibrosis helps select the appropriate
              patient and strategy in catheter ablation of atrial
              fibrillation: a DE-MRI guided approach",
  journal =   "Journal of Cardiovascular Electrophysiology",
  volume =    "22",
  number =    "1",
  pages =     "16--22",
  year =      "2011",
  doi =       "10.1111/j.1540-8167.2010.01876.x",
  url =       "http://www.sci.utah.edu/publications/akoum11/Akoum_JCE2011.pdf",
}

@Article{SCI:Ale2003a,
  author =    "M. Alexa and J. Behr and D. Cohen-Or and S.
              Fleishman and C.T. Silva and D. Levin",
  title =     "Computing and Rendering Point Set Surfaces",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "9",
  number =    "1",
  pages =     "3--15",
  year =      "2003",
  issn =      "1077-2626",
  url =       "http://www.sci.utah.edu/publications/alexa03/tvcg2003acr.pdf",
}

@InProceedings{SCI:Ale2005a,
  author =    "Y. Alexeev and B.A. Allan and R.C. Armstrong and
              D.E. Bernholdt and T.L. Dahlgren and D. Gannon and
              C.L. Janssen and J.P. Kenny and M. Krishnan and
              J.A. Kohl and G. Kumfert and L.C. McInnes and J.
              Nieplocha and S.G. Parker and C. Rasmussen and T.L.
              Windus",
  title =     "Component-Based Software for High-Performance
              Scientific Computing",
  booktitle = "Journal of Physics: Conference Series",
  number =    "16",
  pages =     "536--540",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/alexeev05/jpconf5_16_073.pdf",
}

@TechReport{SCI:Alt1990a,
  author =    "O. Alter and O. Zachar",
  title =     "Achilles and the Turtle in the Maze of the Weak
              Measurement",
  number =    "TAUP 90-1832",
  year =      "1990",
  institution = "Tel Aviv University",
  type =      "Tel Aviv University Report",
  url =       "http://www.sci.utah.edu/publications/alter90/Alter_Achilles1990.pdf",
}

@Article{SCI:Alt1995a,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Inhibition of the Measurement of the Wave Function
              of a Single Quantum System in Repeated Weak Quantum
              Nondemolition Measurements",
  journal =   "Physical Review Letters",
  volume =    "74",
  number =    "21",
  pages =     "4106--4109",
  year =      "1995",
  publisher = "American Physical Society",
  month =     "May",
  doi =       "10.1103/PhysRevLett.74.4106",
  url =       "http://www.sci.utah.edu/publications/alter95/Alter_PhysRevLett.74.4106.pdf",
}

@InCollection{SCI:Alt1995b,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Can We Measure the Wave Function of a Single Wave
              Packet of Light?: Brownian Motion and Continuous
              Wave Packet Collapse in Repeated Weak Quantum
              Non-Demolition Measurements",
  booktitle = "Fundamental Problems in Quantum Theory",
  volume =    "755",
  pages =     "103–-109",
  year =      "1995",
  editor =    "D.M. Greenberger and A. Zeilinger",
  publisher = "New York Academy of Sciences, New York, NY",
  doi =       "10.1111/j.1749-6632.1995.tb38960.x",
  url =       "http://www.sci.utah.edu/publications/alter95/Alter_FPQT1995.pdf",
}

@Article{SCI:Alt1996a,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Protective Measurement of the Wave Function of a
              Single Squeezed Harmonic Oscillator State",
  journal =   "Physical Review A",
  volume =    "53",
  number =    "5",
  pages =     "R2911–-R2914",
  year =      "1996",
  month =     "May",
  doi =       "10.1103/PhysRevA.53.R2911",
  url =       "http://www.sci.utah.edu/publications/alter96/Alter_PhysRevA.53.R2911.pdf",
}

@InCollection{SCI:Alt1996b,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Inhibition of the Measurement of the Wavefunction
              of a Single Quantum System and the Projection
              Postulate",
  booktitle = "Quantum Physics, Chaos Theory and Cosmology",
  pages =     "151-–172",
  year =      "1996",
  editor =    "M. Namiki, I. Ohba, K. Maeda and Y. Aizawa",
  doi =       "10.1103/PhysRevLett.74.4106",
  url =       "http://www.sci.utah.edu/publications/alter96/Alter_QPCTC1996.pdf",
}

@InCollection{SCI:Alt1996c,
  author =    "O. Alter and Y. Yamamoto",
  title =     "The Quantum Zeno Effect of a Single System is
              Equivalent to the Indetermination of the Quantum
              State of a Single System",
  booktitle = "Quantum Interferometry",
  pages =     "539--544",
  year =      "1996",
  editor =    "F. De Martini, G. Denardo and Y. Shih",
  doi =       "10.1103/PhysRevA.55.R2499",
  url =       "http://www.sci.utah.edu/publications/alter96/Alter_QuantumZeno1996.pdf",
}

@InCollection{SCI:Alt1996d,
  author =    "O. Alter and Y. Yamamoto",
  title =     "The Unknown Wavefunction of a Single System Cannot
              Be Inferred Using Repeated Quantum Measurements",
  booktitle = "Quantum Coherence and Decoherence",
  pages =     "31--34",
  year =      "1996",
  editor =    "K. Fujikawa and Y. A. Ono",
  publisher = "Elsevier Science, Amsterdam, Netherlands",
  url =       "http://www.sci.utah.edu/publications/alter96/Alter_QuantumCohere1996.pdf",
}

@Article{SCI:Alt1997a,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Reply to the Comment on 'Protective Measurement of
              the Wave Function of a Single Squeezed Harmonic
              Oscillator State'",
  journal =   "Physical Review A",
  volume =    "56",
  number =    "1",
  pages =     "1057-–1059",
  year =      "1997",
  month =     "July",
  doi =       "10.1103/PhysRevA.56.1057",
  url =       "http://www.sci.utah.edu/publications/alter97/Alter_PhysRevA.56.1057.pdf",
}

@Article{SCI:Alt1997b,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Quantum Zeno Effect and the Impossibility of
              Determining the Quantum State of a Single System",

  journal =   "Physical Review A",
  volume =    "55",
  number =    "4",
  pages =     "R2499–-R2502",
  year =      "1997",
  month =     "April",
  doi =       "10.1103/PhysRevA.55.R2499",
  url =       "http://www.sci.utah.edu/publications/alter97/Alter_PhysRevA.55.R2499.pdf",
}

@Article{SCI:Alt1998a,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Impossibility of Determining the Unknown
              Wavefunction of a Single Quantum System: Quantum
              Non-Demolition Measurements, Measurements without
              Entanglement and Adiabatic Measurements",
  journal =   "Fortschritte der Physik",
  volume =    "46",
  number =    "6-8",
  pages =     "817-–827",
  year =      "1998",
  month =     "November",
  url =       "http://www.sci.utah.edu/publications/alter98/Alter_Fortchritte1998.pdf",
}

@Article{SCI:Alt1999a,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Fundamental Quantum Limit to External Force
              Detection via Monitoring a Single Harmonic
              Oscillator or Free Mass",
  journal =   "Physics Letters A",
  volume =    "236",
  number =    "4-6",
  pages =     "226--231",
  year =      "1999",
  doi =       "10.1016/S0375-9601(99)00743-4",
  url =       "http://www.sci.utah.edu/publications/alter99/Alter_PhysLettersA1999.pdf",
}

@InProceedings{SCI:Alt2000a,
  author =    "O. Alter and P.O. Brown and D. Botstein",
  title =     "Singular Value Decomposition for Genome-Wide
              Expression Data Processing and Modeling",
  title_url = "http://www.alterlab.org/SVD/PNAS_2000/",
  booktitle = "Proceedings of the National Academy of Sciences",
  volume =    "97",
  number =    "18",
  pages =     "10101--10106",
  year =      "2000",
  month =     "August",
  doi =       "10.1073/pnas.97.18.10101",
  url =       "http://www.sci.utah.edu/publications/alter00/Alter_PNAS2000.pdf",
  url =       "http://www.sci.utah.edu/publications/alter00/Alter_PNAS2000-appendix.pdf",
}

@Book{SCI:Alt2001a,
  author =    "O. Alter and Y. Yamamoto",
  title =     "Quantum Measurement of a Single System",
  pages =     "136",
  year =      "2001",
  publisher = "Wiley, New York, NY",
  isbn =      "9780471283089",
  url =       "http://www.sci.utah.edu/publications/alter01/Alter_Dissertation2001.pdf",
  url =       "http://www.sci.utah.edu/publications/alter01/Alter_QuantumMeasurement2001.zip",
}

@Article{SCI:Alt2001b,
  author =    "O. Alter and P.O. Brown and D. Botstein",
  title =     "Processing and Modeling Genome-Wide Expression
              Data Using Singular Value Decomposition",
  title_url = "http://www.alterlab.org/SVD/SPIE_2001/",
  journal =   "Microarrays: Optical Technologies and
              Informatics",
  volume =    "4266",
  pages =     "171--186",
  year =      "2001",
  editor =    "M. L. Bittner, Y. Chen, A. N. Dorsel and E. R.
              Dougherty (International Society for Optical
              Engineering, Bellingham)",
  url =       "http://www.sci.utah.edu/publications/alter01/Alter_SPIE2001.pdf",
  url =       "http://www.sci.utah.edu/publications/alter01/Alter_SPIE2001-appendix.pdf",
}

@InProceedings{SCI:Alt2003a,
  author =    "O. Alter and P.O. Brown and D. Botstein",
  title =     "Generalized Singular Value Decomposition for
              Comparative Analysis of Genome-Scale Expression
              Datasets of Two Different Organisms",
  booktitle = "Proceedings of the National Academy of Sciences",
  volume =    "100",
  number =    "6",
  pages =     "3351--3356",
  year =      "2003",
  month =     "March",
  doi =       "10.1073/pnas.0530258100",
  url =       "http://www.sci.utah.edu/publications/alter03/Alter_PNAS2003.pdf",
}

@InProceedings{SCI:Alt2004a,
  author =    "O. Alter and G.H. Golub",
  title =     "Integrative Analysis of Genome-Scale Data by Using
              Pseudoinverse Projection Predicts Novel Correlation
              Between DNA Replication and RNA Transcription",
  title_url = "http://www.alterlab.org/pseudoinverse/",
  booktitle = "Proceedings of the National Academy of Sciences",
  volume =    "101",
  number =    "47",
  pages =     "16577–-16582",
  year =      "2004",
  month =     "November",
  doi =       "10.1073/pnas.0406767101",
  url =       "http://www.sci.utah.edu/publications/alter04/Alter_PNAS2004.pdf",
}

@InProceedings{SCI:Alt2004b,
  author =    "O. Alter and G.H. Golub and P.O. Brown and D.
              Botstein",
  title =     "Novel Genome-Scale Correlation Between DNA
              Replication and RNA Transcription During the Cell
              Cycle in Yeast is Predicted by Data-Driven
              Models",
  booktitle = "Proceedings of the Miami Nature Biotechnology
              Winter Symposium on the Cell Cycle, Chromosomes and
              Cancer",
  volume =    "15",
  year =      "2004",
  editor =    "M.P. Deutscher, S. Black, P.E. Boehmer, G. D'Urso,
              T. Fletcher, F. Huijing, A. Marshall, B. Pulverer,
              B. Renault, J.D. Rosenblatt, J.M. Slingerland and
              W.J. Whelan (University of Miami School of
              Medicine, Miami, 2004)",
  url =       "http://www.sci.utah.edu/publications/alter04/Alter_MNBWS2004.pdf",
}

@InProceedings{SCI:Alt2005a,
  author =    "O. Alter and G.H. Golub",
  title =     "Reconstructing the Pathways of a Cellular System
              from Genome-Scale Signals by Using Matrix and
              Tensor Computations",
  title_url = "http://www.alterlab.org/network_decomposition/",
  booktitle = "Proceedings of the National Academy of Sciences",
  volume =    "102",
  number =    "49",
  pages =     "17559-–17564",
  year =      "2005",
  month =     "December",
  doi =       "10.1073/pnas.0509033102",
  url =       "http://www.sci.utah.edu/publications/alter05/Alter_PNAS2005.pdf",
  url =       "http://www.sci.utah.edu/publications/alter05/Alter_PNAS2005-appendix.pdf",
}

@Article{SCI:Alt2006a,
  author =    "I. Altintas and O. Barney and Z. Cheng and T.
              Critchlow and B. Ludaescher and S.G. Parker and A.
              Shoshani and M. Vouk",
  title =     "Accelerating the Scientific Exploration Process
              with Scientific Workflows",
  journal =   "J. Phys. : Conf. Ser.",
  volume =    "46",
  pages =     "468--478",
  year =      "2006",
  keywords =  "SciDAC Scientific Data Management (SDM) Center, ,
              scidac scientific data management (sdm) center",
  url =       "http://www.sci.utah.edu/publications/altintas06/jpconf6_46_065.pdf",
}

@InProceedings{SCI:Alt2006b,
  author =    "O. Alter",
  title =     "Discovery of Principles of Nature from
              Mathematical Modeling of DNA Microarray Data",
  booktitle = "Proceedings of the National Academy of Sciences",
  volume =    "103",
  number =    "44",
  pages =     "16063--16064",
  year =      "2006",
  month =     "October",
  doi =       "10.1073/pnas.0607650103",
  url =       "http://www.sci.utah.edu/publications/alter06/PNAS-2006-Alter-16063-4.pdf",
}

@InProceedings{SCI:Alt2006c,
  author =    "O. Alter and G. H. Golub",
  title =     "Singular Value Decomposition of Genome-Scale mRNA
              Lengths Distribution Reveals Asymmetry in RNA Gel
              Electrophoresis Band Broadening",
  title_url = "http://www.alterlab.org/harmonic_oscillator/",
  booktitle = "Proceedings of the National Academy of Sciences",
  volume =    "103",
  number =    "32",
  pages =     "11828--11833",
  year =      "2006",
  month =     "August",
  doi =       "10.1073/pnas.0604756103",
  url =       "http://www.sci.utah.edu/publications/alter06/Alter_PNAS2006.pdf",
}

@Article{SCI:Alt2007a,
  author =    "O. Alter",
  title =     "Genomic Signal Processing: From Matrix Algebra to
              Genetic Networks",
  journal =   "Microarray Data Analysis: Methods in Molecular
              Biology",
  volume =    "377",
  pages =     "17--59",
  year =      "2007",
  editor =    "M.J. Korenberg",
  publisher = "Humana Press, Totowa",
  doi =       "10.1007/978-1-59745-390-5_2",
  url =       "http://www.sci.utah.edu/publications/alter07/Alter_Humana2007.pdf",
}

@InProceedings{SCI:Ame2004a,
  author =    "S. Amer-Yahia and F. Du and J. Freire",
  title =     "A Comprehensive Solution to the XML-to-Relational
              Mapping Problem",
  booktitle = "Proceedings of the 6th Annual ACM International
              Workshop on Web Information and Data Management",
  pages =     "31--38",
  year =      "2004",
  location =  "Washington DC, USA",
  isbn =      "1-58113-978-0",
  url =       "http://www.sci.utah.edu/publications/amer-yahia04/Amer-yahia_WIDM2004.pdf",
}

@Article{SCI:And1992a,
  author =    "D.R. Anderson and J.A. Weiss and S. Takai and K.J.
              Ohland and S.L-Y. Woo",
  title =     "Healing of the Medial Collateral Ligament
              Following a Triad Injury: A Biomechanical and
              Histological Study of the Knee in Rabbits",
  journal =   "Journal of Orthopaedic Research",
  volume =    "10",
  pages =     "485--495",
  year =      "1992",
}

@InProceedings{SCI:And2004a,
  author =    "A.E. Anderson and C.L. Peters and B.D. Tuttle and
              J.A. Weiss",
  title =     "Development and Validation of a Subject-Specific
              Finite Element Model of the Pelvis: Assessment of
              Model Sensitivity",
  booktitle = c-CMBBE2004,
  pages =     "(6 pages)",
  year =      "2004",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational mechanics, computational
              biomechanics, ip image processing signal
              processing, segmentation, surface processing",
  url =       "http://www.sci.utah.edu/publications/anderson04/25B.pdf",
}

@InProceedings{SCI:And2004b,
  author =    "A.E. Anderson and C.L. Peters and B.D. Tuttle and
              J.A. Weiss",
  title =     "A Subject-Specific Finite Element Model of the
              Pelvis Accurately Predicts Cortical Strains Under
              Acetabular Loading",
  booktitle = c-ORS2004,
  volume =    "29",
  pages =     "1334",
  year =      "2004",
  month =     "March",
  location =  "San Francisco, {CA}",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational mechanics, computational
              biomechanics, segmentation, surface processing",
}

@Article{SCI:And2005a,
  author =    "A.E. Anderson and C.L. Peters and B.D. Tuttle and
              J.A. Weiss",
  title =     "A Subject-Specific Finite Element Model of the
              Pelvis: Development, Validation and Sensitivity
              Studies",
  journal =   j-JBE,
  volume =    "127",
  number =    "3",
  pages =     "364--373",
  year =      "2005",
  keywords =  "finite elements, computational mechanics,
              computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/anderson05/Anderson_JBME_2005.pdf",
}

@TechReport{SCI:And2006a,
  author =    "E.W. Anderson and S.P. Callahan and G.T.Y. Chen
              and J. Freire and E. Santos and C.E. Scheidegger
              and C.T. Silva and H.T. Vo",
  title =     "Visualization in Radiation Oncology: Towards
              Replacing the Laboratory Notebook",
  number =    "UUSCI-2006-017",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scalar field methods",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-017.pdf",
}

@Article{SCI:And2006b,
  author =    "A.E. Anderson and B.J. Ellis and J.A. Weiss",
  title =     "Verification, Validation and Sensitivity Studies
              in Computational Biomechanics",
  journal =   "Computer Methods in Biomechanics and Biomedical
              Engineering",
  pages =     "(in press)",
  year =      "2006",
  keywords =  "mrl, computational mechanics, computational
              biomechanics",
  url =       "http://www.sci.utah.edu/publications/anderson06/anderson_cmbbe_2007.pdf",
}

@InProceedings{SCI:And2007b,
  author =    "E.W. Anderson and S.P. Callahan and C.E.
              Scheidegger and J.M. Schriener and C.T. Silva",
  title =     "Hardware-Assisted Point-Based Volume Rendering of
              Tetrahedral Meshes",
  booktitle = "Proceedings of SIBGRAPI 2007",
  pages =     "163--170",
  year =      "2007",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/anderson07/pbvr.pdf",
}

@InProceedings{SCI:And2007c,
  author =    "E.W. Anderson and G.A. Preston and C.T. Silva",
  title =     "Towards Development of a Circuit Based Treatment
              for Impaired Memory: A Multidisciplinary
              Approach",
  booktitle = "Proceedings of IEEE EMBS Neural Engineering
              2007",
  pages =     "163--172",
  year =      "2007",
  keywords =  "neuro brain",
  url =       "http://www.sci.utah.edu/publications/anderson07/embs2007_neuro.pdf",
}

@Article{SCI:And2007d,
  author =    "A.E. Anderson and B.J. Ellis and J.A. Weiss",
  title =     "Verification, Validation and Sensitivity Studies
              in Computational Biomechanics",
  journal =   "Computer Methods in Biomechanics and Biomedical
              Engineering",
  volume =    "10",
  number =    "3",
  pages =     "171--184",
  year =      "2007",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/anderson07/anderson_cmbbe_2007.pdf",
}

@InProceedings{SCI:And2007e,
  author =    "E.W. Anderson and S.P. Callahan and D.A. Koop and
              E. Santos and C.E. Scheidegger and H.T. Vo and J.
              Freire and C.T. Silva",
  title =     "VisTrails: Using Provenance to Streamline Data
              Exploration",
  booktitle = "Poster Proceedings of the International Workshop
              on Data Integration in the Life Sciences (DILS)
              2007",
  year =      "2007",
  note =      "Poster presentation",
  keywords =  "vistrails",
}

@Article{SCI:And2008a,
  author =    "A.E. Anderson and B.J. Ellis and C.L. Peters and
              J.A. Weiss",
  title =     "Cartilage Thickness: Factors Influencing
              Multidetector CT Measurements in a Phantom Study",

  journal =   "Radiology",
  volume =    "246",
  number =    "1",
  pages =     "133-141",
  year =      "2008",
  pmid =      "18982614",
  keywords =  "bioengineering, MRL",
  url =       "http://www.sci.utah.edu/publications/anderson08/Anderson_Radiology_2008.pdf",
}

@Article{SCI:And2008b,
  author =    "A.E. Anderson and B.J. Ellis and S.A. Maas and
              C.L. Peters and J.A. Weiss",
  title =     "Validation of Finite Element Predictions of
              Cartilage Contact Pressure in the Human Hip
              Joint",
  journal =   "ASME Journal of Biomechanical Engineering",
  volume =    "130",
  number =    "3",
  pages =     "051008-1--10",
  year =      "2008",
  month =     "May",
  keywords =  "bioengineering, MRL",
  url =       "http://www.sci.utah.edu/publications/anderson08/anderson_jbme_2008.pdf",
}

@Article{SCI:And2008c,
  author =    "E.W. Anderson and J. Ahrens and K. Heitmann and S.
              Habib and C.T. Silva",
  title =     "Provenance in Comparative Analysis: A Study in
              Cosmology",
  journal =   "Computing in Science and Engineering",
  volume =    "10",
  number =    "3",
  pages =     "30--37",
  year =      "2008",
  keywords =  "astronomy, cosmology, astrophysics, big bang,
              vistrails, workflows, provenance",
  url =       "http://www.sci.utah.edu/publications/anderson08/cise2008c.pdf",
}

@Article{SCI:And2008d,
  author =    "A.E. Anderson and B.J. Ellis and C.L. Peters and
              J.A. Weiss",
  title =     "Factors Influencing Cartilage Thickness
              Measurements with Multi-Detector CT: A Phantom
              Study",
  journal =   "Radiology",
  volume =    "246",
  number =    "1",
  pages =     "144-141",
  year =      "2008",
  keywords =  "mrl",
}

@Article{SCI:And2009a,
  author =    "J.R. Anderson and B.W. Jones and J.-H. Yang and
              M.V. Shaw and C.B. Watt and P. Koshevoy and J.
              Spaltenstein and E. Jurrus and Kannan U.V. and R.T.
              Whitaker and D. Mastronarde and T. Tasdizen and
              R.E. Marc",
  title =     "A Computational Framework for Ultrastructural
              Mapping of Neural Circuitry",
  title_url =
              "http://www.plosbiology.org/article/info:doi/10.1371/journal.pbio.1000074",

  journal =   "PLoS Biology",
  volume =    "7",
  number =    "3",
  pages =     "e74",
  year =      "2009",
  pmid =      "19855814",
  keywords =  "ucnia, crcns, ir-tweak, ir-tools, ncr toolset,
              neural circuit reconstruction, electron microscopy
              registration",
  url =       "http://www.sci.utah.edu/publications/anderson09/Anderson_PLoSBio2009.pdf",
}

@InProceedings{SCI:And2009b,
  author =    "J. Anderson and B. Jones and J. Yang and M. Shaw
              and C. Watt and P. Koshevoy and J. Spaltenstein and
              E. Jurrus and Kannan U.V. and R.T. Whitaker and D.
              Mastronarde and T. Tasdizen and R. Marc",
  title =     "Ultra Structural Mapping of Neural Circuitry: A
              Computational Framework",
  booktitle = "IEEE International Symposium on Biomedical
              Engineering (ISBI 2009)",
  pages =     "(accepted)",
  year =      "2009",
  keywords =  "crcns, neural circuitry",
  url =       "http://www.sci.utah.edu/publications/anderson09/Anderson_ISBI2009.pdf",
}

@Article{SCI:And2010a,
  author =    "A.E. Anderson and B.J. Ellis and S.A. Maas and
              J.A. Weiss",
  title =     "Effects of idealized joint geometry on finite
              element predictions of cartilage contact stresses
              in the hip",
  journal =   "Journal of Biomechanics",
  number =    "43",
  pages =     "1351--1357",
  year =      "2010",
  keywords =  "mrl",
  url =       "http://www.sci.utah.edu/publications/anderson10/anderson_jbiomech_2010.pdf",
}

@Article{SCI:And2010b,
  author =    "E.W. Anderson and G.A. Preston and C.T. Silva",
  title =     "Using Python for Signal Processing and
              Visualization",
  journal =   "IEEE Computing in Science and Engineering",
  volume =    "12",
  number =    "4",
  pages =     "90--95",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/anderson10/Anderson_python_processing2010.pdf",
}

@Article{SCI:And2010c,
  author =    "J.R. Anderson and B.C. Grimm and S. Mohammed and
              B.W. Jones and T. Tasdizen and J. Spaltenstein and
              P. Koshevoy and R.T. Whitaker and R.E. Marc",
  title =     "The Viking Viewer: Scalable Multiuser Annotation
              and Summarization of Large Volume Datasets",
  journal =   "Journal of Microscopy",
  volume =    "241",
  number =    "1",
  pages =     "13--28",
  year =      "2010",
  doi =       "10.1111/j.1365-2818.2010.03402.x",
  url =       "http://www.sci.utah.edu/publications/anderson10/Anderson_JMicro2010.pdf",
}

@Article{SCI:And2011a,
  author =    "J.R. Anderson and B.W. Jones and C.B. Watt and
              M.V. Shaw and J.-H. Yang and D. DeMill and J.S.
              Lauritzen and Y. Lin and K.D. Rapp and D.
              Mastronarde and P. Koshevoy and B. Grimm and T.
              Tasdizen and R.T. Whitaker and R.E. Marc",
  title =     "Exploring the Retinal Connectome",
  journal =   "Molecular Vision",
  number =    "17",
  pages =     "355--379",
  year =      "2011",
  pmid =      "21311605",
  keywords =  "neuroscience, retina, vision, blindness, visus,
              crcns",
  url =       "http://www.sci.utah.edu/publications/anderson11/Anderson_MolVis2011.pdf",
}

@InProceedings{SCI:And2011b,
  author =    "E.W. Anderson and K.C. Potter and L.E. Matzen and
              J.F. Shepherd and G.A. Preston and C.T. Silva",
  title =     "A User Study of Visualization Effectiveness Using
              EEG and Cognitive Load",
  booktitle = "Eurographics/IEEE Symposium on Visualization
              2011",
  volume =    "30",
  number =    "3",
  year =      "2011",
  editor =    "H. Hauser, H. Pfister, and J.J. van Wijk",
  note =      "Awarded 2nd Best Paper!",
  doi =       "10.1111/j.1467-8659.2011.01928.x",
  url =       "http://www.sci.utah.edu/publications/anderson11/Anderson_eurovis2011.pdf",
}

@InProceedings{SCI:And2011c,
  author =    "N. Andrysco and P. Rosen and V. Popescu and B.
              Benes and K.R. Gurney",
  title =     "Experiences in Disseminating Educational
              Visualizations",
  booktitle = "Lecture Notes in Computer Science (7th
              International Symposium on Visual Computing)",
  volume =    "2",
  pages =     "239--248",
  year =      "2011",
  month =     "September",
  doi =       "10.1007/978-3-642-24031-7_24",
  url =       "http://www.sci.utah.edu/publications/andrysco11/Andrysco.2011.ISVC.pdf",
}

@Article{SCI:And2011d,
  author =    "J.S. Anderson and J.A. Nielsen and A.L. Froehlich
              and M.B. DuBray and T.J. Druzgal and A.N. Cariello
              and J.R. Cooperrider and B.A. Zielinski and C.
              Ravichandran and P.T. Fletcher and A.L. Alexander
              and E.D. Bigler and N. Lange and J.E. Lainhart",
  title =     "Functional connectivity magnetic resonance imaging
              classification of autism",
  journal =   "Brain",
  pages =     "(published online)",
  year =      "2011",
  doi =       "10.1093/brain/awr263",
  pmid =      "22006979",
  url =       "http://www.sci.utah.edu/publications/anderson11/Anderson_Brain2011.pdf",
}

@Article{SCI:Ape2000a,
  author =    "Th. Apel and M. Berzins and P.K. Jimack and G.
              Kunert and A. Plaks and I. Tsukerman and M.
              Walkley",
  title =     "Mesh Shape and Anistropic Elements: Theory and
              Practice",
  journal =   "The Mathematics of Finite Elements and
              Applications X",
  pages =     "367--376",
  year =      "2000",
  editor =    "J.R. Whiteman",
  publisher = "Elsevier",
  keywords =  "finite elements, meshing",
  url =       "http://www.sci.utah.edu/publications/apel00/ABJKPTW99.pdf",
}

@Article{SCI:Arm2006a,
  author =    "R. Armstrong and G. Kumfert and L.C. McInnes and
              S.G. Parker and B. Allan and M. Sottile and T.
              Epperly and T. Dahlgren",
  title =     "The CCA Component Model for High-Performance
              Scientific Computing",
  journal =   "Concurrency and Computation: Practice &
              Experience",
  volume =    "18",
  number =    "2",
  pages =     "215--229",
  year =      "2006",
  publisher = "John Wiley and Sons Ltd.",
  address =   "Chichester, UK",
  issn =      "1532-0626",
  keywords =  "ncrr, Common Component Architecture, CCA",
}

@InProceedings{SCI:Arm99a,
  author =    "R. Armstrong and D. Gannon and A. Geist and K.
              Keahey and S. Kohn and L. McInnes and S.G. Parker
              and B. Smolinksi",
  title =     "Toward a Common Component Architecture for
              High-Performance Scientific Computing",
  booktitle = "Proceedings of the 8th {IEEE} International
              Symposium on High Performance Distributed
              Computation ({HPDC})",
  year =      "1999",
  month =     "August",
  keywords =  "scirun, CCA",
  url =       "http://www.sci.utah.edu/publications/hpdc99/cca.ps.gz",
  url =       "http://www.sci.utah.edu/publications/hpdc99/cca.pdf",
}

@Article{SCI:Ate2006a,
  author =    "G.A. Ateshian and B.J. Ellis and J.A. Weiss",
  title =     "Equivalence Between Instantaneous Biphasic and
              Incompressible Elastic Material Response",
  journal =   "Journal of Biomechanical Engineering",
  pages =     "(in press)",
  year =      "2006",
  month =     "November",
  keywords =  "mrl, computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/ateshian06/ateshian_jbme_2007.pdf",
}

@Article{SCI:Ate2007a,
  author =    "G.A. Ateshian and B.J. Ellis and J.A. Weiss",
  title =     "Equivalence Between Short-Time Biphasic and
              Incompressible Elastic Material Response",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "129",
  number =    "3",
  pages =     "405--412",
  year =      "2007",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/ateshian07/ateshian_jbme_2007.pdf",
}

@Article{SCI:Ate2010a,
  author =    "G.A. Ateshian and S.A. Maas and J.A. Weiss",
  title =     "Finite element algorithm for frictionless contact
              of porous permeable media under finite deformation
              and sliding",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "132",
  number =    "6",
  year =      "2010",
  note =      "Cover article",
  keywords =  "mrl",
  url =       "http://www.sci.utah.edu/publications/ateshian10/ateshian_jbme_2010.pdf",
}

@Article{SCI:Ate2011a,
  author =    "G.A. Ateshian and M.B. Albro and S.A. Maas and
              J.A. Weiss",
  title =     "{F}inite element implementation of mechanochemical
              phenomena in neutral deformable porous media under
              finite deformation",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "133",
  number =    "8",
  year =      "2011",
  doi =       "10.1115/1.4004810",
  url =       "http://www.sci.utah.edu/publications/ateshian11/Ateshian_JBE2011.pdf",
}

@Article{SCI:Att2006a,
  author =    "L. Atty and N. Holzschuch and M. Lapierre and
              J.-M. Hasenfratz and C.D. Hansen and F.X.
              Sillion",
  title =     "Soft Shadow Maps: Efficient Sampling of Light
              Source Visibility",
  journal =   "Computer Graphics Forum",
  volume =    "25",
  number =    "4",
  pages =     "725--741",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/atty06/Soft_Shadow_Maps.pdf",
}

@TechReport{SCI:Awa2005a,
  author =    "S.P. Awate and T. Tasdizen and R.T. Whitaker",
  title =     "Nonparametric Statistics of Image Neighborhoods
              for Unsupervised Texture Segmentation",
  number =    "UUSCI-2005-003",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "segmentation",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-003.pdf",
}

@TechReport{SCI:Awa2005b,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Higher-Order Image Statistics for Unsupervised,
              Information-Theoretic, Adaptive, Image Filtering",

  number =    "UUSCI-2005-004",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-004.pdf",
}

@TechReport{SCI:Awa2005c,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Nonparametric Neighborhood Statistics for MRI
              Denoising",
  number =    "UUSCI-2005-005",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-005.pdf",
}

@InProceedings{SCI:Awa2005e,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Nonparametric Neighborhood Statistics for MRI
              Denoising",
  booktitle = "In Proc. Int. Conf. Information Processing in
              Medical Imaging (IPMI), 2005. Lecture Notes in
              Computer Science",
  volume =    "3565",
  pages =     "677--688",
  year =      "2005",
  month =     "July",
  keywords =  "ip image processing signal processing, ncrr",
  url =       "http://www.sci.utah.edu/publications/awate05/Awate_nonparametric_neighborhood.pdf",
}

@InProceedings{SCI:Awa2005f,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Higher-Order Image Statistics for Unsupervised,
              Information-Theoretic, Adaptive, Image Filtering",

  booktitle = "Proceedings of the IEEE Int. Conf. Computer Vision
              and Pattern Recognition (CVPR)",
  pages =     "44--51",
  year =      "2005",
  keywords =  "ip image processing signal processing, ncrr",
  url =       "http://www.sci.utah.edu/publications/awate05/Awate_UINTA_CVPR.pdf",
}

@Article{SCI:Awa2005g,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Unsupervised, Information-Theoretic, Adaptive
              Image Filtering for Image Restoration",
  journal =   j-PAMI,
  volume =    "28",
  number =    "3",
  pages =     "364--376",
  year =      "2005",
  keywords =  "ip image processing signal processing, ncrr",
  url =       "http://www.sci.utah.edu/publications/awate05/Awate_JPAMI05.pdf",
}

@TechReport{SCI:Awa2006a,
  author =    "S.P. Awate and T. Tasdizen and N. Foster and R.T.
              Whitaker",
  title =     "Adaptive, Nonparametric Markov Modeling for
              Unsupervised, MRI Brain-Tissue Classification",
  number =    "UUSCI-2006-008",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-008.pdf",
}

@InProceedings{SCI:Awa2006b,
  author =    "S.P. Awate and T. Tasdizen and R.T. Whitaker",
  title =     "Unsupervised Texture Segmentation with
              Nonparametric Neighborhood Statistics",
  booktitle = "Proceedings of The European Conference on Computer
              Vision (ECCV) 2006 Springer, Lecture Notes in
              Computer Science",
  pages =     "494--507",
  year =      "2006",
  keywords =  "segmentation, ip image processing signal
              processing, crcns",
  url =       "http://www.sci.utah.edu/publications/awate06/Awate_ECCV_SegmentTextures.pdf",
}

@TechReport{SCI:Awa2006c,
  author =    "S.P. Awate and T. Tasdizen and R.T. Whitaker",
  title =     "Unsupervised Texture Segmentation with
              Nonparametric Neighborhood Statistics",
  number =    "UUSCI-2006-011",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing,
              segmentation",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-011.pdf",
}

@Article{SCI:Awa2006d,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Unsupervised, Information-Theoretic, Adaptive
              Image Filtering for Image Restoration",
  journal =   j-PAMI,
  volume =    "28",
  number =    "3",
  pages =     "364--376",
  year =      "2006",
  month =     "March",
  pmid =      "16526423",
  keywords =  "ip image processing signal processing, ncrr",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_UINTA_PAMI.pdf",
}

@TechReport{SCI:Awa2006e,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Adaptive Markov Models for Information-Theoretic
              Empirical-Bayesian MRI Denoising",
  number =    "UUSCI-2006-030",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-030.pdf",
}

@PhdThesis{SCI:Awa2006f,
  author =    "S.P. Awate",
  title =     "Adaptive, Nonparametric Markov Models and
              Information-Theoretic Methods for Image Restoration
              and Segmentation",
  year =      "2006",
  school =    "School of Computing, University of Utah",
  month =     "December",
  note =      "PhD Thesis",
  keywords =  "ip image processing signal processing,
              segmentation",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_Dissertation.pdf",
}

@InProceedings{SCI:Awa2006g,
  author =    "S.P. Awate and E.V.R. DiBella and T. Tasdizen and
              R.T. Whitaker",
  title =     "Model-Based Image Reconstruction for Dynamic
              Cardiac Perfusion MRI from Sparse Data",
  booktitle = "Proceedings of the 2006 IEEE Int. Conf.
              Engineering and Biology Society (EMBC)",
  pages =     "936--941",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_ModelBasedCardiacPerfusionReconstruct.pdf",
}

@Article{SCI:Awa2006h,
  author =    "S.P. Awate and T. Tasdizen and N.L. Foster and
              R.T. Whitaker",
  title =     "Adaptive, Nonparametric Markov Modeling for
              Unsupervised, MRI Brain-Tissue Classification",
  journal =   "Medical Image Analysis (MEDIA)",
  volume =    "10",
  number =    "5",
  pages =     "726--739",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_MRI_Segmentation.pdf",
}

@Article{SCI:Awa2007a,
  author =    "S. Awate and R.T. Whitaker",
  title =     "Feature-Preserving MRI Denoising: A Nonparametric
              Empirical-Bayes Approach",
  journal =   "IEEE Transactions on Medical Imaging",
  volume =    "26",
  number =    "9",
  pages =     "1242--1255",
  year =      "2007",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/awate07/Awate_MRI_Denoising_TMI.pdf",
}

@Article{SCI:Awa2010a,
  author =    "S.P. Awate and P.A. Yushkevich and Z. Song and
              D.J. Licht and J.C. Gee",
  title =     "Cerebral cortical folding analysis with
              multivariate modeling and testing: Studies on
              gender differences and neonatal development",
  journal =   "NeuroImage",
  volume =    "53",
  number =    "2",
  pages =     "450--459",
  year =      "2010",
  pmid =      "20630489",
  url =       "http://www.sci.utah.edu/publications/awate10/Awate_NeuroImage2010.pdf",
}

@InProceedings{SCI:Aya88a,
  author =    "N. Ayache and C.D. Hansen",
  title =     "Rectification of Images for Binocular and
              Trinocular Stereovision",
  booktitle = "International Conference on Pattern Recognition",
  number =    "RR-0860",
  year =      "1988",
  month =     "November",
  location =  "Rome, Italy",
}

@Conference{SCI:Bab2006a,
  author =    "S. Babaeizadeh and D.H. Brooks",
  title =     "Imaging Error from Mislocation of Surface Sensors:
              Sensitivity, Detection, and Estimate Correction,
              with Application to EIT",
  booktitle = "Proceedings of the IEEE International Conference
              on Acoustics, Speech, and Signal Processing",
  year =      "2006",
  address =   "Toulouse, France",
  month =     "May",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr, bioelectric
              fields",
}

@Article{SCI:Bad2009a,
  author =    "T.J. Badger and R.S. Oakes and M. Daccarett and
              N.S. Burgon and N. Akoum and E.N. Fish and J.J.
              Blauer and S.N. Rao and Y. Adjei-Poku and E.G.
              Kholmovski and S. Vijayakumar and E.V. Di Bella and
              R.S. MacLeod and N.F. Marrouche",
  title =     "Temporal Left Atrial Lesion Formation After
              Ablation of Atrial Fibrillation",
  journal =   "Heart Rhythm",
  volume =    "6",
  number =    "2",
  pages =     "161--168",
  year =      "2009",
  month =     "February",
  url =       "http://www.sci.utah.edu/publications/badger09/TemporalLeftAtrialLession.pdf",
}

@Article{SCI:Bad2009b,
  author =    "T.J. Badger and Y.A. Adjei-Poku and N.S. Burgon
              and S. Kalvaitis and A. Shaaban and D.N. Sommers
              and J.J.E. Blauer and E.N. Fish N. Akoum and T.S.
              Haslem and E.G. Kholmovski and R.S. MacLeod and
              D.G. Adler and N.F. Marrouche",
  title =     "Initial Experience of Assessing Esophageal Tissue
              Injury and Recovery Using Delayed-Enhancement MRI
              After Atrial Fibrillation Ablation",
  journal =   "Circulation: Arrhythmia and Electrophysiology",
  volume =    "2",
  pages =     "620--625",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/badger09/Badger_CAE2009a.pdf",
}

@Article{SCI:Bad2010a,
  author =    "T.J. Badger and M. Daccarett and N.W. Akoum and
              Y.A. Adjei-Poku and N.S. Burgon and T.S. Haslam and
              S. Kalvaitis and S. Kuppahally and G. Vergara and
              L. McMullen and P.A. Anderson and E. Kholmovski and
              R.S. Macleod and N.F. Marrouche",
  title =     "Evaluation of left atrial lesions after initial
              and repeat atrial fibrillation ablation: lessons
              learned from delayed-enhancement MRI in repeat
              ablation procedures",
  journal =   "Circulation. Arrhythmia and Electrophysiology",
  volume =    "3",
  number =    "3",
  pages =     "249--259",
  year =      "2010",
  pmid =      "20335558",
  keywords =  "cibc",
  url =       "http://www.sci.utah.edu/publications/badger10/Badger_CircArrhythmElectrophysiol2010.pdf",
}

@Article{SCI:Bag1993a,
  author =    "C.M. Bagi and M. Mecham and J.A. Weiss and S.C.
              Miller",
  title =     "Comparative Morphometric Changes in Rat Cortical
              Bone Following Ovariectomy and/or Immobilization",

  journal =   "Bone",
  volume =    "14",
  pages =     "877--883",
  year =      "1993",
}

@Article{SCI:Bah2007a,
  author =    "A.N. Bahadur and I.Q. Wu and D.M. Weinstein and
              M.D. Davis and D.A. Lewis and P. Kochunov and C.
              Keller",
  title =     "Multimodality Chamber for Coregistered Anatomical
              and Molecular Imaging of Small Animals",
  journal =   "Lab Animal",
  volume =    "36",
  number =    "8",
  pages =     "29--35",
  year =      "2007",
}

@InProceedings{SCI:Baj1996a,
  author =    "C.L. Bajaj and V. Pascucci and D.R. Schikore",
  title =     "Fast Isocontouring for Improved Interactivity",
  booktitle = "1996 Volume Visualization Symposium",
  pages =     "39--46",
  year =      "1996",
  organization = "IEEE Computer Society",
  month =     "October",
  isbn =      "0-89791-741-3",
}

@InProceedings{SCI:Baj1996b,
  author =    "C.L. Bajaj and V. Pascucci",
  title =     "Splitting a Complex of Convex Polytopes in any
              Dimension",
  booktitle = "Proceedings of the Twelfth Annual Symposium On
              Computational Geometry ({ISG} '96)",
  pages =     "88--97",
  year =      "1996",
  publisher = "ACM Press",
  address =   "New York",
  month =     "May",
  isbn =      "0-89791-832-0",
}

@InProceedings{SCI:Baj1996c,
  author =    "C.L. Bajaj and F. Bernardini and V. Pascucci and
              D.R. Schikore",
  title =     "Interrogative Visualization of the Visible Human
              Datasets",
  booktitle = "Proceedings of the The Visible Human Project
              Conference",
  year =      "1996",
}

@InProceedings{SCI:Baj1997a,
  author =    "C.L. Bajaj and V. Pascucci and D.R. Schikore",
  title =     "The Contour Spectrum",
  booktitle = "Proceedings of the 8th Annual {IEEE} Conference on
              Visualization ({VIS}-97)",
  pages =     "167--175",
  year =      "1997",
  editor =    "Roni Yagel and Hans Hagen",
  organization = "IEEE Computer Society",
  month =     "November",
}

@InProceedings{SCI:Baj1997b,
  author =    "C. Bajaj and H.Y. Lee and R. Merkert and V.
              Pascucci",
  title =     "{NURBS} based {B}-rep Models for Macromolecules
              and their Properties",
  booktitle = "Proceedings of the 4th Symposium on Solid Modeling
              and Applications",
  pages =     "217--228",
  year =      "1997",
  editor =    "Christoph Hoffmann and Wim Bronsvort",
  publisher = "ACM Press",
  address =   "New York",
  month =     "May",
  isbn =      "0-89791-946-7",
}

@InProceedings{SCI:Baj1997d,
  author =    "C.L. Bajaj and V. Pascucci and D.R. Schikore",
  title =     "Fast Isocontouring for Structured and Unstructured
              Meshes in Any Dimension",
  booktitle = "Late Breaking Hot Topics Proceedings of the 8th
              Annual {IEEE} Conference on Visualization
              ({VIS}-97)",
  pages =     "25--28",
  year =      "1997",
  editor =    "Amitabj Varshney and David S. Ebert",
  organization = "IEEE Computer Society",
  month =     "November",
}

@InProceedings{SCI:Baj1998a,
  author =    "C.L. Bajaj and V. Pascucci and R.J. Holt and A.N.
              Netravali",
  title =     "Dynamic Maintenance and Visualization of Molecular
              Surfaces",
  booktitle = "Proceedings of the 10th Canadian Conference on
              Computational Geometry ({CCCG})",
  pages =     "68--69",
  year =      "1998",
  editor =    "Mike Soss",
  publisher = "School of Computer Science, McGill University",
  month =     "August",
  location =  "Montreal, Quebec, Canada",
}

@InProceedings{SCI:Baj1998b,
  author =    "C.L. Bajaj and V. Pascucci and G. Rabbiolo and
              D.R. Schikore",
  title =     "Hypervolume Visualization: A Challenge in
              Simplicity",
  booktitle = "Proceedings of the 1998 IEEE Symposium on Volume
              Visualization",
  pages =     "95--102",
  year =      "1998",
}

@InProceedings{SCI:Baj1998c,
  author =    "C.L. Bajaj and V. Pascucci and D.R. Schikore",
  title =     "Visualization of Scalar Topology for Structural
              Enhancement",
  booktitle = "Proceedings of the 9th Annual {IEEE} Conference on
              Visualization ({VIS}-98)",
  pages =     "51--58",
  year =      "1998",
  organization = "IEEE Computer Society",
  address =   "New York",
  month =     "October",
  isbn =      "1-58113-106-2",
}

@Article{SCI:Baj1999a,
  author =    "C.L. Bajaj and C. Baldazzi and S. Cutchin and A.
              Paoluzzi and V. Pascucci and M. Vicentino",
  title =     "A Programming Approach for Complex Animations",
  journal =   "Computer Aided Design",
  volume =    "31",
  number =    "11",
  pages =     "695--710",
  year =      "1999",
}

@InProceedings{SCI:Baj1999b,
  author =    "C.L. Bajaj and V. Pascucci and G. Zhuang",
  title =     "Single Resolution Compression of Arbitrary
              Triangular Meshes with Properties",
  booktitle = "Computational Geometry: Theory and Applications",
  volume =    "14",
  number =    "1--3",
  pages =     "167--186",
  year =      "1999",
}

@InBook{SCI:Baj1999c,
  author =    "C.L. Bajaj and V. Pascucci and D.R. Schikore",
  title =     "Data Visualization Techniques",
  volume =    "6",
  pages =     "31--47",
  year =      "1999",
  editor =    "C.L. Bajaj",
  chapter =   "3: Accelerated IsoContouring of Scalar Fields",
  series =    "Trends in Software",
  publisher = "John Wiley & Sons",
}

@InProceedings{SCI:Baj1999d,
  author =    "C.L. Bajaj and V. Pascucci and G. Zhuang",
  title =     "Progressive Compression and Transmission of
              Arbitrary Triangular Meshes",
  booktitle = "Proceedings of the 10th Annual {IEEE} Conference
              on Visualization ({VIS}-99)",
  pages =     "307--316",
  year =      "1999",
  month =     "October 24-29",
  location =  "San Francisco, CA",
}

@InProceedings{SCI:Baj1999e,
  author =    "C.L. Bajaj and V. Pascucci and D. Thompson and
              X.Y. Zhang",
  title =     "Parallel Accelerated Isocontouring for Out-Of-Core
              Visualization",
  booktitle = "Proceedings of First Parallel Visualization and
              Graphics Symposium 1999",
  year =      "1999",
  organization = "IEEE Computer Society",
  month =     "October",
  location =  "San Francisco, CA",
}

@InProceedings{SCI:Baj1999f,
  author =    "C.L. Bajaj and V. Pascucci and G. Zhuang",
  title =     "Single Resolution Compression of Arbitrary
              Triangular Meshes with Properties",
  booktitle = "Proceedings of DCC: Data Compression Conference
              1999",
  year =      "1999",
  organization = "IEEE Computer Society",
  address =   "Snowbird, Utah",
  month =     "March",
}

@InProceedings{SCI:Baj1999g,
  author =    "C.L. Bajaj and S. Cutchin and V. Pascucci and A.
              Paoluzzi and C. Morgia",
  title =     "Web Based Collaborative {CAAD}",
  booktitle = "Proceedings of the 5th Symposium on Solid Modeling
              and Applications",
  year =      "1999",
}

@InProceedings{SCI:Baj1999h,
  author =    "C. Bajaj and V. Pascucci and E. Petajan and G.
              Zhuang",
  title =     "Polygonal Model Coding Evaluation for Low bit-rate
              Communication",
  booktitle = "Proceedings of the International Workshop on
              Synthetic - Natural Hybrid Coding and Three
              Dimensional Imaging",
  year =      "1999",
  month =     "September",
}

@Misc{SCI:Bal2002a,
  author =    "J. Balling and C.R. Johnson",
  title =     "Brain Visualization of Facial Recognition {MRI}
              Data",
  year =      "2002",
  howpublished = "Presented before the Utah State Legislature",
  keywords =  "undergrad, fmri,",
  url =       "http://www.sci.utah.edu/publications/balling02/brain_vis_MRI.pdf",
}

@InProceedings{SCI:Ban1995a,
  author =    "A. Banerjee and G.E. Christensen and J. Haller and
              S. Joshi and M.E. Raichle and M.I. Miller",
  title =     "Accommodating anatomical variability in functional
              imaging via deformable templates",
  booktitle = "Proc. 33rd Annual Allerton Conference on
              Communication, Control and Computing",
  pages =     "275--284",
  year =      "1995",
}

@InProceedings{SCI:Bap2003a,
  author =    "A. Baptista and T. Leen and Y. Zhang and A. Chawla
              and D. Maier and Wu-chang Feng and Wu-chi Feng and
              J. Walpole and C.T. Silva and J. Freire",
  title =     "Environmental Observation and Forecasting Systems:
              Vision, Challenges and Successes of a Prototype",
  booktitle = "Proceedings of the International Society for
              Environmental Information Sciences Annual
              Conference (ISEIS '2003) on Systems Science and
              Information Technology for Environmental
              Applications",
  year =      "2003",
  month =     "July",
  location =  "Regina, Sask, Canada",
}

@Article{SCI:Bap2008a,
  author =    "A. Baptista and B. Howe and J. Freire and D. Maier
              and C.T. Silva",
  title =     "Scientific Exploration in the Era of Ocean
              Observatories",
  journal =   "Computing in Science and Engineering",
  volume =    "10",
  number =    "3",
  pages =     "53--58",
  year =      "2008",
  keywords =  "oceanography, vistrails, provenance",
  url =       "http://www.sci.utah.edu/publications/baptista08/cise2008b.pdf",
}

@Article{SCI:Bar2004a,
  author =    "D. Barbosa and J. Freire and A. Mendelzon",
  title =     "Information Preservation in XML-to-Relational
              Mappings",
  journal =   "Database and XML Technologies",
  volume =    "3186/2004",
  pages =     "66--81",
  year =      "2004",
  series =    "Lecture Notes in Computer Science (LNCS)",
  isbn =      "978-3-540-22969-8",
  url =       "http://www.sci.utah.edu/publications/barbosa04/Barbosa_LNCS2004.pdf",
}

@InProceedings{SCI:Bar2005a,
  author =    "L. Barbosa and A.C. Salgado and F. de Carvalho and
              J. Robin and J. Freire",
  title =     "Looking at both the Present and the Past to
              Efficiently Update Replicas of Web Content",
  booktitle = "Proceedings of the 7th Annual ACM International
              Workshop on Web Information and Data Management",
  pages =     "75--80",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/barbosa05/Barbosa_WWIDM2005a.pdf",
}

@InProceedings{SCI:Bar2005b,
  author =    "D. Barbosa and J. Freire and A. Mendelzon",
  title =     "Designing Information-Preserving Mapping Schemes
              for XML",
  booktitle = "Proceedings of the 31st International Conference
              on Very Large Data Bases",
  pages =     "109--120",
  year =      "2005",
  location =  "Trondheim, Norway",
  url =       "http://www.sci.utah.edu/publications/barbosa05/Barbosa_VLDB2005.pdf",
}

@InProceedings{SCI:Bar2006a,
  author =    "L. Barbosa and J. Freire",
  title =     "Automatically Constructing Collections of Online
              Databases",
  booktitle = "Proceedings of the 15th ACM International
              Conference on Information and Knowledge Management
              (CIKM)",
  pages =     "796--797",
  year =      "2006",
  location =  "Arlington",
  url =       "http://www.sci.utah.edu/publications/barbosa06/Barbosa_CIKM2006a.pdf",
}

@InProceedings{SCI:Bar2007a,
  author =    "L. Barbosa and J. Freire",
  title =     "An Adaptive Crawler for Locating Hidden-Web Entry
              Points",
  booktitle = "Proceedings of the 16th international conference
              on World Wide Web (WWW)",
  pages =     "441--450",
  year =      "2007",
  month =     "May",
  location =  "Banff, Alberta, Canada",
  url =       "http://www.sci.utah.edu/publications/barbosa07/Barbosa_WWW2007a.pdf",
}

@InProceedings{SCI:Bar2007b,
  author =    "L. Barbosa and J. Freire",
  title =     "Combining Classifiers to Identify Online
              Databases",
  booktitle = "Proceedings of the 16th International Conference
              on World Wide Web (WWW)",
  pages =     "431--440",
  year =      "2007",
  month =     "May",
  location =  "Banff, Alberta, Canada",
  url =       "http://www.sci.utah.edu/publications/barbosa07/Barbosa_WWW2007b.pdf",
}

@InProceedings{SCI:Bar2007c,
  author =    "L. Barbosa and J. Freire and A. Silva",
  title =     "Organizing Hidden-Web Databases by Clustering
              Visible Web Documents",
  booktitle = "Proceedings of the IEEE 23rd International
              Conference on Data Engineering, 2007. (ICDE
              2007)",
  pages =     "326--335",
  year =      "2007",
  location =  "Istanbul",
  url =       "http://www.sci.utah.edu/publications/barbosa07/Barbosa_ICDE2007.pdf",
}

@Article{SCI:Bar2007d,
  author =    "L. Barbosa and S. Tandon and J. Freire",
  title =     "Automatically Constructing a Directory of
              Molecular Biology Databases",
  journal =   "Data Integration in the Life Sciences",
  volume =    "4544/2007",
  pages =     "6--16",
  year =      "2007",
  series =    "Lecture Notes in Computer Science (LNCS)",
  isbn =      "978-3-540-73254-9",
  url =       "http://www.sci.utah.edu/publications/barbosa07/Barbosa_LNCS2007.pdf",
}

@InProceedings{SCI:Bas2006a,
  author =    "S. Basu and P.T. Fletcher and R.T. Whitaker",
  title =     "Rician Noise Removal in Diffusion Tensor MRI",
  booktitle = "Medical Image Computing and Computer Assisted
              Intervention (MICCAI)",
  volume =    "LNCS 4190",
  pages =     "117--125",
  year =      "2006",
  month =     "October",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/basu06/BasuDTIFilteringMICCAI2006.pdf",
}

@InProceedings{SCI:Bav2005a,
  author =    "L. Bavoil and S.P. Callahan and P.J. Crossno and
              J. Freire and C.E. Scheidegger and C.T. Silva and
              H.T. Vo",
  title =     "Vistrails: Enabling Interactive Multiple-View
              Visualizations",
  booktitle = c-VIS2005,
  pages =     "18",
  year =      "2005",
  keywords =  "scientific visualization, pses",
  url =       "http://www.sci.utah.edu/publications/bavoil05/vistrails.pdf",
}

@TechReport{SCI:Bav2006a,
  author =    "L. Bavoil and S.P. Callahan and C.T. Silva",
  title =     "Robust Soft Shadow Mapping with Depth Peeling",
  number =    "UUSCI-2006-028",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-028.pdf",
}

@TechReport{SCI:Bav2006b,
  author =    "L. Bavoil and S.P. Callahan and A. Lefohn and
              J.L.D. Comba and C.T. Silva",
  title =     "Multi-Fragment Effects on the GPU using the
              k-Buffer",
  number =    "UUSCI-2006-032",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-032.pdf",
}

@InProceedings{SCI:Bav2007a,
  author =    "L. Bavoil and S.P. Callahan and A. Lefohn and
              J.L.D. Comba and C.T. Silva",
  title =     "Multi-Fragment Effects on the GPU using the
              k-Buffer",
  booktitle = "{ACM} Symposium on Interactive {3D} Graphics and
              Games (i3D)",
  pages =     "97--104",
  year =      "2007",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/bavoil07/kbuffer_preprint.pdf",
}

@Article{SCI:Bav2008a,
  author =    "L. Bavoil and S.P. Callahan and and C.T. Silva",
  title =     "Robust Soft Shadow Mapping with Depth Peeling",
  journal =   "Journal of Graphics Tools",
  volume =    "13",
  number =    "1",
  pages =     "19--30",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/bavoil08/jgt08.pdf",
}

@InProceedings{SCI:Bea96a,
  author =    "D.M. Beazley",
  title =     "Using SWIG to control, prototype, and debug C
              programs with Python",
  booktitle = "4th International Python Conference",
  year =      "1996",
}

@Article{SCI:Bea97,
  author =    "D.M. Beazley",
  title =     "Using SWIG to control, prototype, and debug C
              program with Python",
  journal =   "4th International Python Conference",
  year =      "1997",
  keywords =  ", swig. python",
}

@Proceedings{SCI:Beb2006a,
  title =     "Advances in Visual Computing, Second International
              Symposium, {ISVC} 2006, Lake Tahoe, {NV}, {USA},
              November 6-8, 2006 Proceedings, Part {I}",
  booktitle = "ISVC (1)",
  volume =    "4291",
  year =      "2006",
  editor =    "George Bebis and Richard Boyle and Bahram Parvin
              and Darko Koracin and Paolo Remagnino and Ara V.
              Nefian and Meenakshisundaram Gopi and Valerio
              Pascucci and Jiri Zara and Jose Molineros and
              Holger Theisel and Thomas Malzbender",
  series =    "Lecture Notes in Computer Science",
  publisher = "Springer",
  isbn =      "3-540-48628-3",
}

@Proceedings{SCI:Beb2006b,
  title =     "Advances in Visual Computing, Second International
              Symposium, {ISVC} 2006 Lake Tahoe, {NV}, {USA},
              November 6-8, 2006. Proceedings, Part {II}",
  booktitle = "ISVC (2)",
  volume =    "4292",
  year =      "2006",
  editor =    "George Bebis and Richard Boyle and Bahram Parvin
              and Darko Koracin and Paolo Remagnino and Ara V.
              Nefian and Meenakshisundaram Gopi and Valerio
              Pascucci and Jiri Zara and Jose Molineros and
              Holger Theisel and Thomas Malzbender",
  series =    "Lecture Notes in Computer Science",
  publisher = "Springer",
  isbn =      "3-540-48628-3",
}

@Article{SCI:Bel2007a,
  author =    "M.K. Belmonte and J.C. Mazziotta and N.J. Minshew
              and A.C. Evans and E. Courchesne and S.R. Dager and
              S.Y. Bookheimer and E.H. Aylward and D.G. Amaral
              and R.M. Cantor and D.C. Chugani and A.M. Dale and
              C. Davatzikos and G. Gerig and M.R. Herbert and
              J.E. Lainhart and D.G. Murphy and J. Piven and A.L.
              Reiss and R.T. Schultz and T.A. Zeffiro and S.
              Levi-Pearl and C. Lajonchere and S.A. Colamarino",

  title =     "Offering to Share: How to Put Heads Together in
              Autism Neuroimaging",
  journal =   "Journal of Autism and Developmental Disorders
              JADD",
  volume =    "38",
  pages =     "2--13",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/belmonte08/Belmonte_JADD2007.pdf",
}

@InProceedings{SCI:Ben2002a,
  author =    "M. Benedikt and J. Freire and P. Godefroid",
  title =     "VeriWeb: Automatically Testing Dynamic Web
              Sites",
  booktitle = "In Proceedings of 11th International World Wide
              Web Conference 2002",
  year =      "2002",
  url =       "http://www.sci.utah.edu/publications/benedikt02/veriweb-www2002.pdf",
}

@InProceedings{SCI:Ben2003a,
  author =    "M. Benedikt and C.Y. Chan and W. Fan and J. Freire
              and R. Rastogi",
  title =     "Capturing Both Types and Constraints in Data
              Integration",
  booktitle = "Proceedings of the 2003 ACM SIGMOD International
              Conference on Management of Data",
  pages =     "277--288",
  year =      "2003",
  isbn =      "1-58113-634-X",
  url =       "http://www.sci.utah.edu/publications/benedikt03/Benedikt_SIGMOD2003.pdf",
}

@Article{SCI:Ben2006a,
  author =    "C. Benthin and I. Wald and P. Slusallek",
  title =     "Techniques for Interactive Ray Tracing of Bezier
              Surfaces",
  journal =   "Journal of Graphics Tools",
  volume =    "11",
  number =    "2",
  pages =     "1--16",
  year =      "2006",
  keywords =  "rtcenter",
}

@InProceedings{SCI:Ben2006b,
  author =    "C. Benthin and I. Wald and M. Scherbaum and H.
              Friedrich",
  title =     "Ray Tracing on the CELL Processor",
  booktitle = "Proceedings of the 2006 IEEE Symposium on
              Interactive Ray Tracing",
  pages =     "25--32",
  year =      "2006",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/benthin06/cell.pdf",
}

@TechReport{SCI:Ben2007a,
  author =    "C. Benthin and S. Boulos and D. Lacewell and I.
              Wald",
  title =     "Packet-based Ray Tracing of Catmull-Clark
              Subdivision Surfaces",
  number =    "UUSCI-2007-011",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-011.pdf",
}

@InProceedings{SCI:Ben2007b,
  author =    "J. Bennett and V. Pascucci and K.I. Joy",
  title =     "Genus Oblivious Cross Parameterization: Robust
              Topological Management of Intersurface Maps",
  booktitle = "Proceedings of Pacific Graphics 2007",
  year =      "2007",
}

@InProceedings{SCI:Ben2011a,
  author =    "J.C. Bennett and V. Krishnamoorthy and S. Liu and
              R.W. Grout and E.R. Hawkes and J.H. Chen and J.
              Shepherd and V. Pascucci and P.-T. Bremer",
  title =     "Feature-Based Statistical Analysis of Combustion
              Simulation Data",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics, Proceedings of the 2011 IEEE
              Visualization Conference",
  volume =    "17",
  number =    "12",
  pages =     "1822--1831",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/bennett11/Bennett_VIS2011.pdf",
}

@InProceedings{SCI:Ber1993a,
  author =    "F. Bernardini and V. Ferrucci and A. Paoluzzi and
              V. Pascucci",
  title =     "Product Operator on Cell Complexes",
  booktitle = "SMA '93: Proceedings of the Second Symposium on
              Solid Modeling and Applications",
  pages =     "43--52",
  year =      "1993",
  organization = "ACM",
  month =     "May",
  note =      "held May 19-21, 1993 in Montreal, Quebec,
              Canada",
}

@Article{SCI:Ber1994a,
  author =    "M. Berzins and J.M. Ware",
  title =     "Reliable Finite Volume Methods for the Navier
              Stokes Equations.",
  journal =   "Numerical Methods for the Navier Stokes
              Equations",
  number =    "47",
  pages =     "1-8",
  year =      "1994",
  editor =    "F.K. Hebeker, R. Rannacher and G. Wittum",
  series =    "Notes on Numerical Fluid Mechanics",
  publisher = "Vieweg",
  url =       "http://www.sci.utah.edu/publications/berzins94/heidelb.pdf",
}

@Article{SCI:Ber1995a,
  author =    "M. Berzins and J.M. Ware",
  title =     "Positive Cell Centered Finite Volume
              Discretisation Methods for Hyperbolic Equations on
              Irregular Meshes",
  journal =   "Applied Numerical Mathematics",
  volume =    "16",
  pages =     "417--438",
  year =      "1995",
  url =       "http://www.sci.utah.edu/publications/berzins95/theory4.pdf",
}

@Misc{SCI:Ber1996b,
  author =    "M. Berzins and P. Pratt",
  title =     "A Problem Solving Environment for Convection
              Dominated {PDE}s",
  year =      "1996",
  month =     "September",
  keywords =  "computational pde pdes computational partial
              differential equations, pse grid computing,
              sprint2d",
  url =       "http://www.sci.utah.edu/publications/berzins96/berzins96problem.pdf",
}

@Article{SCI:Ber1996c,
  author =    "M. Berzins and T.H.C. Childs and G.R. Ryder",
  title =     "The Selective Laser Sintering of Polycarbonate",
  journal =   "CIRP Annals",
  volume =    "45",
  number =    "1",
  pages =     "187--190",
  year =      "1996",
  issn =      "0007-8506",
  doi =       "10.1016/S0007-8506(07)63044-3",
  url =       "http://www.sci.utah.edu/publications/berzins96/MBTHCGRR96.pdf",
}

@Article{SCI:Ber1997c,
  author =    "M. Berzins and P.J. Capon and P.K. Jimack",
  title =     "On Spatial Adaptivity and Interpolation when Using
              the Method of Lines",
  journal =   "Applied Numerical Mathematics: Transactions of
              IMACS",
  volume =    "26",
  number =    "1--2",
  pages =     "117--133",
  year =      "1997",
  url =       "http://www.sci.utah.edu/publications/berzins97/berzins91spatial.pdf",
}

@InProceedings{SCI:Ber1999a,
  author =    "M. Berzins and L.J.K. Durbeck",
  title =     "Unstructured Mesh Methods Applied to Hyperbolic
              {PDE}s with Source Terms: Error Estimates and Mesh
              Quality",
  booktitle = "Godunov Methods: Theory and Applications
              Conference and Short Course",
  year =      "1999",
  publisher = "Oxford. numeritek Ltd.URL",
  month =     "October",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, scirun, atmospherics
              weather meterology",
  url =       "http://www.sci.utah.edu/publications/berzins99/unstructured-mesh-methods-applied.pdf",
}

@InCollection{SCI:Ber2000a,
  author =    "M. Berzins and L. Durbeck and P.K. Jimack and M.
              Walkley",
  title =     "Mesh Quality and Moving and Meshes for 2D and 3D
              Unstructured Mesh Solvers",
  booktitle = "Von Karman Institute for Fluid Mechanics 31st
              Lecture Series on Computational Fluid Mechanics",
  year =      "2000",
  editor =    "N.P. Weatherill and H. Deconinck",
  institution = "Von Karman Institute for Fluid Mechanics",
  month =     "March",
  issn =      "0377-8312",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, atmospherics weather
              meterology, scientific computing",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/vki_00.ps",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/vki_00.pdf",
}

@Article{SCI:Ber2000b,
  author =    "M. Berzins",
  title =     "An Introduction to Mesh Quality",
  journal =   "Lectures notes for 31st Lecture Series on
              Computational Fluid Mechanics",
  pages =     "21 pages",
  year =      "2000",
  editor =    "N.P. Weatherill and H. Deconink",
  institution = "Von Karman Institute for Fluid Mechanics",
  month =     "March",
  location =  "Rhode st Genessee, Brussels, Belgium",
  issn =      "0377-8312",
  url =       "http://www.sci.utah.edu/publications/berzins00/vkione.pdf",
}

@Article{SCI:Ber2000d,
  author =    "M. Berzins",
  title =     "Solution-Based Mesh Quality Indicators for
              Triangular and Tetrahedral Meshes",
  journal =   "International Journal of Computational Geometry
              and Applications",
  volume =    "10",
  number =    "3",
  pages =     "333-346",
  year =      "2000",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/berzins00/CompG.pdf",
}

@Article{SCI:Ber2000e,
  author =    "M. Berzins",
  title =     "A New Metric for Dynamic Load Balancing",
  journal =   "Applied Mathematical Modelling",
  volume =    "25",
  pages =     "141--151",
  year =      "2000",
  note =      "Special issue on dynamic load balancing",
  url =       "http://www.sci.utah.edu/publications/berzins00/apmathmodv2.pdf",
}

@Article{SCI:Ber2000g,
  author =    "M. Berzins",
  title =     "A Data-Bounded Quadratic Interpolant on Triangles
              and Tetrahedra",
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "22",
  number =    "1",
  pages =     "177--197",
  year =      "2000",
  url =       "http://www.sci.utah.edu/publications/berzins00/finalout.pdf",
}

@InProceedings{SCI:Ber2001a,
  author =    "M. Bertram and D. Laney and M. Duchaineau and C.D.
              Hansen and B. Hamann and K. Joy",
  title =     "Wavelet Representation of Contour Sets",
  booktitle = c-VIS2001,
  pages =     "303--310, 566",
  year =      "2001",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, ip image
              processing signal processing, surface processing",

  url =       "http://www.sci.utah.edu/publications/bertram01/vis01-bertram.pdf",
}

@InCollection{SCI:Ber2001b,
  author =    "M. Berzins and A.S. Tomlin and S. Ghorai and I.
              Ahmad J.Ware",
  title =     "Unstructured Mesh Adaptive Mesh {MOL} Solvers for
              Atmospheric Reacting Flow Problems",
  booktitle = "The Adaptive Method of Lines",
  pages =     "317--351",
  year =      "2001",
  editor =    "A. Vande Wouwer, Ph. Saucez and W. Schiesser",
  publisher = "CRC Press, Boca Raton, Florida, USA.",
  note =      "invited chapter",
  isbn =      "1-58488-231-X",
  url =       "http://www.sci.utah.edu/publications/berzins01/mbmolch.pdf",
}

@InCollection{SCI:Ber2001c,
  author =    "M. Berzins and L. Durbeck",
  title =     "Unstructured Mesh Solvers for Hyperbolic PDEs with
              Source Terms: Error Estimates and Mesh Quality",
  booktitle = "Godunonv Methods: Theory and Applications",
  pages =     "117--124",
  year =      "2001",
  editor =    "E. Toro et al.",
  publisher = "Kluwer Academic/Plenum",
  note =      "Proc. of Godunov Conf. October 18-22, Oxford UK",
  url =       "http://www.sci.utah.edu/publications/berzins01/mbgodunov.pdf",
}

@Article{SCI:Ber2001d,
  author =    "M. Berzins",
  title =     "Modified Mass Matrices and Positivity Preservation
              for Hyperbolic and Parabolic {PDE}s",
  journal =   "Communications in Numerical Methods in
              Engineering",
  volume =    "17",
  pages =     "659--666",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/berzins01/austpapv3.pdf",
}

@Article{SCI:Ber2003b,
  author =    "M. Berzins and A.G. Wilson",
  title =     "Spatial Interaction Models and Fisher Information
              Theory A New Calibration Model",
  journal =   "Environment and Planning",
  volume =    "35",
  pages =     "2161--2176",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/berzins03/MBAGWFINALDRAFT.pdf",
}

@InProceedings{SCI:Ber2003c,
  author =    "M. Bertram and X. Tricoche and H. Hagen",
  title =     "Adaptive Smooth Scattered Data Approximation for
              Largescale Terrain Visualization",
  booktitle = "Proceedings of the Joint Eurographics-IEEE TCVG
              Symposium on Visualization: Data Visualization
              2003",
  pages =     "177--184",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/bertram03/terrain.pdf",
}

@TechReport{SCI:Ber2004a,
  author =    "F.F. Bernardon and C.A. Pagot and J.L.D. Comba and
              C.T. Silva",
  title =     "{GPU}-based Tiled Ray Casting using Depth
              Peeling",
  number =    "UUSCI-2004-006",
  year =      "2004",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2004-006.pdf",
}

@Article{SCI:Ber2004b,
  author =    "M. Berzins",
  title =     "Variable Order Finite Elements and Positivity
              Preservation for Hyperbolic PDEs",
  journal =   "Applied Numerical Mathematics",
  volume =    "48",
  number =    "3-4",
  pages =     "253--439",
  year =      "2004",
  month =     "March",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational pde pdes computational partial
              differential equations",
  url =       "http://www.sci.utah.edu/publications/berzins04/HPhyp.pdf",
}

@InProceedings{SCI:Ber2005a,
  author =    "F. Bertrand and R. Bramley and K. Damevski and D.
              Bernholdt and J. Kohl and J. Larson and A.
              Sussman",
  title =     "Data Redistribution and Remote Method Invocation
              in Parallel Component Architectures",
  booktitle = c-IPDPS2005,
  volume =    "1",
  pages =     "40--42",
  year =      "2005",
  note =      "Awarded Best Paper",
}

@TechReport{SCI:Ber2005b,
  author =    "F.F. Bernardon and S.P. Callahan and J.L.D. Comba
              and C.T. Silva",
  title =     "Volume Rendering of Time-Varying Scalar Fields on
              Unstructured Meshes",
  number =    "UUSCI-2005-006",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scalar field methods, volume rendering",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-006.pdf",
}

@InProceedings{SCI:Ber2005c,
  author =    "M. Berzins and R.M. Kirby and C.R. Johnson",
  title =     "Integrating Teaching and Research in HPC:
              Experiences and Opportunities",
  booktitle = c-ICCS2005,
  pages =     "36--43",
  year =      "2005",
  location =  "Atlanta, GA",
  url =       "http://www.sci.utah.edu/publications/berzins05/Teaching_and_Research_HPC.pdf",
}

@Article{SCI:Ber2005d,
  author =    "M. Berzins",
  title =     "Preserving Positivity for Hyperbolic PDEs Using
              Variable-Order Finite Elements with Bounded
              Polynomials",
  journal =   "Applied Numerical Mathematics",
  volume =    "52",
  number =    "2-3",
  pages =     "197--217",
  year =      "2005",
  month =     "February",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational pde pdes computational partial
              differential equations",
  url =       "http://www.sci.utah.edu/publications/berzins05/GENhp.pdf",
}

@InProceedings{SCI:Ber2006a,
  author =    "F.F. Bernardon and S.P. Callahan and J.L.D. Comba
              and C.T. Silva",
  title =     "Interactive Volume Rendering of Unstructured Grids
              with Time-Varying Scalar Fields",
  booktitle = "Proceedings of the Eurographics Symposium on
              Parallel Graphics and Visualization",
  pages =     "51--58",
  year =      "2006",
  keywords =  "scalar field methods, volume rendering",
  url =       "http://www.sci.utah.edu/publications/bernardon06/egpgv2006.pdf",
}

@InProceedings{SCI:Ber2006b,
  author =    "M. Berzins",
  title =     "Is there Still More to Science than Simulation?",
  number =    "UUSCI-2006-031",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-031.pdf",
}

@TechReport{SCI:Ber2006c,
  author =    "M. Berzins",
  title =     "Adaptive Polynomial Interpolation on Evenly Spaced
              Meshes",
  number =    "UUSCI-2006-033",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-033.pdf",
}

@Article{SCI:Ber2007a,
  author =    "F.F. Bernardon and S.P Callahan and J.L.D. Comba
              and C.T. Silva",
  title =     "An Adaptive Framework for Visualizing Unstructured
              Grids with Time-Varying Scalar Fields",
  journal =   "Journal on Parallel Computing",
  volume =    "33",
  number =    "6",
  pages =     "391--405",
  year =      "2007",
  keywords =  "vacet",
  url =       "http://www.sci.utah.edu/publications/bernardon07/parco07.pdf",
}

@TechReport{SCI:Ber2007b,
  author =    "F.F. Bernardon and L.K. Ha and S.P. Callahan and
              J.L.D. Comba and C.T. Silva",
  title =     "Interactive Transfer Function Specification for
              Direct Volume Rendering of Disparate Volumes",
  number =    "UUSCI-2007-007",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "volume rendering, transfer functions",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-007.pdf",
}

@Article{SCI:Ber2007c,
  author =    "M. Berzins",
  title =     "Is there Still More to Science than
              Computation?",
  journal =   "Computing in Science and Engineering",
  volume =    "9",
  number =    "1",
  pages =     "98--101",
  year =      "2007",
  keywords =  "scientific computing",
  url =       "http://www.sci.utah.edu/publications/berzins07/CISEPAPER.pdf",
}

@Article{SCI:Ber2007d,
  author =    "M. Berzins",
  title =     "Adaptive Polynomial Interpolation on Evenly Spaced
              Meshes.",
  journal =   "SIAM Review",
  volume =    "49",
  number =    "4",
  pages =     "604-627",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/berzins07/SIpapv4.pdf",
}

@TechReport{SCI:Ber2009a,
  author =    "M. Berzins",
  title =     "Data Bounded Polynomials and Preserving Positivity
              in High Order ENO and WENO Methods",
  number =    "UUSCI-2009-003",
  year =      "2009",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2009-003.pdf",
}

@InProceedings{SCI:Ber2010a,
  author =    "M. Berger and L.G. Nonato and V. Pascucci and C.T.
              Silva",
  title =     "Fiedler Trees for Multiscale Surface Analysis",
  booktitle = "Computers & Graphics",
  volume =    "34",
  number =    "3",
  pages =     "272--281",
  year =      "2010",
  location =  "London, UK",
  note =      "Special Issue of Sha",
  url =       "http://www.sci.utah.edu/publications/berger10/Berger_htpaper2010.pdf",
}

@InProceedings{SCI:Ber2010b,
  author =    "M. Berzins and J. Luitjens and Q. Meng and T.
              Harman and C.A. Wight and J.R. Peterson",
  title =     "Uintah - A Scalable Framework for Hazard
              Analysis",
  booktitle = "Proceedings of the Teragrid 2010 Conference, TG
              10",
  number =    "3",
  pages =     "(published online)",
  year =      "2010",
  month =     "July",
  note =      "Awarded Best Paper in the Science Track!",
  isbn =      "978-1-60558-818-6",
  keywords =  "Uintah, csafe",
  url =       "http://www.sci.utah.edu/publications/berzins10/Tgrid10PAPPSv4.pdf",
}

@Article{SCI:Ber2010c,
  author =    "M. Berzins",
  title =     "Nonlinear Data-Bounded Polynomial Approximations
              and their Applications in ENO Methods",
  journal =   "Numerical Algorithms",
  volume =    "55",
  number =    "2",
  pages =     "171",
  year =      "2010",
  keywords =  "Data bounded polynomials, Essentially
              non-oscillatory methods",
  url =       "http://www.sci.utah.edu/publications/berzins10/Berzins_NA1020a.pdf",
}

@TechReport{SCI:Ber2011a,
  author =    "M. Berger and J.A. Levine and L.G. Nonato and G.
              Taubin and C.T. Silva",
  title =     "An End-to-End Framework for Evaluating Surface
              Reconstruction",
  number =    "UUSCI-2011-001",
  year =      "2011",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2011-001.pdf",
}

@InProceedings{SCI:Ber2011b,
  author =    "M. Berzins and Q.Meng and J.Schmidt and J.
              Sutherland",
  title =     "DAG-Based Software Frameworks for PDEs",
  booktitle = "Proceedings of HPSS 2011",
  pages =     "(to appear)",
  year =      "2011",
  publisher = "Springer",
  month =     "August",
  location =  "Europar Bordeaux",
  keywords =  "DOD, Uintah, CSAFE",
  url =       "http://www.sci.utah.edu/publications/berzins11/Berzins_HPSS2011.pdf",
}

@Article{SCI:Ber2011c,
  author =    "M.L. Berlanga and S. Phan and E.A. Bushong and S.
              Lamont and S. Wu and O. Kwon and B.S. Phung and M.
              Terada and T. Tasdizen and E. Martone and M.H.
              Ellisman",
  title =     "Three-dimensional reconstruction of serial mouse
              brain sections using high-resolution large-scale
              mosaics",
  journal =   "Frontiers in Neuroscience Methods",
  pages =     "(published online)",
  year =      "2011",
  month =     "March",
  doi =       "10.3389/fnana.2011.00017",
  url =       "http://www.sci.utah.edu/publications/berlanga11/fnana-05-00017.pdf",
}

@Article{SCI:Ber80a,
  author =    "M. Berzins and P.M. Dew",
  title =     "A note on the extension of the Chebyshev method to
              quasi-linear parabolic {P.D.E}.s.",
  journal =   "International Journal on Computer Mathematics",
  volume =    "8",
  pages =     "249--263",
  year =      "1980",
}

@Article{SCI:Ber81a,
  author =    "M. Berzins and P.M. Dew",
  title =     "A Generalized Chebyshev Method for Non-linear
              Parabolic Equations in One Space Variable",
  journal =   "I.M.A. Journal on Numerical Analysis",
  volume =    "1",
  pages =     "469--487",
  year =      "1981",
}

@Article{SCI:Ber83a,
  author =    "M. Berzins and P.M. Dew and R.M. Furzeland",
  title =     "Software for time-dependent problems",
  journal =   "{P.D.E.} Software: Modules, Interfaces and
              Systems; Proc. of 1983 {IFIPS} Conference",
  year =      "1983",
  editor =    "B. Engquist and J. Rice",
  location =  "North Holland",
}

@Article{SCI:Ber84a,
  author =    "M. Berzins and T.F. Buckley and P.M. Dew",
  title =     "Path Pascal Simulation of Multi-Processor Lattice
              Architectures for Numerical Computations",
  journal =   "Progress in the Use of Vector and Array
              processors",
  year =      "1984",
  editor =    "D.J. Paddon and J.D. Pryce",
  publisher = "Academic Press",
}

@Article{SCI:Ber86a,
  author =    "M. Berzins",
  title =     "A C1 Interpolant for Codes Based on Backward
              Differentiation Formulae",
  journal =   "Applied Numerical Mathematics",
  volume =    "2",
  pages =     "109--118",
  year =      "1986",
}

@Article{SCI:Ber87a,
  author =    "M. Berzins and P.M. Dew",
  title =     "A Note on C0 Chebyshev Methods for Parabolic
              Equations",
  journal =   "I.M.A. Journal of Numerical Analysis",
  volume =    "7",
  pages =     "15--37",
  year =      "1987",
}

@Article{SCI:Ber88b,
  author =    "M. Berzins",
  title =     "Global Error Estimation in the Method of Lines for
              Parabolic Equations",
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "9",
  pages =     "687--703",
  year =      "1988",
}

@Article{SCI:Ber88c,
  author =    "M. Berzins and R. Brankin and I. Gladwell",
  title =     "Design of Stiff Integrators in the {N.A.G.}
              Library",
  journal =   "Signum Bulletin",
  volume =    "23",
  number =    "2",
  pages =     "16--24",
  year =      "1988",
  month =     "April",
}

@Article{SCI:Ber89a,
  author =    "M. Berzins",
  title =     "Developments in {NAG} Library Software for
              Parabolic Equations",
  journal =   "Scientific Software Systems",
  pages =     "59--72",
  year =      "1989",
  editor =    "J.C. Mason and M.G. Cox",
  publisher = "Chapman and Hall",
  month =     "July",
  isbn =      "0412345706",
}

@Article{SCI:Ber89b,
  author =    "M. Berzins and P.M. Dew and R.M. Furzeland",
  title =     "Developing Software for Time-Dependent Problems
              Using the Method of Lines and Differential
              Algebraic Integrators",
  journal =   "Applied Numerical Mathematics",
  volume =    "5",
  pages =     "375--397",
  year =      "1989",
}

@Article{SCI:Ber90a,
  author =    "M. Berzins and A.J. Preston and P.M. Dew",
  title =     "Integration Algorithms for the Dynamic Simulation
              of Production Processes",
  journal =   "Proc of Third European Conference for Mathematics
              in Industry",
  pages =     "265--271",
  year =      "1990",
  editor =    "J. Manley et al.",
  publisher = "Kluwer Academic Publishers, Stuttgart.",
}

@Article{SCI:Ber91a,
  author =    "M. Berzins and P. Baehmann and J.E. Flaherty and
              J. Lawson",
  title =     "Towards An Automated Finite Element Solver for
              Time-Dependent Fluid-Flow Problems",
  journal =   "MAFELAP 90",
  pages =     "181--188",
  year =      "1991",
  editor =    "J.R. Whiteman",
  publisher = "Academic Press",
}

@Article{SCI:Ber91b,
  author =    "M. Berzins and P.M. Dew",
  title =     "Chebyshev Polynomial Software for
              Elliptic-Parabolic Systems of {P.D.E.}s",
  journal =   "{A.C.M.} Transactions on Mathematical Software",
  volume =    "17",
  number =    "2",
  pages =     "178--206",
  year =      "1991",
  month =     "June",
}

@InProceedings{SCI:Ber92b,
  author =    "M. Berzins and A.J. Preston and P.M. Dew and L.E.
              Scales",
  title =     "Towards Efficient {D.A.E.} Solvers for the
              Solution of Dynamic Simulation Problems",
  booktitle = "Proc of {I.M.A.} 1989 {O.D.E.} Conference",
  pages =     "299--308",
  year =      "1992",
  editor =    "I. Gladwell, J. Cash and A. Iserles",
  publisher = "Oxford University Press",
  isbn =      "0-19-853659-3",
}

@Article{SCI:Ber92c,
  author =    "M. Berzins and R.M. Furzeland",
  title =     "An Adaptive Theta Method for the Solution of Stiff
              and Non-stiff Differential Equations",
  journal =   "Applied Numerical Mathematics",
  volume =    "9",
  pages =     "1--19",
  year =      "1992",
}

@Article{SCI:Ber92d,
  author =    "M. Berzins and P.M. Dew and S. Hillen",
  title =     "Exploiting Parallelism for Adaptive {CFD}
              Software",
  journal =   "Parallelogram",
  pages =     "14--16",
  year =      "1992",
  month =     "February",
}

@Article{SCI:Ber93a,
  author =    "M. Berzins and J.M. Ware",
  title =     "Reliable Finite Volume Methods for Time-Dependent
              Partial Differential Equations",
  journal =   "MAFELAP 1993 Highlights",
  pages =     "299--306",
  year =      "1993",
  editor =    "J.R. Whiteman, John Wiley",
}

@InProceedings{SCI:Ber95a,
  author =    "M. Berzins and T.H.C. Childs and K.W. Dalgarno and
              G.R. Ryder and G. Stein",
  title =     "Densification and Distortion in Selective Laser
              Sintering of Polycarbonate",
  booktitle = "Proc 6th Symposium on Solid Free Form
              Fabrication",
  pages =     "196--203",
  year =      "1995",
  editor =    "J.W. Barlow et al.",
  location =  "University of Texas at Austin",
  url =       "http://www.sci.utah.edu/publications/berzins95/1995-24-Berzins.pdf",
}

@Article{SCI:Ber95c,
  author =    "M. Berzins",
  title =     "Temporal Error Control in the Method of Lines for
              Convection Dominated Equations",
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "16",
  pages =     "558--580",
  year =      "1995",
  url =       "http://www.sci.utah.edu/publications/berzins95/SIAMhypbal4.pdf",
}

@Article{SCI:Ber95d,
  author =    "M. Berzins and J.M. Ware",
  title =     "Positive Cell Centered Finite Volume
              Discretisation Methods for Hyperbolic Equations on
              Irregular Meshes",
  journal =   "Applied Numerical Mathematics",
  volume =    "16",
  pages =     "417--438",
  year =      "1995",
}

@Article{SCI:Ber96a,
  author =    "M. Berzins and J.M. Ware",
  title =     "Solving Convection and Convection Reaction
              Problems Using the M.O.L.",
  journal =   "Applied Numerical Mathematics",
  volume =    "20",
  pages =     "83--99",
  year =      "1996",
  url =       "http://www.sci.utah.edu/publications/berzins96/molpap.pdf",
}

@Article{SCI:Ber97b,
  author =    "M. Berzins and S.V. Pennington and P.R. Pratt and
              J.M. Ware",
  title =     "{SPRINT2D} Software for Convection Dominated
              {PDE}s",
  journal =   "Modern Software Tools in Scientific Computing",
  year =      "1997",
  editor =    "E. Arge, A.M. Bruaset and H.P. Langtangen",
  publisher = "Birkhauser Press",
  url =       "http://www.sci.utah.edu/publications/berzins97/Berzins_SPRINT2D.pdf",
}

@Article{SCI:Ber98b,
  author =    "M. Berzins and P.J. Capon and P.K. Jimack",
  title =     "On Spatial Adaptivity and Interpolation When Using
              the Method of Lines",
  journal =   "Applied Numerical Mathematics",
  volume =    "26",
  pages =     "117--134",
  year =      "1998",
  url =       "http://www.sci.utah.edu/publications/berzins98/berzins91spatial.pdf",
}

@Article{SCI:Ber98c,
  author =    "M. Berzins",
  title =     "A Solution-Based Triangular and Tetrahedral Mesh
              Quality Indicator",
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "19",
  pages =     "2051--2060",
  year =      "1998",
  url =       "http://www.sci.utah.edu/publications/berzins98/SISC19.pdf",
}

@Article{SCI:Ber98d,
  author =    "M. Berzins and R. Fairlie and S.V. Pennington and
              J.M. Ware and L.E. Scales",
  title =     "{SPRINT2D}: Adaptive Software for {PDE}s",
  journal =   "{ACM} Transactions on Mathematical Software",
  volume =    "24",
  number =    "4",
  pages =     "475--499",
  year =      "1998",
  month =     "December",
  keywords =  "computational pde pdes computational partial
              differential equations",
  url =       "http://www.sci.utah.edu/publications/berzins98/berzins98sprintd.pdf",
}

@Article{SCI:Ber99c,
  author =    "M. Berzins and J. Nash and P. Selwood",
  title =     "Parallel Solution of Reacting Flow Problems using
              Unstructured Tetrahedral Meshes",
  journal =   "Proceedings of 9th {SIAM} Parallel Processing for
              Scientific Computing",
  year =      "1999",
  location =  "Philadelphia, PA",
  isbn =      "0-89871-435-4",
}

@Article{SCI:Ber99d,
  author =    "M. Berzins",
  title =     "Mesh Quality - Geometry, Error Estimates or
              Both?",
  journal =   "Engineering and Computers",
  volume =    "15",
  pages =     "236--247",
  year =      "1999",
  url =       "http://www.sci.utah.edu/publications/berzins99/MESHQUALITY.pdf",
  url =       "http://www.sci.utah.edu/publications/berzins99/Engwcomp.pdf",
}

@Article{SCI:Bet2006a,
  author =    "W. Bethel and C.R. Johnson and C.D. Hansen and
              S.G. Parker and A.R. Sanderson and C.T. Silva and
              X. Tricoche and V. Pascucci and H. Childs and J.
              Cohen and M. Duchaineau and D. Laney and P.
              Lindstrom and S. Ahern and J. Meredith and G.
              Ostrouchov and K. Joy and B. Hamann",
  title =     "VACET: Proposed SciDAC2 Visualization and
              Analytics Center for Enabling Technologies",
  journal =   "J. Phys.: Conf. Ser.",
  volume =    "46",
  pages =     "561--569",
  year =      "2006",
  keywords =  "VACET, SciDAC",
  url =       "http://www.sci.utah.edu/publications/bethel06/jpconf6_46_078.pdf",
}

@Article{SCI:Bet2007a,
  author =    "E.W. Bethel and C.R. Johnson and K. Joy and S.
              Ahern and V. Pascucci and H. Childs and J. Cohen
              and M. Duchaineau and B. Hamann and C.D. Hansen and
              D. Laney and P. Lindstrom and J. Meredith and G.
              Ostrouchov and S.G. Parker and C.T. Silva and A.R.
              Sanderson and X. Tricoche",
  title =     "SciDAC Visualization and Analytics Center for
              Enabling Technology",
  journal =   "Journal of Physics",
  volume =    "78",
  number =    "012032",
  pages =     "(published online)",
  year =      "2007",
  series =    "Conference Series",
  keywords =  "vacet",
  url =       "http://www.sci.utah.edu/publications/bethel07/VACET-Paper07-Final.pdf",
}

@Article{SCI:Bet2007b,
  author =    "E.W. Bethel and C.R. Johnson and C. Aragon and
              Prabhat and O. R{\"u}bel and G. Weber and V.
              Pascucci and H. Childs and P.-T. Bremer and B.
              Whitlock and S. Ahern and J. Meredith and G.
              Ostrouchov and K. Joy and B. Hamann and C. Garth
              and M. Cole and C.D. Hansen and S.G. Parker and
              A.R. Sanderson and C.T. Silva and X. Tricoche",
  title =     "DOE's SciDAC Visualization and Analytics Center
              for Enabling Technologies - Strategy for Petascale
              Visual Data Analysis Success",
  journal =   "CTWatch Quarterly",
  volume =    "3",
  number =    "4",
  year =      "2007",
}

@InCollection{SCI:Bet2008a,
  author =    "E.W. Bethel and H. Childs and A. Mascarenhas and
              V. Pascucci and Prabhat",
  title =     "Scientific Data Management Challenges in High
              Performance Visual Data Analysis",
  booktitle = "Scientific Data Management: Challenges, Existing
              Technology, and Deployment",
  year =      "2008",
  publisher = "Chapman Hall/CRC Press",
  keywords =  "vacet, data management",
}

@InProceedings{SCI:Bet2009a,
  author =    "E.W. Bethel and C.R. Johnson and S. Ahern and J.
              Bell and P.-T. Bremer and H. Childs and E.
              Cormier-Michel and M. Day and E. Deines and P.T.
              Fogal and C. Garth and C.G.R. Geddes and H. Hagen
              and B. Hamann and C.D. Hansen and J. Jacobsen and
              K.I. Joy and J. Krueger and J. Meredith and P.
              Messmer and G. Ostrouchov and V. Pascucci and K.
              Potter and Prabhat and D. Pugmire and O. Rubel and
              A.R. Sanderson and C.T. Silva and D. Ushizima and
              G.H. Weber and B. Whitlock and K. Wu",
  title =     "Occam's Razor and Petascale Visual Data
              Analysis",
  booktitle = "Proceedings of SciDAC 2009",
  volume =    "180",
  number =    "012084",
  pages =     "(published online)",
  year =      "2009",
  series =    "Journal of Physics: Conference Series",
  url =       "http://www.sci.utah.edu/publications/bethel09/Bethel_IOPScience2009.pdf",
}

@InProceedings{SCI:Bha2011a,
  author =    "H. Bhatia and S. Jadhav and P.-T. Bremer and G.
              Chen and J.A. Levine and L.G. Nonato and V.
              Pascucci",
  title =     "Edge Maps: Representing Flow with Bounded Error",
  booktitle = "Proceedings of IEEE Pacific Visualization
              Symposium 2011",
  pages =     "75--82",
  year =      "2011",
  month =     "March",
  location =  "Hong Kong, China",
  note =      "Won Best Paper Award!",
  doi =       "10.1109/PACIFICVIS.2011.5742375",
  url =       "http://www.sci.utah.edu/publications/bhatia11/Bhatia_vfmaps_pacvis11.pdf",
}

@InProceedings{SCI:Bha2011b,
  author =    "H. Bhatia and S. Jadhav and P.-T. Bremer and G.
              Chen and J.A. Levine and L.G. Nonato and V.
              Pascucci",
  title =     "Flow Visualization with Quantified Spatial and
              Temporal Errors using Edge Maps",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (TVCG)",
  volume =    "PP",
  number =    "99",
  pages =     "(in press)",
  year =      "2011",
  publisher = "IEEE Society",
  doi =       "10.1109/TVCG.2011.265",
  url =       "http://www.sci.utah.edu/publications/bhatia11/Bhatia_TVCG2011_EdgeMaps.pdf",
}

@TechReport{SCI:Big2006a,
  author =    "J. Bigler and A.J. Stephens and S.G. Parker",
  title =     "Design for Parallel Interactive Ray Tracing
              Systems",
  number =    "UUSCI-2006-027",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-027.pdf",
}

@InProceedings{SCI:Big2006b,
  author =    "J. Bigler and J. Guilkey and C. Gribble and C.D.
              Hansen and S.G. Parker",
  title =     "A Case Study: Visualizing Material Point Method
              Data",
  booktitle = "Proceedings of Euro Vis 2006",
  pages =     "299--306, 377",
  year =      "2006",
  month =     "May",
  keywords =  "mpm material point method, csafe c-safe",
  url =       "http://www.sci.utah.edu/publications/bigler06/mpmvis-electronic.pdf",
}

@InProceedings{SCI:Big2006c,
  author =    "J. Bigler and A.J. Stephens and S.G. Parker",
  title =     "Design for Parallel Interactive Ray Tracing
              Systems",
  booktitle = "Proceedings of The {IEEE} {S}ymposium on
              {I}nteractive {R}ay {T}racing",
  pages =     "187--196",
  year =      "2006",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/bigler06/manta-rt06.pdf",
}

@Misc{SCI:BioFEM,
  author =    "SCI Institute",
  year =      "2011",
  note =      "BioFEM: A SCIRun PowerApp that computes the
              electric field in a volume produced by a set of
              dipoles. Scientific Computing and Imaging Institute
              (SCI), Download from: http://www.scirun.org",
  keywords =  "biofem, ncrr",
}

@Misc{SCI:BioImg,
  author =    "CIBC",
  year =      "2011",
  note =      "BioImage: A SCIRun Power App for processing and
              visualizing medical image volumes. Scientific
              Computing and Imaging Institute (SCI), Download
              from: http://www.scirun.org",
  keywords =  "bioimage, ncrr",
}

@Misc{SCI:BioPSE,
  author =    "CIBC",
  year =      "2011",
  note =      "BioPSE: Problem Solving Environment for modeling,
              simulation, image processing, and visualization for
              biomedical computing applications. Scientific
              Computing and Imaging Institute (SCI), Download
              from: http://www.scirun.org",
  keywords =  "BioPSE, biopse, ncrr",
}

@Misc{SCI:BioTen,
  author =    "CIBC",
  year =      "2011",
  note =      "BioTensor: A SCIRun Power App for processing and
              visualizing diffusion tensor images. Scientific
              Computing and Imaging Institute (SCI), Download
              from: http://www.scirun.org",
  keywords =  "biotensor, ncrr",
}

@Article{SCI:Bla2010a,
  author =    "J.J.E. Blauer and J. Cates and C.J. McGann and
              E.G. Kholmovski and A. Alexander and M.W. Prastawa
              and S. Joshi and N.F. Marrouche and R.S. MacLeod",

  title =     "MRI Based Injury Characterization Immediately
              Following Ablation of Atrial Fibrillation",
  journal =   "Computing in Cardiology",
  number =    "37",
  pages =     "165--168",
  year =      "2010",
  issn =      "0276−6574",
  url =       "http://www.sci.utah.edu/publications/blauer10/Blauer_CinC2010.pdf",
}

@InProceedings{SCI:Boh2002a,
  author =    "P. Bohannon and J. Freire and J. Haritsa and M.
              Ramanath and P. Roy and J. Simeon",
  title =     "LegoDB: Customizing Relational Storage for XML
              Documents",
  booktitle = "Proceedings of the 28th international conference
              on Very Large Data Bases",
  pages =     "1091--1094",
  year =      "2002",
  location =  "Hong Kong, China",
  keywords =  "xml, relational storage, legodb",
  url =       "http://www.sci.utah.edu/publications/bohannon02/Bohannon_LegoDB2002.pdf",
}

@Article{SCI:Boh2002b,
  author =    "P. Bohannon and J. Freire and P. Roy and J.
              Sim{\'e}on",
  title =     "From XML Schema to Relations: A Cost-Based
              Approach to XML Storage",
  journal =   "International Conference on Data Engineering",
  pages =     "64",
  year =      "2002",
  publisher = "IEEE Computer Society",
  address =   "Los Alamitos, CA, USA",
  isbn =      "0-7695-1531-2",
  url =       "http://www.sci.utah.edu/publications/bohannon02/Bohannon_icde2002.pdf",
}

@Article{SCI:Boh2003a,
  author =    "P. Bohannon and J. Freire and J. Haritsa and M.
              Ramanath and P. Roy and J. Simeon",
  title =     "Bridging the XML-Relational Divide with LegoDB: A
              Demonstration",
  journal =   "International Conference on Data Engineering",
  pages =     "759",
  year =      "2003",
  issn =      "1063-6382",
  url =       "http://www.sci.utah.edu/publications/bohannon03/Bohannon_ICDE2003.pdf",
}

@Article{SCI:Bon2005a,
  author =    "C. Bonifasi-Lista and S.P. Lake and M. Small and
              J.A. Weiss",
  title =     "Viscoelastic Properties of the Human Medial
              Collateral Ligament Under Longitudinal, Transverse
              and Shear Loading",
  journal =   j-OR,
  volume =    "23",
  number =    "1",
  pages =     "67--76",
  year =      "2005",
  month =     "January",
  keywords =  "computational mechanics, computational
              biomechanics, angiogenesis",
  url =       "http://www.sci.utah.edu/publications/lista05/bonifasi_jor_2005.pdf",
}

@InProceedings{SCI:Bor2003a,
  author =    "R. Borgo and R. Scopigno and P. Cignoni and V.
              Pascucci",
  title =     "A Progressive Subdivision Paradigm ({PSP})",
  booktitle = "Proceedings of the Conference on Vision, Modeling
              and Visualization 2003 ({VMV}-03)",
  pages =     "441--450",
  year =      "2003",
  editor =    "T. Ertl and B. Girod and G. Greiner and H. Niemann
              and H.-P. Seidel and E. Steinbach and R.
              Westermann",
  publisher = "Aka GmbH",
  address =   "Berlin, Germany",
  month =     "Nov",
  note =      "UCRL-PROC-208557",
}

@InProceedings{SCI:Bor2004a,
  author =    "R. Borgo and V. Pascucci and R. Scopigno",
  title =     "Massive Data Pre-Processing with a Cluster Based
              Approach",
  booktitle = "Proceedings of the 2004 Eurographics Symposium on
              Parallel Graphics and Visualization
              ({EG}-{PGV}-04)",
  pages =     "67--74",
  year =      "2004",
  publisher = "Eurographics Association",
  address =   "Aire-la-Ville, Switzerland",
  month =     "June",
  note =      "UCRL-PROC-208678",
}

@TechReport{SCI:Bou2006a,
  author =    "S. Boulos and D. Edwards and J.D. Lacewell and
              J.M. Kniss and J. Kautz and P. Shirley and I.
              Wald",
  title =     "Interactive Distribution Ray Tracing",
  number =    "UUSCI-2006-022",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-022.pdf",
}

@TechReport{SCI:Bou2006b,
  author =    "S. Boulos and I. Wald and P. Shirley",
  title =     "Geometric and Arithmetic Culling Methods for
              Entire Ray Packets",
  number =    "UUCS-06-010",
  year =      "2006",
  institution = "School of Computing, University of Utah",
  type =      "School of Computing Technical Report",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/boulos06/UUCS-06-10.pdf",
}

@InProceedings{SCI:Bou2007a,
  author =    "S. Boulos and D. Edwards and J.D. Lacewell and J.
              Kniss and J. Kautz and I. Wald and P. Shirley",
  title =     "Packet-based Whitted and Distribution Ray
              Tracing",
  booktitle = "Proceedings of Graphics Interface 2007",
  volume =    "234",
  pages =     "177--184",
  year =      "2007",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/boulos07/packetdrt.pdf",
}

@InProceedings{SCI:Bow1998a,
  author =    "A.E. Bowden and R.D. Rabbitt and J.A. Weiss",
  title =     "Anatomical Registration and Segmentation by
              Warping Template Finite Element Models",
  booktitle = "Proc. {SPIE} (Laser-Tissue Interaction IX)",
  volume =    "3254",
  pages =     "469--476",
  year =      "1998",
  url =       "http://www.sci.utah.edu/publications/bowden98/spie98_anton.pdf",
}

@InProceedings{SCI:Bra2008a,
  author =    "D. Brayford and M. Turner and W.T. Hewitt",
  title =     "A Physical Model for the Polarized Scattering of
              Light",
  booktitle = "Proceedings of The sixth Theory and Practice of
              Computer Graphics 2008 Conference ({TPCG08})",
  year =      "2008",
  month =     "June",
  location =  "University of Manchester, UK",
  note =      "Best Paper Award",
  url =       "http://www.sci.utah.edu/publications/brayford08/eg_uk_DavidBrayford.pdf",
}

@InProceedings{SCI:Bre2000a,
  author =    "J.D. Brederson and M. Ikits and C.R. Johnson and
              C.D. Hansen and J.M. Hollerbach",
  title =     "The Visual Haptic Workbench",
  booktitle = "Proceedings of the Fifth PHANToM Users Group
              Workshop",
  pages =     "46--49",
  year =      "2000",
  month =     "October",
  keywords =  "vr virtual reality haptics, uve, scientific
              visualization, haptics",
  url =       "http://www.sci.utah.edu/publications/jdb00/pug00.pdf",
  url =       "http://www.sci.utah.edu/publications/jdb00/pug00.ps.gz",
  url =       "http://www.sci.utah.edu/publications/jdb00/pug00.ps",
}

@InProceedings{SCI:Bre2001a,
  author =    "J.D. Brederson and M. Ikits and C.R. Johnson and
              C.D. Hansen",
  title =     "A Prototype System For Synergistic Data Display",
  booktitle = "{IEEE} Virtual Reality 2001",
  year =      "2001",
  keywords =  "vector field methods, visual haptic workbench,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/jdb01/vr01-wk.ps",
  url =       "http://www.sci.utah.edu/publications/jdb01/vr01-wk.ps.gz",
  url =       "http://www.sci.utah.edu/publications/jdb01/vr01-wk.pdf",
}

@Article{SCI:Bre2001b,
  author =    "D. Breen and R.T. Whitaker",
  title =     "A Level-Set Approach for the Metamorphosis of
              Solid Models",
  journal =   j-TVCG,
  volume =    "7",
  number =    "2",
  pages =     "173--192",
  year =      "2001",
  keywords =  "ip image processing signal processing,
              segmentation, imaging, level-set methods,
              level-sets",
  url =       "http://www.sci.utah.edu/publications/breen01/breen_whitaker_2001.pdf",
}

@InProceedings{SCI:Bre2003a,
  author =    "P.-T. Bremer and H. Edelsbrunner and B. Hamann and
              V. Pascucci",
  title =     "A Multi-resolution Data Structure for
              Two-dimensional {Morse} Functions",
  booktitle = "Proceedings of IEEE Conference on Visualization
              ({VIS}-03)",
  pages =     "139--146",
  year =      "2003",
  month =     "October",
  note =      "UCRL-JC-154014",
}

@Article{SCI:Bre2004a,
  author =    "P.-T. Bremer and H. Edelsbrunner and B. Hamann and
              V. Pascucci",
  title =     "A Topological Hierarchy for Functions on
              Triangulated Surfaces",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "10",
  number =    "4",
  pages =     "385-396",
  year =      "2004",
  month =     "July/August",
  note =      "UCRL-JRNL-208700",
}

@InBook{SCI:Bre2004b,
  author =    "P.-T. Bremer and V. Pascucci and B. Hamann",
  title =     "Maximizing Adaptivity in Hierarchical Topological
              Models",
  volume =    "6",
  pages =     "121--130",
  year =      "2004",
  editor =    "T. Moeller and B. Hamann and B. Russell",
  chapter =   "Mathematical Foundations of Scientific
              Visualization, Computer Graphics,and Massive Data
              Exploration",
  series =    "Trends in Software",
  publisher = "Springer",
  month =     "January",
  note =      "UCRL-BOOK-200013",
}

@InProceedings{SCI:Bre2004c,
  author =    "P.-T. Bremer and V. Pascucci and B. Hamann",
  title =     "Maximizing adaptivity in hierarchical topological
              models",
  volume =    "6",
  pages =     "121--130",
  year =      "2004",
  editor =    "T. Moeller and B. Hamann and B. Russell",
  chapter =   "Mathematical Foundations of Scientific
              Visualization, Computer Graphics,and Massive Data
              Exploration",
  series =    "Trends in Software",
  publisher = "Springer",
  month =     "January",
  note =      "UCRL-BOOK-200013",
}

@InBook{SCI:Bre2006a,
  author =    "P.-T. Bremer and V. Pascucci",
  title =     "Topology-Based Methods In Visualization (2006)",
  number =    "1",
  year =      "2006",
  chapter =   "A Practical Approach to Two-dimensional Scalar
              Topology",
  publisher = "Springer Verlag",
  note =      "(In Press)",
}

@InProceedings{SCI:Bre2006b,
  author =    "P.-T. Bremer and W. Cabot and A. Cook and D. Laney
              and A. Mascarenhas and P. Miller and V. Pascucci",

  title =     "Understanding the Structure of the Turbulent
              Mixing Layer in Hydrodynamic Instabilities",
  booktitle = "Proceedings of SciDAC 2006 -- Scientific Discovery
              Through Advanced Computing",
  volume =    "46",
  pages =     "556--560",
  year =      "2006",
  publisher = "Journal of Physics Conference Series",
  month =     "June",
  location =  "Denver, CO, USA",
}

@InProceedings{SCI:Bre2007a,
  author =    "P.-T. Bremer and E.M. Bringa and M.A. Duchaineau
              and A. Gyulassy and D. Laney and A. Mascarenhas and
              V. Pascucci",
  title =     "Topological Feature Extraction and Tracking",
  booktitle = "Proceedings of SciDAC 2007 -- Scientific Discovery
              Through Advanced Computing",
  volume =    "78",
  pages =     "012032 (5pp)",
  year =      "2007",
  publisher = "Journal of Physics Conference Series",
  month =     "June",
  location =  "Boston, MA, USA",
}

@TechReport{SCI:Bre99,
  author =    "J.D. Brederson",
  title =     "The I3Stick: An Inexpensive, Immersive,
              Interaction Device",
  number =    "UUCS-99-014",
  year =      "1999",
  institution = "University of Utah",
  type =      "School of Computing Technical Report",
  month =     "November",
  keywords =  "vector field methods, vr virtual reality
              haptics",
  url =       "http://www.sci.utah.edu/publications/jdb99/UUCS-99-016.ps",
  url =       "http://www.sci.utah.edu/publications/jdb99/UUCS-99-016.ps.gz",
  url =       "http://www.sci.utah.edu/publications/jdb99/UUCS-99-016.pdf",
}

@Article{SCI:Bro1999a,
  author =    "D.H. Brooks and G.F. Ahmad and R.S. MacLeod and
              G.M. Maratos",
  title =     "Inverse Electrocardiography by Simultaneous
              Imposition of Multiple Constraints",
  journal =   j-BME,
  volume =    "46",
  number =    "1",
  pages =     "3--18",
  year =      "1999",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, cardiac heart,
              ncrr",
  url =       "http://www.sci.utah.edu/publications/brooks99/brooks-tmbe-1999.pdf",
}

@Misc{SCI:Bro2004a,
  author =    "S.R. Browd and L. McAninch and G.M. Jones and D.L.
              Brockmeyer",
  title =     "CT Image Segmentation and 3-D Reconstruction for
              Evaluation of Occipital-Cervical Instability in
              Children",
  year =      "2004",
  howpublished = "presented at AANS/CNS Section on Pediatric
              Neurological Surgery Annual Meeting, December 8-11,
              2004 San Francisco, CA.",
  keywords =  "ip image processing signal processing,
              segmentation, Occipital-Cervical Instability, CT,
              Down Syndrome",
  url =       "http://www.sci.utah.edu/publications/browd04/CTseg_abstract.txt",
}

@InProceedings{SCI:Bro2004b,
  author =    "D.H. Brooks and A. Ghodrati and Y. Zhang and G.
              Tadmor and R.S. MacLeod",
  title =     "Inverse Electrocardiography in the Framework of
              Dynamic Imaging Problems",
  booktitle = c-EMBS2004,
  pages =     "3565--3568",
  year =      "2004",
  month =     "September",
  location =  "San Francisco, CA",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions, cardiac heart",
  url =       "http://www.sci.utah.edu/publications/brooks04/EMBS04_DanaBrooks.pdf",
}

@Article{SCI:Bro2006a,
  author =    "S. Browd and L.J. Healy and G. Dobie and J.T.
              Johnson III and G.M. Jones and L.F. Rodriguez and
              D.L. Brockmeyer",
  title =     "Morphometric and Qualitative Analysis of
              Congenital Occipitocervical Instability in
              Children: Implications for Down Syndrome
              Patients",
  journal =   "Journal of Pediatric Neurosurgery",
  number =    "1 Suppl.",
  pages =     "50--54",
  year =      "2006",
}

@InProceedings{SCI:Bro2007a,
  author =    "D.H. Brooks and A. Keely and A. Ghodrati and G.
              Tadmor and R.S. MacLeod",
  title =     "Some Spatio-Temporal Approaches to Inverse
              Electrocardiography",
  booktitle = "Proc. Asilomar Conf. on Signals, Systems, and
              Computers",
  year =      "2007",
  month =     "November",
  location =  "Pacific Grove, CA",
  doi =       "10.1109/ACSSC.2007.4487316",
  keywords =  "inverse eeg, ncrr, cibc",
  url =       "http://www.sci.utah.edu/publications/brooks07/Brooks_SSC2007.pdf",
}

@Article{SCI:Bro2009a,
  author =    "J. Brouillat and C. Bouville and B. Loos and C.D.
              Hansen and K. Bouatouch",
  title =     "A Bayesian Monte Carlo Approach to Global
              Illumination",
  journal =   "Computer Graphics Forum Journal, Early View",
  volume =    "28",
  number =    "8",
  pages =     "2315--2329",
  year =      "2009",
  month =     "October",
  url =       "http://www.sci.utah.edu/publications/brouillat09/Brouillat_CGF2009.pdf",
}

@InProceedings{SCI:Bro2010a,
  author =    "C. Brownlee and V. Pegoraro and S. Shankar and P.
              McCormick and C.D. Hansen",
  title =     "Physically-Based Interactive Schlieren Flow
              Visualization",
  booktitle = "Proceedings of {IEEE} Pacific Visualization
              2010",
  year =      "2010",
  note =      "Won Best Paper Award!",
  url =       "http://www.sci.utah.edu/publications/brownlee10/Brownlee_PacVis2010.pdf",
}

@InProceedings{SCI:Bro2010b,
  author =    "C. Brownlee and V. Pegoraro and S. Shankar and
              P.S. McCormick and C.D. Hansen",
  title =     "Physically-Based Interactive Flow Visualization
              Based on Schlieren and Interferometry Experimental
              Techniques",
  year =      "2010",
  series =    "IEEE Transactions on Visualization and Computer
              Graphics",
  keywords =  "Scalar Field Data, GPUs and Multi-core
              Architectures, Flow Visualization",
  url =       "http://www.sci.utah.edu/publications/brownlee10/brownlee_tvcg10.pdf",
}

@InProceedings{SCI:Bro2010c,
  author =    "J.R. Bronson and J.A. Levine and R.T. Whitaker",
  title =     "Particle Systems for Adaptive, Isotropic Meshing
              of CAD Models",
  booktitle = "Proceedings of the 19th International Meshing
              Roundtable",
  number =    "5",
  pages =     "279-296",
  year =      "2010",
  month =     "October",
  location =  "Chattanooga, TN",
  note =      "Awarded Best Paper",
  doi =       "10.1007/978-3-642-15414-0_17",
  url =       "http://www.sci.utah.edu/publications/bronson10/Bronson_IMR2010.pdf",
}

@Article{SCI:Bro92a,
  author =    "K.W. Brodlie and M. Berzins and P.M. Dew and A.
              Poon and H. Wright",
  title =     "Visualization and its Use in Scientific
              Computation",
  journal =   "Programming Environments for High-Level Scientific
              Problem Solving",
  pages =     "293--303",
  year =      "1992",
  publisher = "Elsevier",
}

@InProceedings{SCI:Bue2008a,
  author =    "K. Buerger and P. Kondratieva and J. Krueger and
              R. Westermann",
  title =     "Importance-Driven Particle Techniques for Flow
              Visualization",
  booktitle = "Proceedings of {IEEE} {VGTC} PacificVis 2008",
  pages =     "(accepted)",
  year =      "2008",
  keywords =  "particle systems, flow visualization, vacet",
  url =       "http://www.sci.utah.edu/publications/buerger08/pvis08.pdf",
}

@Article{SCI:Bul2004a,
  author =    "E. Bullitt and M.G. Ewend and S. Aylward and W.
              Lin and G. Gerig and S. Joshi and I. Jung and K.
              Muller and J. Smith",
  title =     "Abnormal Vessel Tortuosity as a Marker of
              Treatment Response of Malignant Gliomas:
              Preliminary Report",
  journal =   "Technol Cancer Res Treat",
  volume =    "3",
  number =    "6",
  pages =     "577--584",
  year =      "2004",
  month =     "December",
  url =       "http://www.sci.utah.edu/publications/bullitt04/B_TCRT_3_6_577.pdf",
}

@Article{SCI:Bul2005a,
  author =    "E. Bullitt and D. Zeng and G. Gerig and S. Aylward
              and S. Joshi and J.K. Smith and W. Lin and M.
              Ewend",
  title =     "Vessel Tortuosity and Brain Tumor Malignancy: A
              Blinded Study",
  journal =   "Acad Radiol",
  volume =    "12",
  number =    "10",
  pages =     "1232--1240",
  year =      "2005",
  month =     "October",
}

@InProceedings{SCI:Bur2011a,
  author =    "B.M. Burton and J.D. Tate and B. Erem and D.J.
              Swenson and D.F. Wang and D.H. Brooks and P.M. van
              Dam and R.S. MacLeod",
  title =     "Forward/Inverse toolkit in the SCIRun problem
              solving environment",
  booktitle = "Proceedings of the 2011 IEEE Int. Conf.
              Engineering and Biology Society (EMBC)",
  pages =     "(accepted)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/burton11/Burton_2011BMB_EMBC.pdf",
}

@InProceedings{SCI:But2001a,
  author =    "C.R. Butson",
  title =     "From Action Potentials to Surface Potentials",
  booktitle = "Multilevel Neuronal Modeling Workshop",
  year =      "2001",
  month =     "May",
  location =  "Edinburgh, Scotland",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              forward simulation, scalar field methods, bipolar
              stimulation, neuron potential simulation, ncrr",
}

@InProceedings{SCI:But2001b,
  author =    "C.R. Butson and G.A. Clark",
  title =     "Random Noise Confers a Paradoxical Improvement in
              the Ability of a Simulated Hermissenda
              Photoreceptor Network to Encode Light Intensity",
  booktitle = "Society for Neuroscience Conference",
  year =      "2001",
  month =     "November",
  keywords =  "bipolar stimulation, neuron potential
              simulation",
}

@InProceedings{SCI:But2007a,
  author =    "L. Butler and A.J. Stephens",
  title =     "Bullet Ray Vision",
  booktitle = "Proceedings of the IEEE Symposium on Interactive
              Ray Tracing",
  pages =     "(accepted)",
  year =      "2007",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/butler07/BulletRayVision.pdf",
}

@TechReport{SCI:Cal2004a,
  author =    "S.P. Callahan and M. Ikits and J.L.D. Comba and
              C.T. Silva",
  title =     "Hardware-Assisted Visibility Sorting for
              Unstructured Volume Rendering",
  number =    "UUSCI-2004-003",
  year =      "2004",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2004-003.pdf",
}

@Article{SCI:Cal2005a,
  author =    "S.P. Callahan and M. Ikits and J.L.D. Comba and
              C.T. Silva",
  title =     "Hardware-Assisted Visibility Ordering for
              Unstructured Volume Rendering",
  journal =   j-TVCG,
  volume =    "11",
  number =    "3",
  pages =     "285--295",
  year =      "2005",
  publisher = "IEEE Educational Activities Department",
  issn =      "1077-2626",
  keywords =  "scalar field methods, volume rendering, visibility
              ordering, GPU, tetrahedral meshes, unstructured
              volume rendering",
  url =       "http://www.sci.utah.edu/publications/stevec05/HAVS.pdf",
}

@InProceedings{SCI:Cal2005b,
  author =    "F. Calderero and A. Ghodrati and D.H. Brooks and
              G. Tadmor and R.S. MacLeod",
  title =     "A Method to Reconstruct Activation Wavefronts
              Without Isotropy Assumptions Using a Level Sets
              Approach",
  booktitle = "Functional Imaging and Modeling of the Heart:
              Third International Workshop (FIMH 2005)",
  pages =     "195",
  year =      "2005",
  location =  "Barcelona, June 2-4",
  keywords =  "ncrr",
}

@InProceedings{SCI:Cal2005c,
  author =    "S.P. Callahan and J.L.D. Comba and P. Shirley and
              C.T. Silva",
  title =     "Interactive Rendering of Large Unstructured Grids
              Using Dynamic Level-of-Detail",
  booktitle = c-VIS2005,
  pages =     "26",
  year =      "2005",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, interactive volume rendering, multiresolution
              meshes, level-of-detail, tetrahedral meshes",
  url =       "http://www.sci.utah.edu/publications/stevec05/dynamic_lod.pdf",
}

@MastersThesis{SCI:Cal2005d,
  author =    "S.P. Callahan",
  title =     "The k-Buffer and its Applications to Volume
              Rendering",
  year =      "2005",
  school =    "School of Computing, University of Utah",
  note =      "Masters Thesis",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/stevec05/thesis.pdf",
}

@InProceedings{SCI:Cal2006a,
  author =    "S.P. Callahan and J. Freire and E. Santos and C.E.
              Scheidegger and C.T. Silva and H.T. Vo",
  title =     "Managing the Evolution of Dataflows with
              VisTrails",
  booktitle = "Proceedings of The 2006 IEEE Workshop on Workflow
              and Data Flow for Scientific Applications (SciFlow
              2006)",
  year =      "2006",
  keywords =  "vistrails,",
  url =       "http://www.sci.utah.edu/publications/stevec06/sciflow2006.pdf",
}

@InProceedings{SCI:Cal2006b,
  author =    "S.P. Callahan and J. Freire and E. Santos and C.
              Scheidegger and C.T. Silva and H.T. Vo",
  title =     "VisTrails: Visualization Meets Data Management",
  booktitle = "Proceedings of the 2006 ACM SIGMOD/PODS
              Conference",
  pages =     "745--747",
  year =      "2006",
  keywords =  "vistrails, provenance, workflow management",
  url =       "http://www.sci.utah.edu/publications/stevec06/vt-sigmod.pdf",
}

@TechReport{SCI:Cal2006c,
  author =    "S.P. Callahan and J. Freire and E. Santos and C.E.
              Scheidegger and C.T. Silva and H.T. Vo",
  title =     "Using Provenance to Streamline Data Exploration
              through Visualization",
  number =    "UUSCI-2006-016",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "VisTrails",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-016.pdf",
}

@TechReport{SCI:Cal2006d,
  author =    "S.P. Callahan and L. Bavoil and V. Pascucci and
              C.T. Silva",
  title =     "Progressive Volume Rendering of Large Unstructured
              Grids",
  number =    "UUSCI-2006-019",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "volume rendering, rtrt real-time ray tracing,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-019.pdf",
}

@InProceedings{SCI:Cal2006e,
  author =    "S.P. Callahan and L. Bavoil and V. Pascucci and
              C.T. Silva",
  title =     "Progressive Volume Rendering of Large Unstructured
              Grids",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (Proceedings of Visualization/Information
              Visualization 2006)",
  volume =    "12",
  number =    "5",
  pages =     "(to appear)",
  year =      "2006",
  note =      "Updated version of UUSCI-2006-019.",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/stevec06/pro-havs.pdf",
}

@TechReport{SCI:Cal2007a,
  author =    "M. Callahan and M.J. Cole and J.F. Shepherd and
              J.G. Stinstra and C.R. Johnson",
  title =     "BioMesh3D: A Meshing Pipeline for Biomedical
              Models",
  number =    "UUSCI-2007-009",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ncrr, biomesh3d",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-009.pdf",
}

@Article{SCI:Cal2007b,
  author =    "M. Callahan and M.J. Cole and J.F. Shepherd and
              J.G. Stinstra and C.R. Johnson",
  title =     "A Meshing Pipeline for Biomedical Computing",
  journal =   "Engineering with Computers",
  pages =     "(in press)",
  year =      "2007",
  series =    "Special Issue on Computational Bioengineering",
  url =       "http://www.sci.utah.edu/publications/callahan07/Meshing-Pipeline07.pdf",
}

@Article{SCI:Cal2007c,
  author =    "S.P. Callahan and L. Bavoil and V. Pascucci and
              C.T. Silva",
  title =     "Progressive Volume Rendering of Large Unstructured
              Grids",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "13",
  number =    "1",
  pages =     "1307-1314",
  year =      "2007",
}

@Article{SCI:Cal2008a,
  author =    "S.P. Callahan and J.H. Callahan and C.E.
              Scheidegger and C.T. Silva",
  title =     "Direct Volume Rendering: A 3D Plotting Technique
              for Scientific Data",
  journal =   "Computing in Science and Engineering",
  volume =    "10",
  number =    "1",
  pages =     "88--92",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/callahan08/cise08.pdf",
}

@TechReport{SCI:Cal2008b,
  author =    "S.P. Callahan",
  title =     "Adaptive Visualization of Dynamic Unstructured
              Meshes",
  number =    "UUSCI-2008-003",
  year =      "2008",
  institution = "University of Utah School of Computing",
  type =      "SCI Technical Report",
  note =      "Ph.D. Thesis",
  keywords =  "meshing, ph.d. thesis",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2008-003.pdf",
}

@TechReport{SCI:Cal2008c,
  author =    "S.P. Callahan and C.T. Silva",
  title =     "Image-Space Acceleration for Direct Volume
              Rendering of Unstructured Grids using Joint
              Bilateral Upsampling",
  number =    "UUSCI-2008-002",
  year =      "2008",
  institution = "University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2008-002.pdf",
}

@InProceedings{SCI:Cal2008d,
  author =    "S.P. Callahan and J. Freire and C.E. Scheidegger
              and C.T. Silva and and H.T. Vo",
  title =     "Towards a Provenance-Enabling ParaView",
  booktitle = "Proceedings of the Second International Provenance
              and Annotation Workshop ({IPAW} 2008)",
  pages =     "120--127",
  year =      "2008",
  keywords =  "vistrails, provenance, workflow management",
  url =       "http://www.sci.utah.edu/publications/callahan08/ipaw08.pdf",
}

@Article{SCI:Cal2009a,
  author =    "M. Callahan and M.J. Cole and J.F. Shepherd and
              J.G. Stinstra and C.R. Johnson",
  title =     "A Meshing Pipeline for Biomedical Models",
  journal =   "Engineering with Computers",
  volume =    "25",
  number =    "1",
  pages =     "115-130",
  year =      "2009",
  publisher = "SpringerLink",
  doi =       "10.1007/s00366-008-0106-1",
  url =       "http://www.sci.utah.edu/publications/callahan09/scirun_meshing.pdf",
}

@Article{SCI:Can2011a,
  author =    "C.D. Cantwell and S.J. Sherwin and R.M. Kirby and
              P.H.J. Kelly",
  title =     "From h to p Efficiently: Strategy Selection for
              Operator Evaluation on Hexahedral and Tetrahedral
              Elements",
  journal =   "Computers and Fluids",
  volume =    "43",
  number =    "1",
  pages =     "23--28",
  year =      "2011",
  doi =       "10.1016/j.compfluid.2010.08.012",
  url =       "http://www.sci.utah.edu/publications/cantwell11/Cantwell_CF2011.pdf",
}

@Article{SCI:Can2011b,
  author =    "C.D. Cantwell and S.J. Sherwin and R.M. Kirby and
              P.H.J. Kelly",
  title =     "From h to p Efficiently: Selecting the Optimal
              Spectral/hp Discretisation in Three Dimensions",
  journal =   "Mathematical Modelling of Natural Phenomena",
  volume =    "6",
  number =    "3",
  pages =     "84--96",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/cantwell11/Cantwell_MMNP2011.pdf",
}

@TechReport{SCI:Car2006a,
  author =    "C.D. Carbonera and J.F. Shepherd",
  title =     "On the Existence of a Perfect Matching for
              4-regular Graphs derived from Quadrilateral
              Meshes",
  number =    "UUSCI-2006-021",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-021.pdf",
}

@InProceedings{SCI:Car2006b,
  author =    "C.D. Carbonera and J.F. Shepherd",
  title =     "A Constructive Approach to Constrained Hexahedral
              Mesh Generation",
  booktitle = "Proceedings of the 15th International Meshing
              Roundtable",
  year =      "2006",
  month =     "September",
  location =  "Birmingham, AL",
  keywords =  ", meshing, open problem 27",
  url =       "http://www.sci.utah.edu/publications/carbonera06/carbonera.pdf",
}

@Article{SCI:Cas2006a,
  author =    "C.J. Cascio and M. Styner and R.G. Smith and M.D.
              Poe and G. Gerig and H.C. Hazlett and M. Jomier and
              R. Bammer and J. Piven",
  title =     "Tractography-Based Segmentation of the Corpus
              Callosum Reveals a Reduced Relationship to Cortical
              White Matter Volume in Young Children with
              Developmental Delay",
  journal =   "Am J Psychiatry",
  volume =    "163",
  pages =     "2157--2163",
  year =      "2006",
  month =     "December",
}

@Article{SCI:Cas2007a,
  author =    "C.J. Cascio and G. Gerig and J. Piven",
  title =     "Diffusion Tensor Imaging: Application to the Study
              of the Developing Brain",
  journal =   "Journal of the American Academy of Child and
              Adolescent Psychiatry JAACAP",
  year =      "2006",
  month =     "August",
}

@Article{SCI:Cas2007b,
  author =    "C.J. Cascio and G. Gerig and J. Piven",
  title =     "Diffusion Tensor Imaging: Application to the Study
              of the Developing Brain",
  journal =   "J Am Acad Child Adolesc Psychiatry",
  volume =    "46",
  number =    "2",
  pages =     "213--223",
  year =      "2007",
  month =     "February",
  keywords =  "ucnia",
}

@InProceedings{SCI:Cat2003a,
  author =    "J. Cates and R.T. Whitaker",
  title =     "Interactive Medical Image Segmentation Using the
              Insight Toolkit",
  booktitle = c-RSNA2003,
  year =      "2003",
  month =     "November",
  keywords =  "ip image processing signal processing,
              segmentation, insight itk",
}

@TechReport{SCI:Cat2004a,
  author =    "J. Cates and A. Lefohn and R.T. Whitaker",
  title =     "GIST: an Interactive, GPU-Based Level Set
              Segmentation Tool for 3D Medical Images",
  number =    "UUCS-04-007",
  year =      "2004",
  institution = "University of Utah School of Computing",
  keywords =  "ip image processing signal processing,
              segmentation",
  url =       "http://www.sci.utah.edu/publications/cates04/Cates_MedIA2004Tech.pdf",
}

@TechReport{SCI:Cat2004b,
  author =    "J. Cates and R.T. Whitaker and G.M. Jones",
  title =     "Case Study: An Evaluation of User-Assisted
              Hierarchical Watershed Segmentation",
  number =    "UUCS-04-006",
  year =      "2004",
  institution = "University of Utah School of Computing",
  keywords =  "ip image processing signal processing,
              segmentation, watershed, ncrr",
  url =       "http://www.sci.utah.edu/publications/cates04/UUCS-04-006.pdf",
}

@Article{SCI:Cat2004c,
  author =    "J. Cates and A. Lefohn and R.T. Whitaker",
  title =     "GIST: An Interactive, GPU-Based Level Set
              Segmentation Tool for 3D Medical Images",
  journal =   "Medical Image Analysis",
  volume =    "8",
  number =    "3",
  pages =     "217--231",
  year =      "2004",
  month =     "September",
  keywords =  "ip image processing signal processing,
              segmentation, ncrr",
}

@InProceedings{SCI:Cat2006a,
  author =    "J. Cates and M.D. Meyer and P.T. Fletcher and R.T.
              Witaker",
  title =     "Entropy-Based Particle Systems for Shape
              Correspondence",
  booktitle = "Workshop on Mathematical Foundations of
              Computational Anatomy, MICCAI 2006",
  pages =     "90--99",
  year =      "2006",
  month =     "October",
  keywords =  "particle systems, , particle systems",
  url =       "http://www.sci.utah.edu/publications/cates06/Cates-miccai2006.pdf",
}

@InProceedings{SCI:Cat2006b,
  author =    "J. Cates and D. Weinsten and M. Davis",
  title =     "The Center for Integrative Biomedical Computing:
              Advancing Biomedical Science with Open Source",
  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging (ISBI) 2006",
  year =      "2006",
  keywords =  "ncrr, open source software, biomedical",
  url =       "http://www.sci.utah.edu/publications/cates06/Cates-isbi2006.pdf",
}

@InProceedings{SCI:Cat2007a,
  author =    "J. Cates and P.T. Fletcher and M. Styner and M.
              Shenton and R.T. Whitaker",
  title =     "Shape Modeling and Analysis with Entropy-Based
              Particle Systems",
  booktitle = "Proceedings of Information Processing in Medical
              Imaging (IPMI) 2007",
  pages =     "333--345",
  year =      "2007",
  series =    "LNCS 4584",
  url =       "http://www.sci.utah.edu/publications/cates07/Cates-IPMI2007.pdf",
}

@InProceedings{SCI:Cat2008a,
  author =    "J. Cates and P.T. Fletcher and Z. Warnock and R.T.
              Whitaker",
  title =     "A Shape Analysis Framework for Small Animal
              Phenotyping with Application to Mice with a
              Targeted Disruption of Hoxd11",
  booktitle = "Proceedings of the 5th IEEE International
              Symposium on Biomedical Imaging (ISBI '08)",
  pages =     "512--516",
  year =      "2008",
  doi =       "10.1109/ISBI.2008.4541045",
  keywords =  "phenotyping, genetic mutation analysis",
  url =       "http://www.sci.utah.edu/publications/cates98/Cates_ISBI08.pdf",
}

@InProceedings{SCI:Cat2008b,
  author =    "J. Cates and P.T. Fletcher and M. Styner and H.
              Hazlett and R.T. Whitaker",
  title =     "Particle-Based Shape Analysis of Multi-Object
              Complexes",
  booktitle = "Proceedings of the 11th International Conference
              on Medical Image Computing and Computer Assisted
              Intervention (MICCAI '08)",
  pages =     "477--485",
  year =      "2008",
  series =    "Lecture Notes In Computer Science (LCNS)",
  isbn =      "978-3-540-85987-1",
  url =       "http://www.sci.utah.edu/publications/cates08/CatesMICCAI08.pdf",
}

@InProceedings{SCI:Cha2004a,
  author =    "E. Chaney and S. Pizer and S. Joshi and R.
              Broadhurst and P.T. Fletcher and G. Gash and Q. Han
              and J.Y. Jeong and C. Lu and D. Merck and J. Stough
              and G. Tracton and M.D.J. Bechtel and J. Rosenman
              and Y.Y. Chi and K. Muller",
  title =     "Automatic Male Pelvis Segmentation from CT Images
              via Statistically Trained Multi-Object Deformable
              M-rep Models",
  booktitle = "Presented at American Society for Therapeutic
              Radiology and Oncology (ASTRO)",
  year =      "2004",
  url =       "http://www.sci.utah.edu/publications/chaney04/ASTRO04_Chaney.pdf",
}

@Article{SCI:Che2002a,
  author =    "Z. Chen and S. Pizer and E. Chaney and S. Joshi",
  title =     "Medical Image Synthesis via Monte Carlo
              Simulation",
  journal =   "Medical Image Computing and Computer-Assisted
              Intervention (MICCAI)",
  pages =     "347--354",
  year =      "2002",
  editor =    "T Dohi and R Kikinis",
  url =       "http://www.sci.utah.edu/publications/chen02/MICCAI02-chenzj.pdf",
}

@Article{SCI:Che2004a,
  author =    "A.B. Cheryauka and J.N. Lee and A.A. Samsonov and
              M. Defrise and G.T. Gullberg",
  title =     "{MRI} Diffusion Tensor Reconstruction with
              {PROPELLER} Data Acquisition",
  journal =   j-JMRI,
  volume =    "22",
  number =    "2",
  pages =     "139--148",
  year =      "2004",
  keywords =  "tensor field methods, diffusion tensor imaging, ip
              image processing signal processing, bisti,
              PROPELLER, Imaging, propeller, imaging, ncrr",
  url =       "http://www.sci.utah.edu/publications/cheryauka04/propeller.pdf",
}

@InProceedings{SCI:Che2011a,
  author =    "G. Chen and V. Kwatra and L.-Y. Wei and C.D.
              Hansen and E. Zhang",
  title =     "Design of 2D Time-Varying Vector Fields",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics TVCG",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/chen11/Chen_TVCG2011.pdf",
}

@InProceedings{SCI:Che2011b,
  author =    "G. Chen and D. Palke and Z. Lin and H. Yeh and P.
              Vincent and R.S. Laramee and E. Zhang",
  title =     "Asymmetric Tensor Field Visualization for
              Surfaces",
  booktitle = "IEEE TVCG (Proceeding of IEEE Visualization
              2011)",
  volume =    "17",
  number =    "12",
  pages =     "1979-1988",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/chen11/Chen_HybridTensorVis_Vis2011.pdf",
  url =       "http://www.sci.utah.edu/publications/chen11/Chen_HybridTensorVis_Vis2011.mov",
}

@Article{SCI:Che2011c,
  author =    "Guoning Chen and Qingqing Deng and Andrzej
              Szymczak and Robert S. Laramee and and Eugene
              Zhang",
  title =     "Morse Set Classification and Hierarchical
              Refinement using Conley Index",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics (TVCG)",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/chen11/Chen_fastMorseDecomp2011.pdf",
}

@Article{SCI:Chi2007a,
  author =    "D. Chisnall and M. Chen and C.D. Hansen",
  title =     "Ray-Driven Dynamic Working Set Rendering for
              Complex Volume Scene Graphs Involving Large Point
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  journal =   "The Visual Computer",
  volume =    "23",
  number =    "3",
  pages =     "167--179",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/chisnall07/Chisnall_VisualComputer2007.pdf",
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@Article{SCI:Chi99a,
  author =    "T.H.C. Childs and M. Berzins and G.R. Ryder and A.
              Towtoni",
  title =     "Selective Laser Sintering of an Amorphous
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  journal =   "Proceedings of the Institution of Mechanical
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  year =      "1999",
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@Article{SCI:Cho2008a,
  author =    "A.N.M. Imroz Choudhury and K. Potter and S.G.
              Parker",
  title =     "Interactive Visualization for Memory Reference
              Traces",
  booktitle = "Proceedings of EuroVis 2008",
  journal =   "Computer Graphics Forum",
  volume =    "27",
  number =    "3",
  pages =     "815--822",
  year =      "2008",
  month =     "May",
  url =       "http://www.sci.utah.edu/publications/choudhury08/reftrace-vis.eurovis08.pdf",
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@InProceedings{SCI:Cho2009a,
  author =    "A.N.M. Imroz Choudhury and S.G. Parker",
  title =     "Ray Tracing NPR-Style Feature Lines",
  booktitle = "Proceedings of the 7th International Symposium on
              Non-Photorealistic Animation and Rendering ({NPAR})
              2009",
  pages =     "5--14",
  year =      "2009",
  keywords =  "ray-tracing",
  url =       "http://www.sci.utah.edu/publications/choudhury09/NPR-lines.NPAR09.pdf",
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@Article{SCI:Cho2010a,
  author =    "A.N.M. Imroz Choudhury and M.D. Steffen and J.E.
              Guilkey and S.G. Parker",
  title =     "Enhanced Understanding of Particle Simulations
              Through Deformation-Based Visualization",
  journal =   "Computer Modeling in Engineering & Sciences",
  volume =    "63",
  number =    "2",
  pages =     "117--136",
  year =      "2010",
  keywords =  "csafe",
  url =       "http://www.sci.utah.edu/publications/choudhury10/Choudhury_particle-deformation.CMES2010.pdf",
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@InProceedings{SCI:Cho2011a,
  author =    "A.N.M. Imroz Choudhury and P. Rosen",
  title =     "Abstract Visualization of Runtime Memory
              Behavior",
  booktitle = "6th IEEE International Workshop on Visualizing
              Software for Understanding and Analysis (VISSOFT
              2011)",
  pages =     "22--29",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/choudhury11/Choudhury.2011.VisSoft.pdf",
}

@InProceedings{SCI:Cho2012a,
  author =    "A.N.M. Imroz Choudhury and B. Wang and P. Rosen
              and V. Pascucci",
  title =     "Topological Analysis and Visualization of Cyclical
              Behavior in Memory Reference Traces",
  booktitle = "Proceedings of Pacific Vis 2012",
  pages =     "(to appear)",
  year =      "2012",
  keywords =  "scidac",
  url =       "http://www.sci.utah.edu/publications/choudhury12/Choudhury_PacVis2012.pdf",
}

@Article{SCI:Chr1995a,
  author =    "G.E. Christensen and R.D. Rabbitt and M.I. Miller
              and S.C. Joshi and U. Grenander and T.A. Coogan",
  title =     "Topological Properties of Smooth Anatomic Maps",
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@Article{SCI:Chr1997a,
  author =    "G.E. Christensen and S.C. Joshi and M. Miller",
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  volume =    "16",
  number =    "6",
  pages =     "864--877",
  year =      "1997",
  month =     "December",
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@Article{SCI:Chr1997b,
  author =    "G.E. Christensen and S.C. Joshi and M.I. Miller",
  title =     "Volumetric Transformation of Brain Anatomy",
  journal =   "IEEE Transactions on Medical Imaging",
  volume =    "16",
  number =    "6",
  pages =     "864--877",
  year =      "1997",
  month =     "December",
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@Misc{SCI:CIBCData,
  author =    "CIBC",
  year =      "2011",
  note =      "Data Sets: NCRR Center for Integrative Biomedical
              Computing (CIBC) data set archive. Download from:
              http://www.sci.utah.edu/cibc/software.html",
  keywords =  "datasets, ncrr",
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@Article{SCI:Coh2003a,
  author =    "D. Cohen-Or and Y.L. Chrysanthou and C.T. Silva
              and F. Durand",
  title =     "A Survey of Visibility for Walkthrough
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  journal =   "IEEE Transactions on Visualization and Computer
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  volume =    "9",
  number =    "3",
  pages =     "412--431",
  year =      "2003",
  publisher = "IEEE Computer Society",
  address =   "Los Alamitos, CA, USA",
  issn =      "1077-2626",
  url =       "http://www.sci.utah.edu/publications/cohen-or03/tvcg2003bcr.pdf",
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@InProceedings{SCI:Col2003a,
  author =    "M. Cole and S.G. Parker",
  title =     "Dynamic Compilation of C++ Template Code",
  booktitle = "Scientific Programming",
  volume =    "11",
  pages =     "321--327",
  year =      "2003",
  publisher = "IOS Press",
  keywords =  "ncrr, scirun, problem solving environments",
  url =       "http://www.sci.utah.edu/publications/mcole01/dyn.pdf",
}

@InProceedings{SCI:Col2003b,
  author =    "K. Cole-McLaughlin and H. Edelsbrunner and J.
              Harer and V. Natarajan and V. Pascucci",
  title =     "Loops in Reeb Graphs of 2-Manifolds",
  booktitle = "Proceedings of the 19th ACM Symposium on
              Computational Geometry",
  pages =     "344--350",
  year =      "2003",
  month =     "June",
  note =      "UCRL-JC-151933",
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@InProceedings{SCI:Col2003c,
  author =    "K. Cole-McLaughlin and H. Edelsbrunner and J.
              Harer and V. Natarajan and V. Pascucci",
  title =     "Loops in Reeb Graphs of 2-Manifolds",
  booktitle = "Proceedings of the 19th ACM Symposium on
              Computational Geometry",
  pages =     "344--350",
  year =      "2003",
  month =     "June",
  note =      "UCRL-JC-151933",
}

@InProceedings{SCI:Col2004a,
  author =    "M. Cole and F.B. Sachse and D.M. Weinstein and
              S.G. Parker and R.M. Kirby",
  title =     "A Software Framework for Solving Problems of
              Bioelectricity Applying High-Order Finite
              Elements",
  booktitle = c-EMBS2004,
  volume =    "1",
  pages =     "821--824",
  year =      "2004",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              biopse",
  url =       "http://www.sci.utah.edu/publications/mjc04/Article3.pdf",
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@InProceedings{SCI:Col2004b,
  author =    "K. Cole-McLaughlin and V. Pascucci",
  title =     "Multiresolution Representation of Topology",
  booktitle = "Proceedings of the 4th {IASTED} International
              Conference on Visualization, Imaging, And Image
              Processing (VIIP 2004)",
  volume =    "2004",
  pages =     "282--289",
  year =      "2004",
  month =     "September",
  location =  "Marbella, Spain",
  note =      "UCRL-PROC-208680",
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@TechReport{SCI:Com2004a,
  author =    "J.L.D. Comba and J.S.B. Mitchell and C.T. Silva",
  title =     "On the Convexification of Unstructured Grids From
              A Scientific Visualization Perspective",
  number =    "UUSCI-2004-004",
  year =      "2004",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "unstructured grids, convexification, Delaunay
              triangulations, binary space, partitioning trees,
              delaunay triangulations",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2004-004.pdf",
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@InProceedings{SCI:Coo1996a,
  author =    "M.L. Cooper and A.D. Lanterman and S.C. Joshi and
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  title =     "Representing The Variation of Thermodynamic State
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@Article{SCI:Cor2001a,
  author =    "N.M. Cordaro and J.A. Weiss and J.A. Szivek",
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              and Cortical Bone During Bending",
  journal =   "Journal of Biomedical Materials Research",
  volume =    "58",
  number =    "2",
  pages =     "147--155",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/cordaro01/jbmr_final.pdf",
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@Article{SCI:Cor2003a,
  author =    "A. Corlan and R.S. MacLeod and L.D. Ambroggi",
  title =     "Low Variability of Autocorrelation Maps with
              Intrathoracic Heart Position",
  journal =   j-IJBEM,
  volume =    "5",
  number =    "1",
  pages =     "139--140",
  year =      "2003",
  keywords =  "cardiac heart, ncrr",
  url =       "http://www.sci.utah.edu/publications/corlan03/ICE03-Corlan.pdf",
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@InProceedings{SCI:Cor2003b,
  author =    "W. Correa and J. Klosowski and C.T. Silva",
  title =     "Visibility-Based Prefetching for Interactive
              Out-Of-Core Rendering",
  booktitle = "Proceedings of the 2003 IEEE Symposium on Parallel
              and Large-Data Visualization and Graphics",
  pages =     "2",
  year =      "2003",
  isbn =      "0-7695-2091-X",
  url =       "http://www.sci.utah.edu/publications/correa03/pvg2003.pdf",
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@Article{SCI:Cor2003c,
  author =    "W. Correa and J. Klosowski and C.T. Silva",
  title =     "Out-Of-Core Sort-First Parallel Rendering for
              Cluster-Based Tiled Displays",
  journal =   "Parallel Computing",
  volume =    "29",
  number =    "3",
  pages =     "325--338",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/correa03/pc2003cr.pdf",
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@InProceedings{SCI:Cor2005a,
  author =    "I. Corouge and P.T. Fletcher and S. Joshi and J.H.
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  title =     "Fiber Tract-Oriented Statistics for Quantitative
              Diffusion Tensor MRI Analysis",
  booktitle = "Med Image Comput Comput Assist Interv Int Conf Med
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  volume =    "8 (Pt. 1)",
  pages =     "131--139",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/corouge05/MICCAI05_Corouge_DT.pdf",
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@Article{SCI:Cor2006a,
  author =    "I. Corouge and P.T. Fletcher and S. Joshi and S.
              Gouttard and G. Gerig",
  title =     "Fiber Tract-Oriented Statistics for Quantitative
              Diffusion Tensor MRI Analysis",
  journal =   "Medical Image Analysis",
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  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/corouge06/Corouge_MedIA2006a.pdf",
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@Article{SCI:Cre97a,
  author =    "D.J. Creasey and D.E. Heard and M. Pilling and
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  title =     "Visualisation of a Supersonic Free-Jet Expansion
              Using Laser-Induced Fluorescence Spectroscopy:
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              Ultralow Temperatures",
  journal =   "Applied Physics B: Lasers and Optics",
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@InProceedings{SCI:Cse1998a,
  author =    "J.C. Csernansky and S. Joshi and L. Wang and M.
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  title =     "Hippocampal Morphometry in Schizophrenia by High
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  booktitle = "Proceedings of the National Academy of Science",
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  year =      "1998",
  month =     "September",
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@Article{SCI:Cse2000a,
  author =    "J.G. Csernansky and L. Wang and S. Joshi and J.P.
              Miller and M. Gado and D. Kido and D. McKeel and
              J.C. Morris and M. Miller",
  title =     "Early DAT is Distinguished from Aging by
              High-Dimensional Mapping of the Hippocampus.
              Dementia of the Alzheimer Type",
  journal =   "Neurology",
  volume =    "55",
  number =    "11",
  pages =     "1636--1643",
  year =      "2000",
  month =     "December 12",
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@Article{SCI:Cse2004a,
  author =    "J.G. Csernansky and L. Wang and S.C. Joshi and
              J.T. Ratnanather and M. Miller",
  title =     "Computational Anatomy and Neuropsychiatric
              Disease: Probabilistic Assessment of Variation and
              Statistical Inference of Group Difference,
              Hemispheric Asymmetry, and Time-Dependent Change",

  journal =   "Neuroimage",
  volume =    "23 Suppl. 1",
  pages =     "S56--S68",
  year =      "2004",
}

@InProceedings{SCI:Cua2011a,
  author =    "A. Cuadros-Vargas and L.G. Nonato and V.
              Pascucci",
  title =     "Combinatorial Laplacian Image Cloning",
  booktitle = "Proceedings of XXIV Sibgrapi – Conference on
              Graphics, Patterns and Images",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/vargas11/paper-86877.pdf",
}

@InProceedings{SCI:Cui2010a,
  author =    "J. Cui and P. Rosen and V. Popescu and C.
              Hoffmann",
  title =     "A Curved Ray Camera for Handling Occlusions
              through Continuous Multiperspective
              Visualization",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (Visualization 2010)",
  pages =     "1235--1242",
  year =      "2010",
  month =     "November/December",
  url =       "http://www.sci.utah.edu/publications/cui10/Cui_Vis2010.pdf",
}

@Article{SCI:Cur2007a,
  author =    "S. Curtis and R.M. Kirby and J.K. Ryan and C.-W.
              Shu",
  title =     "Post-Processing for the Discontinuous Galerkin
              Method Over Non-Uniform Meshes",
  journal =   "SIAM Journal of Scientific Computing",
  volume =    "30",
  number =    "1",
  pages =     "272--289",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/curtis07/Curtis_SIAM_J-Sci-Comp07.pdf",
}

@Article{SCI:Dac2011a,
  author =    "M. Daccarett and T.J. Badger and N. Akoum and N.S.
              Burgon and C. Mahnkopf and G.R. Vergara and E.G.
              Kholmovski and C.J. McGann and D.L. Parker and J.
              Brachmann and R.S. Macleod and N.F. Marrouche",
  title =     "Association of left atrial fibrosis detected by
              delayed-enhancement magnetic resonance imaging and
              the risk of stroke in patients with atrial
              fibrillation",
  journal =   "Journal of the American College of Cardiology",
  volume =    "57",
  number =    "7",
  pages =     "831--838",
  year =      "2011",
  pmid =      "21310320",
  keywords =  "cibc, mri",
  url =       "http://www.sci.utah.edu/publications/daccarett11/Daccarett_JACC2011a.pdf",
}

@Article{SCI:Dac2011b,
  author =    "M. Daccarett and C.J. McGann and N.W. Akoum and
              R.S. MacLeod and N.F. Marrouche",
  title =     "MRI of the left atrium: predicting clinical
              outcomes in patients with atrial fibrillation",
  journal =   "Expert Review of Cardiovascular Therapy",
  volume =    "9",
  number =    "1",
  pages =     "105--111",
  year =      "2011",
  pmid =      "21166532",
  keywords =  "cibc",
  url =       "http://www.sci.utah.edu/publications/daccarett11/Daccarett.pdf",
}

@InProceedings{SCI:Dal2005a,
  author =    "M.S. Dalton and B.J. Ellis and T.J. Lujan and J.A.
              Weiss",
  title =     "MCL Insertion Site and Contact Forces in the
              ACL-Deficient Knee",
  booktitle = "Proceedings, 51th Annual Orthopaedic Research
              Society Meeting",
  volume =    "30",
  pages =     "814",
  year =      "2005",
  keywords =  "computational mechanics, computational
              biomechanics",
  url =       "http://www.sci.utah.edu/publications/dalton05/dalton_ORS_05.pdf",
}

@InProceedings{SCI:Dam2003b,
  author =    "K. Damevski and S.G. Parker",
  title =     "Parallel Remote Method Invocation and M-by-N Data
              Redistribution",
  booktitle = "Proceedings of the 4th Los Alamos Computer Science
              Institute Symposium",
  pages =     "(published on CD)",
  year =      "2003",
  keywords =  "remote visualization, parallel visualization, pse
              problem solving environments, cca",
  url =       "http://www.sci.utah.edu/publications/damevski03/MxNPaperR.pdf",
}

@InProceedings{SCI:Dam2004a,
  author =    "Kostadin Damevski and Steven Parker",
  title =     "Imprecise Exceptions in Distributed Parallel
              Components",
  booktitle = c-EUP2004,
  volume =    "3149",
  pages =     "108--116",
  year =      "2004",
  series =    "{Lecture Notes in Computer Science}",
  month =     "August/September",
  keywords =  "CCA, CCTTSS, Univerisity of Utah, , cca, ccttss,
              univerisity of utah",
}

@InProceedings{SCI:Dam2004b,
  author =    "E. Dam and P.T. Fletcher and S.M. Pizer and G.
              Tracton and J. Rosenman",
  title =     "Prostate Shape Modeling based on Principal
              Geodesic Analysis Bootstrapping",
  booktitle = "Medical Image Computing and Computer-Assisted
              Intervention (MICCAI)",
  pages =     "1008--1016",
  year =      "2004",
  url =       "http://www.sci.utah.edu/publications/dam04/MICCAI04_Dam_prostate.pdf",
}

@InProceedings{SCI:Dam2007a,
  author =    "K. Damevski and K. Zhang and S.G. Parker",
  title =     "Practical Parallel Remote Method Invocation for
              the Babel Compiler",
  booktitle = "Proceedings of the 2007 Symposium on Component and
              Framework Technology in High-Performance and
              Scientific Computing",
  pages =     "131--140",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/damevski07/compf05-damevski.pdf",
}

@InProceedings{SCI:Dam2007b,
  author =    "K. Damevski and A. Swaminathan and S.G. Parker",
  title =     "Highly Scalable Distributed Component Framework
              for Scientific Computing",
  booktitle = "Proceedings of the 3rd International Conference on
              High Performance Computing and Communication (HPCC
              2007)",
  pages =     "(accepted)",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/damevski07/ccaloop.pdf",
}

@InProceedings{SCI:Dam2007c,
  author =    "K. Damevski and A. Swaminathan and S.G. Parker",
  title =     "CCALoop: Scalable Design of a Distributed
              Component Framework",
  booktitle = "Proceedings of the 16th International High
              Performance Distributed Computing Symposium (HPDC
              2007)",
  pages =     "213--214",
  year =      "2007",
}

@Article{SCI:Dam2010a,
  author =    "E.B. Dam and P.T. Fletcher and S.M. Pizer",
  title =     "Automatic shape model building based on principal
              geodesic analysis bootstrapping",
  journal =   "Medical Image Analysis",
  volume =    "12",
  number =    "2",
  pages =     "136--151",
  year =      "2010",
  note =      "Epub Feb 2 2010",
  pmid =      "18178124",
  url =       "http://www.sci.utah.edu/publications/dam10/Dam_MIA2010.pdf",
}

@InProceedings{SCI:Dan2007a,
  author =    "J.D. Daniels and L. Ha and T. Ochotta and C.T.
              Silva",
  title =     "Robust Smooth Feature Extraction from Point
              Clouds",
  booktitle = "Proceedings of the 2007 International Conference
              on Shape Modeling and Applications",
  year =      "2007",
  location =  "Lyon, France",
  url =       "http://www.sci.utah.edu/publications/daniels07/DaHaOc07.pdf",
}

@Article{SCI:Dan2008a,
  author =    "J.D. Daniels and T. Ochotta and L. Ha and C.T.
              Silva",
  title =     "Spline-Based Feature Curves from Point-Sampled
              Geometry",
  journal =   "The Visual Computer",
  volume =    "24",
  number =    "6",
  pages =     "449--462",
  year =      "2008",
}

@InProceedings{SCI:Dan2008b,
  author =    "J.D. Daniels and C.T. Silva and J. Shepherd and E.
              Cohen",
  title =     "Quadrilateral Mesh Simplification",
  booktitle = "ACM Transactions on Graphics (Proceedings of
              SIGGRAPH Asia 2008)",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/daniels08/siggraph-asia2008.pdf",
}

@InProceedings{SCI:Dan2009a,
  author =    "J.D. Daniels and C.T. Silva and E. Cohen",
  title =     "Semi-Regular Quadrilateral-only Remeshing from
              Simplified Base Domains",
  booktitle = "In Proceedings of the 2009 Eurographics Symposium
              on Geometry Processing",
  volume =    "28",
  number =    "5",
  pages =     "1427--1435",
  year =      "2009",
  series =    "Computer Graphics Forum",
  keywords =  "meshing",
  url =       "http://www.sci.utah.edu/publications/daniels09/sgp2009_quadMap.pdf",
}

@InProceedings{SCI:Dan2009b,
  author =    "J.D. Daniels and C.T. Silva and E. Cohen",
  title =     "Localized Quadrilateral Coarsening",
  booktitle = "In Proceedings of the 2009 Eurographics Symposium
              on Geometry Processing",
  volume =    "28",
  number =    "5",
  pages =     "1437--1444",
  year =      "2009",
  series =    "Computer Graphics Forum",
  keywords =  "meshing",
  url =       "http://www.sci.utah.edu/publications/daniels09/sgp2009_qCoarsen.pdf",
}

@InProceedings{SCI:Dan2010a,
  author =    "J. Daniels and E.W. Anderson and L.G. Nonato and
              C.T. Silva",
  title =     "Interactive Vector Field Feature Identification",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics, Proceedings of the 2010 IEEE
              Visualization Conference",
  volume =    "16",
  number =    "6",
  pages =     "1560--1568",
  year =      "2010",
  doi =       "10.1109/TVCG.2010.170",
  pmid =      "20975198",
  url =       "http://www.sci.utah.edu/publications/daniels10/Daniels_Vis2010.pdf",
}

@InProceedings{SCI:Das2004a,
  author =    "R. Das and L. Krishnan and C. Evensen and J.A.
              Weiss",
  title =     "{MCL} Healing at Early Time Points: Biomechanics
              and Gene Expression",
  booktitle = c-ORS2004,
  volume =    "29",
  pages =     "892",
  year =      "2004",
  month =     "March",
  location =  "San Francisco, CA",
}

@InProceedings{SCI:Dat2009a,
  author =    "M. Datar and J. Cates and P.T. Fletcher and S.
              Gouttard and G. Gerig and R.T. Whitaker",
  title =     "Particle Based Shape Regression of Open Surfaces
              with Applications to Developmental Neuroimaging",
  booktitle = "Medical Image Computing and Computer-Assisted
              Intervention – MICCAI 2009",
  volume =    "5762",
  pages =     "167--174",
  year =      "2009",
  series =    "Lecture Notes in Computer Science LNCS",
  doi =       "10.1007/978-3-642-04271-3_21",
  pmid =      "20426109",
  url =       "http://www.sci.utah.edu/publications/datar09/Datar_LNCS2009.pdf",
}

@InProceedings{SCI:Dav2004a,
  author =    "B. Davis and D. Prigent and J. Bechtel and J.
              Rosenman and D.M. Lovelock and S. Joshi",
  title =     "Accommodating Bowel Gas in Large Deformation Image
              Registration for Adaptive Radiation Therapy of the
              Prostate",
  booktitle = "Proceedings of AAPM Annual Meeting",
  year =      "2004",
  month =     "July",
  url =       "http://www.sci.utah.edu/publications/davis04/AAPM04-Davis.pdf",
}

@InProceedings{SCI:Dav2004b,
  author =    "B. Davis and P. Lorenzen and S. Joshi",
  title =     "Large Deformation Minimum Mean Squared Error
              Template Estimation for Computational Anatomy",
  booktitle = "Proceedings of the International Symposium on
              Biomedical Imaging (ISBI)",
  pages =     "173--176",
  year =      "2004",
  month =     "April",
  location =  "Piscataway, NJ",
  url =       "http://www.sci.utah.edu/publications/davis04/ISBI04-Davis-def.pdf",
}

@InProceedings{SCI:Dav2007a,
  author =    "B. Davis and P.T. Fletcher and E. Bullitt and S.
              Joshi",
  title =     "Population Shape Regression From Random Design
              Data",
  booktitle = "Proceedings of the Eleventh IEEE International
              Conference on Computer Vision (ICCV '07)",
  pages =     "1-7",
  year =      "2007",
}

@Article{SCI:Dav2007b,
  author =    "S. Davidson and S. Cohen-Boulakia and A. Eyal and
              B. Ludascher and T. McPhillips and S. Bowers and J.
              Freire",
  title =     "Provenance in Scientific Workflow Systems",
  journal =   "IEEE Data Engineering Bulletin",
  volume =    "32",
  number =    "4",
  pages =     "44--50",
  year =      "2007",
  keywords =  "provenance, workflows, workflow management,
              vistrails",
  url =       "http://www.sci.utah.edu/publications/davidson07/davidson-provenance-lebull-07.pdf",
}

@InProceedings{SCI:Dav2008b,
  author =    "S.B. Davidson and J. Freire",
  title =     "Provenance and Scientific Workflows: Challenges
              and Opportunities",
  booktitle = "Proceedings of the 2008 ACM SIGMOD International
              Conference on Management of Data",
  pages =     "1345--1350",
  year =      "2008",
  isbn =      "978-1-60558-102-6",
  keywords =  "provenance, workflows, workflow management,
              vistrails",
  url =       "http://www.sci.utah.edu/publications/davidson08/Davidson_SIGMOD08a.pdf",
}

@Article{SCI:Dav2010a,
  author =    "B.C. Davis and P.T. Fletcher and E. Bullitt and S.
              Joshi",
  title =     "Population Shape Regression from Random Design
              Data",
  journal =   "International Journal of Computer Vision",
  volume =    "90",
  number =    "1",
  pages =     "255--266",
  year =      "2010",
  month =     "October",
  note =      "Marr Prize Special Issue",
  doi =       "10.1109/ICCV.2007.4408977",
  url =       "http://www.sci.utah.edu/publications/davis10/Davis_Manifold_Kernel_Regression_IJCV2010.pdf",
}

@Article{SCI:Deb2005a,
  author =    "R.E. Debski and J.A. Weiss and W.J. Newman and
              S.M. Moore and P.J. McMahon",
  title =     "Stress and Strain in the Anterior Band of the
              Inferior Glenohumeral Ligament During a Simulated
              Clinical Examination",
  journal =   "Journal of Shoulder and Elbow Surgery",
  volume =    "14",
  pages =     "24S--31S",
  year =      "2005",
  keywords =  "computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/debski05/debski_JSES_AB-IGHL_FEM.pdf",
}

@InProceedings{SCI:Dem2003a,
  author =    "D.E. DeMarle and S.G. Parker and M. Hartner and C.
              Gribble and C.D. Hansen",
  title =     "Distributed Interactive Ray Tracing for Large
              Volume Visualization",
  booktitle = "{IEEE} Symposium on Parallel Visualization and
              Graphics",
  pages =     "87--94",
  year =      "2003",
  month =     "October",
  location =  "Seattle, Wa.",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt, Large volume
              visualization, rtrt, scientific visualization,
              large volume visualization",
  url =       "http://www.sci.utah.edu/publications/demarle03/dirt_vis2003.pdf",
}

@InProceedings{SCI:Dem2004a,
  author =    "D.E. DeMarle and C.P. Gribble and S.G. Parker",
  title =     "Memory-Savvy Distributed Interactive Ray
              Tracing",
  booktitle = c-EGPGV2004,
  year =      "2004",
  editor =    "Dirk Bartz, Bruno Raffin and Han-Wei Shen",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt",
  url =       "http://www.sci.utah.edu/publications/demarle04/epgv_2004.pdf",
}

@Article{SCI:Dem2005a,
  author =    "D.E. DeMarle and C.P. Gribble and S. Boulos and
              S.G. Parker",
  title =     "Memory Sharing for Interactive Ray Tracing on
              Clusters",
  journal =   "Parallel Computing",
  volume =    "31",
  number =    "2",
  pages =     "221--242",
  year =      "2005",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt",
  url =       "http://www.sci.utah.edu/publications/demarle05/dirt-jpdc04.pdf",
}

@InProceedings{SCI:DeT2001a,
  author =    "C. DeTar and A.L. Fogelson and C.R. Johnson and
              C.A. Sikorski",
  title =     "Computational Engineering and Science Program at
              the University of Utah",
  booktitle = c-ICCS2001,
  pages =     "1176--1185",
  year =      "2001",
  editor =    "V. Alexandrov and J. Dongarra and B. Juliano and
              R. Renner and K. Tan",
  month =     "May",
  location =  "San Francisco",
  keywords =  "scientific computing, scientific visualization,
              pse, problem solving environments, imaging,, ,
              imaging",
  url =       "http://www.sci.utah.edu/publications/ces01/ces.pdf",
}

@InProceedings{SCI:Det2004a,
  author =    "C. DeTar and A.L. Fogelson and C.R. Johnson and
              C.A. Sikorski and T. Truong",
  title =     "Computational Engineering and Science Program at
              the University of Utah",
  booktitle = c-ICCS2004,
  pages =     "1202--1209",
  year =      "2004",
  editor =    "M. Bubak et al",
  series =    "Lecture Notes in Computer Science (LNCS) 3039,
              part 4",
  keywords =  "computational engineering, ces program,
              computational science, forward problems inverse
              problems forward simulation inverse solutions,
              finite elements, cfd computational fluid dynamics,
              computational mechanics, computational pde pdes
              computational partial differential equations,
              evaporation",
  url =       "http://www.sci.utah.edu/publications/detar04/ces-iccs04-crj.pdf",
}

@Article{SCI:Dew83a,
  author =    "P.M. Dew and T.F. Buckley and M. Berzins",
  title =     "Systolic Architectures for the Iterative Solution
              of Sparse Matrix Problems",
  journal =   "Parallel Computing",
  year =      "1983",
  editor =    "U. Schendal",
  location =  "North Holland",
}

@TechReport{SCI:Dew83b,
  author =    "P.M. Dew and T.F. Buckley and M. Berzins",
  title =     "Application of {VLSI} Devices to Computational
              Problems in the Gas Industry",
  number =    "163",
  year =      "1983",
  institution = "The University of Leeds",
  type =      "Dept. of Computer Studies Technical Report",
}

@InProceedings{SCI:Die2006a,
  author =    "A. Dietrich and I. Wald and H. Schmidt and K. Sons
              and P. Slusallek",
  title =     "Realtime Ray Tracing for Advanced Visualization in
              the Aerospace Industry",
  booktitle = "Proceedings of the 5th Paderborner Workshop
              Augmented and Virtual Reality in der
              Produktentstehung",
  year =      "2006",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/dietrich06/aerospace.pdf",
}

@InProceedings{SCI:Die2008b,
  author =    "C. Dietrich and J. Comba and L. Nedel and C.E.
              Scheidegger and C.T. Silva",
  title =     "Edge Groups: A New Approach to Understanding the
              Mesh Quality of Marching Methods",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (Proceedings of IEEE Visualization
              2008)",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/dietrich08/vis2008b.pdf",
}

@Article{SCI:Die2009a,
  author =    "C. Deitrich and C.E. Scheidegger and J. Schreiner
              and J. Comba and L.P. Nedel and C.T. Silva",
  title =     "Edge Transformations for Improving Mesh Quality of
              Marching Cubes",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "15",
  number =    "1",
  pages =     "150--159",
  year =      "2009",
  month =     "Sept/Oct",
  keywords =  "meshing",
  url =       "http://www.sci.utah.edu/publications/dietrich09/tvcg2009.pdf",
}

@InProceedings{SCI:Dil2006a,
  author =    "S.E. Dillard and V. Natarajan and G.H. Weber and
              V. Pascucci and B. Hamann",
  title =     "Tessellation of Quadratic Elements",
  booktitle = "ISAAC",
  pages =     "722--731",
  year =      "2006",
}

@Article{SCI:Don2006a,
  author =    "S. Dong and P.-T. Bremer and M. Garland and V.
              Pascucci and J.C. Hart",
  title =     "Spectral Surface Quadrangulation",
  journal =   "{ACM} Transactions on graphics: {ACM} {SIGGRAPH}
              2006 Papers",
  pages =     "1057--1066",
  year =      "2006",
  publisher = "ACM Press",
  address =   "New York, NY, USA",
  location =  "Boston, Massachusetts",
  isbn =      "1-59593-364-6",
  url =       "http://www.sci.utah.edu/publications/dong06/Dong_Spec_Surf_Quad.pdf",
}

@InProceedings{SCI:Dou2003a,
  author =    "C.C. Douglas and M. Cole and Y. Efendiev and R.
              Ewing and V. Ginting and C.R. Johnson and G.M.
              Jones and R. Lazarov and C. Shannon and J.
              Simpson",
  title =     "Workshop on Dynamic Data-Driven Application
              Systems",
  booktitle = "ICCS 2003",
  year =      "2003",
  month =     "June 2-3",
  location =  "Melbourne, Australia",
  keywords =  "scirun, pse, problem solving environments, data
              driven",
  url =       "http://www.sci.utah.edu/publications/douglas03/douglas.pdf",
}

@InProceedings{SCI:Dou2003b,
  author =    "C.C. Douglas and C.E. Shannon and Y. Efendiev and
              R.E. Ewing and V. Ginting and R. Lazanov and M.J.
              Cole and G.M. Jones and C.R. Johnson and J.
              Simpson",
  title =     "A Note on Dynamic Data Driven Application
              Simulation ({DDDAS}) Using Virtual Telemetry",
  booktitle = "International Conference on Parallel Algorithms
              and Computing Environments",
  pages =     "pp.193--198",
  year =      "2003",
  keywords =  "scirun, pse, problem solving environments, data
              driven",
  url =       "http://www.sci.utah.edu/publications/douglas03/icpace2003.pdf",
}

@InProceedings{SCI:Dou2006a,
  author =    "C.C. Douglas and J.C. Harris and M. Iskandarani
              and C.R. Johnson and R.J. Lodder and S.G. Parker
              and M.J. Cole and R. Ewing and Y. Efendiev and R.
              Lazarov and G. Qin",
  title =     "Dynamic Contaminant Identification in Water",
  booktitle = "Proceedings of Computational Science - ICCS 2006:
              6th International Conference, Part III",
  volume =    "3993",
  pages =     "393--400",
  year =      "2006",
  editor =    "Vassil N. Alexandrov, Geert Dick van Albada, Peter
              M.A. Sloot, Jack J. Dongarra",
  series =    "Lecture Notes in Computer Science series",
  publisher = "Springer-Verlag Heidelberg",
  location =  "Reading, UK, May 28-31, 2006",
  url =       "http://www.sci.utah.edu/publications/douglas06/sssi-cid.pdf",
}

@Article{SCI:Dou2007a,
  author =    "C.C. Douglas and M.J. Cole and P. Dostert and Y.
              Efendiev and R.E. Ewing and G. Haase and J. Hatcher
              and M. Iskandarani and C.R. Johnson and R.A.
              Lodder",
  title =     "Dynamically identifying and tracking contaminants
              in water bodies",
  journal =   "Proceedings of the 7th International Conference on
              Computational Science (ICCS) 2007, Part I",
  volume =    "4887",
  pages =     "1002--1009",
  year =      "2007",
  editor =    "Y. Shi, G. D. van Albada, P. M. A. Sloot, and J.
              J. Dongarra",
  series =    "Lecture Notes in Computer Science (LNCS)",
  publisher = "Springer-Verlag, Berlin Heidelberg",
  month =     "May",
  location =  "Beijing, China",
  url =       "http://www.sci.utah.edu/publications/douglas07/Douglas_ICCS2007.pdf",
}

@Article{SCI:Dou2007b,
  author =    "C.C. Douglas and D. Bansal and J.D. Beezley and
              L.S. Bennethum and S. Chakraborty and J.L. Coen and
              Y. Efendiev and R.E. Ewing and J. Hatcher and M.
              Iskandarani and C.R. Johnson and M. Kim and D. Li
              and R.A. Lodder and J. Mandel and G. Qin and A.
              Vodacek",
  title =     "Dynamic data-driven application systems for empty
              houses, contaminat tracking, and wildland fireline
              prediction",
  journal =   "Grid-Based Problem Solving Environments",
  pages =     "255-272",
  year =      "2007",
  editor =    "P.W. Gaffney and J.C.T. Pool",
  series =    "IFIP series",
  publisher = "Springer-Verlag, Berlin",
  doi =       "10.1007/978-0-387-73659-4_14",
  url =       "http://www.sci.utah.edu/publications/douglas07/Douglas_GBPSE2007.pdf",
}

@InProceedings{SCI:Dra2008a,
  author =    "G. Draper and R. Riesenfeld",
  title =     "Who Votes For What? A Visual Query Language for
              Opinion Data",
  booktitle = "Proceedings of {IEEE} Information Visualization
              (InfoVis 2008)",
  volume =    "14",
  number =    "6",
  pages =     "1197--1204",
  year =      "2008",
  month =     "Nov/Dec",
  url =       "http://www.sci.utah.edu/publications/draper08/Draper_infovis2008.pdf",
}

@InProceedings{SCI:Dra2008b,
  author =    "G. Draper and Y. Livnat and R. Riesenfeld",
  title =     "A Visual Query Language for Correlation Discovery
              and Management",
  booktitle = "Proceedings of Visual and Iconic Language
              Conference (VaIL 2008)",
  pages =     "14--23",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/draper08/Draper_vail2008.pdf",
}

@Article{SCI:Dru2010a,
  author =    "N.J. Drury and B.J. Ellis and J.A. Weiss and P.J.
              McMahon and R.E. Debski",
  title =     "The impact of glenoid labrum thickness and modulus
              on labrum and glenohumeral capsule function",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "132",
  number =    "12",
  pages =     "121003--121010",
  year =      "2010",
  note =      "Awarded 2010 Skalak Best Paper!",
  doi =       "10.1115/1.4002622",
  url =       "http://www.sci.utah.edu/publications/drury10/drury_jbme_2010.pdf",
}

@Article{SCI:Dru2011a,
  author =    "N.J. Drury and B.J. Ellis and J.A. Weiss and P.J.
              McMahon and R.E. Debski",
  title =     "{F}inding consistent strain distributions in the
              glenohumeral capsule between two subjects:
              Implications for development of physical
              examinations",
  journal =   "Journal of Biomechanics",
  volume =    "44",
  number =    "4",
  pages =     "607-613",
  year =      "2011",
  month =     "February",
  doi =       "10.1016/j.jbiomech.2010.11.018",
  url =       "http://www.sci.utah.edu/publications/drury11/Drury_JBME2011.pdf",
}

@InProceedings{SCI:Du2004a,
  author =    "F. Du and S. Amer-Yahia and J. Freire",
  title =     "ShreX: Managing XML Documents in Relational
              Databases",
  booktitle = "Proceedings of the 13th International Conference
              on Very Large Data Bases",
  volume =    "30",
  pages =     "1297--1300",
  year =      "2004",
  isbn =      "0-12-088469-0",
  url =       "http://www.sci.utah.edu/publications/du04/Du_VLDB2004.pdf",
}

@Article{SCI:Due2000a,
  author =    "B.S. Duerstock and C.L. Bajaj and V. Pascucci and
              D.R. Schikore and K. Lin and R.B. Borgens",
  title =     "Advances in Three-Dimensional Reconstruction of
              the Experimental Spinal Cord Injury",
  journal =   "Computerized Medical Imaging and Graphics",
  volume =    "24",
  number =    "6",
  pages =     "389--406",
  year =      "2000",
}

@Article{SCI:Dur2002a,
  author =    "L.J.K. Durbeck and M. Berzins",
  title =     "Unstructured Tetrahedral Mesh Quality Analysis
              Using an Interactive Haptic and Visual Interface",

  journal =   j-CVS,
  volume =    "5",
  number =    "3",
  pages =     "179--192",
  year =      "2002",
  publisher = "Springer-Verlag",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, atmospherics weather
              meterology, scientific computing",
  url =       "http://www.sci.utah.edu/publications/ldurbeck02/ldmb.pdf",
}

@Article{SCI:Dur2009a,
  author =    "S. Durrleman and X. Pennec and A. Trouvé and G.
              Gerig and N. Ayache",
  title =     "Spatiotemporal atlas estimation for developmental
              delay detection in longitudinal datasets",
  journal =   "Medical Image Computing and Computer-Assisted
              Intervention – MICCAI 2009",
  volume =    "5761",
  pages =     "297--304",
  year =      "2009",
  series =    "Lecture Notes in Computer Science LNCS",
  doi =       "10.1007/978-3-642-04268-3_37",
  pmid =      "20426000",
  url =       "http://www.sci.utah.edu/publications/durrleman09/Durrleman_MICCAI2009.pdf",
}

@InProceedings{SCI:Dur2010a,
  author =    "S. Durrleman and X. Pennec and A. Trouvé and N.
              Ayache and J. Braga",
  title =     "Comparison of the endocast growth of chimpanzees
              and bonobos via temporal regression and
              spatiotemporal registration",
  booktitle = "Proceedings of the MICCAI Workshop on
              Spatio-Temporal Image Analysis for Longitudinal and
              Time-Series Image Data",
  pages =     "(in press)",
  year =      "2010",
  month =     "September",
  location =  "Beijing, China",
  url =       "http://www.sci.utah.edu/publications/durrleman10/Durrleman_STIA10.pdf",
}

@Article{SCI:Dur2010b,
  author =    "S. Durrleman and P. Fillard and X. Pennec and A.
              Trouvé and N. Ayache",
  title =     "Registration, Atlas Estimation and Variability
              Analysis of White Matter Fiber Bundles Modeled as
              Currents",
  journal =   "NeuroImage",
  volume =    "55",
  number =    "3",
  pages =     "1073--1090",
  year =      "2010",
  doi =       "10.1016/j.neuroimage.2010.11.056",
  url =       "http://www.sci.utah.edu/publications/durrleman10/Durrleman_NImg10.pdf",
}

@InProceedings{SCI:Dur2011a,
  author =    "S. Durrleman and M. Prastawa and G. Gerig and S.
              Joshi",
  title =     "Optimal data-driven sparse parameterization of
              diffeomorphisms for population analysis",
  booktitle = "Proceedings of the IPMI 2011 conference",
  volume =    "6801/2011",
  pages =     "123--134",
  year =      "2011",
  series =    "Springer LNCS",
  month =     "July",
  doi =       "10.1007/978-3-642-22092-0_11",
  pmid =      "20516153",
  url =       "http://www.sci.utah.edu/publications/durrleman11/Durrleman_LNCS2011.pdf",
}

@InProceedings{SCI:Dur2011b,
  author =    "S. Durrleman and X. Pennec and A. Trouvé and N.
              Ayache and J. Braga",
  title =     "Comparison of the endocranial ontogenies between
              chimpanzees and bonobos via temporal regression and
              spatiotemporal registration",
  booktitle = "Journal of Human Evolution",
  pages =     "(to appear)",
  year =      "2011",
  doi =       "10.1016/j.jhevol.2011.10.004",
  url =       "http://www.sci.utah.edu/publications/durrleman11/Durrleman_JHE2011.pdf",
}

@InProceedings{SCI:Dur98a,
  author =    "L.J.K Durbeck and N.J. Macias and D.M. Weinstein
              C.R. and J.M. Hollerbach",
  title =     "{SCIR}un/Haptic Display for Flow Fields",
  booktitle = "Proceedings of the Third {PHANTOM} Users Group
              Workshop",
  pages =     "71--75",
  year =      "1998",
  editor =    "J.K. Salisbury and M.A. Srinivasan",
  series =    "AI Lab Technical Report No. 1643 and {RLE}
              Technical Report No. 624",
  month =     "Dec",
  keywords =  "scirun, haptic, visual haptic workbench, vr
              virtual reality haptics",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/pug98.pdf",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/pug98.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/pug98.ps",
}

@InProceedings{SCI:Dur99c,
  author =    "L. Durbeck",
  title =     "Evaporation: A Technique for Visualizing Mesh
              Quality",
  booktitle = "8th International Meshing Roundtable",
  pages =     "259--265",
  year =      "1999",
  organization = "Sandia National Laboratories",
  month =     "Oct",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, evaporation,
              scirun, atmospherics weather meterology",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/roundtable.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/roundtable.ps",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/roundtable.pdf",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/evap.zip",
}

@InProceedings{SCI:Ede2003a,
  author =    "H. Edelsbrunner and J. Harer and V. Natarajan and
              V. Pascucci",
  title =     "Morse Complexes for Piecewise Linear
              3-Manifolds",
  booktitle = "Proceedings of the 19th ACM Symposium on
              Computational Geometry",
  pages =     "361--370",
  year =      "2003",
  month =     "June",
  note =      "UCRL-PROC-208698",
}

@InProceedings{SCI:Ede2004a,
  author =    "H. Edelsbrunner and J. Harer and V. Natarajan and
              V. Pascucci",
  title =     "Local and Global Comparison of Continuous
              Functions",
  booktitle = "Proceedings of the IEEE Conference on
              Visualization ({VIS}-04)",
  pages =     "275--280",
  year =      "2004",
  month =     "October",
  note =      "UCRL-PROC-208677",
}

@InProceedings{SCI:Ede2004b,
  author =    "H. Edelsbrunner and J. Harer and A. Mascarenhas
              and V. Pascucci",
  title =     "Time-Varying Reeb Graphs for Continuous Space-Time
              Data",
  booktitle = "SCG '04: Proceedings of the Twentieth Annual
              Symposium on Computational Geometry",
  pages =     "366--372",
  year =      "2004",
  publisher = "ACM Press",
  location =  "Brooklyn, New York, USA",
  note =      "UCRL-PROC-208697",
  isbn =      "1-58113-885-7",
}

@InProceedings{SCI:Ede2006a,
  author =    "H. Edelsbrunner and D. Morozov and V. Pascucci",
  title =     "Persistence-based Simplification of Real-Valued
              Functions on 2-Manifolds",
  booktitle = "Proceedings of the 22nd International Annual
              Symposium on Computational Geometry",
  pages =     "212--220",
  year =      "2006",
  note =      "To appear",
}

@InProceedings{SCI:Edm2011a,
  author =    "M. Edmunds and T. McLoughlin and R.S. Laramee and
              G. Chen and E. Zhang and N. Max",
  title =     "Automatic Stream Surface Seeding",
  booktitle = "EUROGRAPHICS 2011 Short Papers",
  pages =     "53--56",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/edmunds11/Edmunds_EG11short2049_AutomaticStreamSurfaceSeeding.pdf",
}

@InProceedings{SCI:Eid2006a,
  author =    "E. Eide and L. Stoller and T. Stack and J. Freire
              and J. Lepreau",
  title =     "Integrated Scientific Workflow Management for the
              Emulab Network Testbed",
  booktitle = "Proceedings of the 2006 USENIX Annual Technical
              Conference",
  pages =     "33",
  year =      "2006",
  keywords =  "provenance, workflows, workflow management,
              vistrails",
}

@InProceedings{SCI:Ela2001a,
  author =    "V. Elangovan and R.T. Whitaker",
  title =     "From Sinograms to Surfaces: A Direct Approach to
              Segmenting Tomographic Data",
  booktitle = c-MICCAI2001,
  pages =     "213--223",
  year =      "2001",
  month =     "October",
  keywords =  "ip image processing signal processing,
              segmentation, surface processing, imaging",
  url =       "http://www.sci.utah.edu/publications/miccai01/sino_surf.pdf",
}

@Article{SCI:Elk2011a,
  author =    "J.M. Elkins and J.S. Stroud and M.J. Rudert and Y.
              Tochigi and D.R. Pedersen and B.J. Ellis and J.J.
              Callaghan and J.A. Weiss and T.D. Brown",
  title =     "{T}he capsule's contribution to total hip
              construct stability - a finite element analysis",
  journal =   "Journal of Orthopedic Research",
  volume =    "29",
  number =    "11",
  pages =     "1642--1648",
  year =      "2011",
  month =     "November",
  note =      "William Harris, MD Award",
  doi =       "10.1002/jor.21435",
  url =       "http://www.sci.utah.edu/publications/elkins11/Elkins_JOR2011.pdf",
}

@Article{SCI:Ell2006a,
  author =    "B.J. Ellis and R.E. Debski and S.M. Moore and P.J.
              McMahon and J.A. Weiss",
  title =     "Methodology and Sensitivity Studies for Finite
              Element Modeling of the Inferior Glenohumeral
              Ligament Complex",
  journal =   j-BM,
  volume =    "40",
  number =    "3",
  pages =     "603--612",
  year =      "2006",
  month =     "January",
  keywords =  "finite elements, computational mechanics,
              computational biomechanics, multiscale tissue
              modeling multiscale tissue simulation, mrl",
  url =       "http://www.sci.utah.edu/publications/ellis06/ellis_jbiomech_2006.pdf",
}

@Article{SCI:Ell2006b,
  author =    "B.J. Ellis and T.J. Lujan and M.S. Dalton and J.A.
              Weiss",
  title =     "MCL Insertion Site and Contact Forces in the
              ACL-Deficient Knee",
  journal =   "Journal of Orthopaedic Research",
  volume =    "24",
  number =    "4",
  pages =     "800--810",
  year =      "2006",
  publisher = "Elsevier",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/ellis06/ellis_jor_2006.pdf",
}

@InProceedings{SCI:Ell2008a,
  author =    "T. Ellkvist and D. Koop and E.W. Anderson and J.
              Freire and C.T. Silva",
  title =     "Using Provenance to Support Real-Time
              Collaborative Design of Workflows",
  booktitle = "Proceedings of the Second International Provenance
              and Annotation Workshop ({IPAW} 2008)",
  pages =     "266--279",
  year =      "2008",
  keywords =  "vistrails, provenance, workflow management,
              collaborative workflow design",
  url =       "http://www.sci.utah.edu/publications/ellkvist08/ipaw2008c.pdf",
}

@InProceedings{SCI:Ell2008b,
  author =    "T. Ellkvist and D. Koop and J. Freire and C.T.
              Silva and L. Stromback",
  title =     "Using Mediation to Achieve Provenance
              Interoperability",
  booktitle = "Proceedings of the 2008 Fourth IEEE International
              Conference on eScience",
  pages =     "398--399",
  year =      "2008",
  keywords =  "vistrails, provenance, workflows, workflow
              management",
}

@InProceedings{SCI:Ell2009a,
  author =    "T. Ellkvist and L. Stromback and L. Lins and J.
              Freire",
  title =     "A First Study on Strategies for Generating
              Workflow Snippets",
  booktitle = "Proceedings of the ACM SIGMOD Intenational
              Workshop on Keyword Search on Structured Data
              (KEYS)",
  pages =     "15--20",
  year =      "2009",
  isbn =      "978-1-60558-570-3",
  keywords =  "data searching",
  url =       "http://www.sci.utah.edu/publications/ellkvist09/workflowsnippets-keys2009.pdf",
}

@InProceedings{SCI:Ell2009b,
  author =    "T. Ellkvist and D. Koop and J. Freire and C.T.
              Silva and L. Stromback",
  title =     "Using Mediation to Achieve Provenance
              Interoperability",
  booktitle = "Proceedings of the IEEE International Workshop on
              Scientific Workflows, 2009",
  pages =     "291--298",
  year =      "2009",
  isbn =      "978-0-7695-3708-5",
  keywords =  "workflow management, provenance, vistrails",
  url =       "http://www.sci.utah.edu/publications/ellkvist09/provinterop-swf2009.pdf",
}

@Article{SCI:Els2010a,
  author =    "M. El-Sayed and R.G. Steen and M.D. Poe and T.C.
              Bethea and G. Gerig and J. Lieberman and L.
              Sikich",
  title =     "Deficits in gray matter volume in psychotic youth
              with schizophrenia-spectrum disorders are not
              evident in psychotic youth with mood disorders",
  journal =   "J Psychiatry Neurosci",
  year =      "2010",
  month =     "July",
}

@Article{SCI:Els2010b,
  author =    "M. El-Sayed and R.G. Steen and M.D. Poe and T.C.
              Bethea and G. Gerig and J. Lieberman and L.
              Sikich",
  title =     "Brain volumes in psychotic youth with
              schizophrenia and mood disorders",
  journal =   "Journal of Psychiatry and Neuroscience",
  volume =    "35",
  number =    "4",
  pages =     "229--236",
  year =      "2010",
  month =     "July",
  pmid =      "20569649",
  url =       "http://www.sci.utah.edu/publications/elsayed10/El-Sayed_JPN2010b.pdf",
}

@InProceedings{SCI:Eti2009a,
  author =    "T. Etiene and C.E. Scheidegger and L.G. Nonato and
              R. Kirby and C.T. Silva",
  title =     "Verifiable Visualization for Isosurface
              Extraction",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics, Proceedings of the 2009 IEEE
              Visualization Conference",
  volume =    "15",
  number =    "6",
  pages =     "1227--1234",
  year =      "2009",
  month =     "Sept/Oct",
  url =       "http://www.sci.utah.edu/publications/etiene2009/verifiable-vis.pdf",
}

@TechReport{SCI:Eti2010a,
  author =    "T. Etiene and L.G. Nonato and C.E. Scheidegger and
              J. Tierny and T.J. Peters and V. Pascucci and R.M.
              Kirby and C.T. Silva",
  title =     "Topology Verification for Isosurface Extraction",
  number =    "UUSCI-2010-003",
  year =      "2010",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2010-003.pdf",
}

@Article{SCI:Eti2011b,
  author =    "T. Etiene and L.G. Nonato and C. Scheidegger and
              J. Tierny and T.J. Peters and V. Pascucci and R.M.
              Kirby and C.T. Silva",
  title =     "Topology Verfication for Isosurface Extraction",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  pages =     "(accepted)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/etiene11/Etiene_TVCG2011.pdf",
}

@InProceedings{SCI:Fai2003a,
  author =    "R. Fairlie and C.E. Goodyer and M. Berzins and
              L.E. Scales",
  title =     "Numerical Modelling of Thermal Effects in
              Elastohydrodynamic Lubrication Solvers",
  booktitle = "Tribological Research and Design for Engineering
              Systems, Proceedings of the 29th Leeds-Lyon
              Symposium on Tribology",
  pages =     "675--683",
  year =      "2003",
  editor =    "D. Dowson, et al.",
  publisher = "Elsevier",
  keywords =  "EHL",
  url =       "http://www.sci.utah.edu/publications/fairlie03/leedslyon02pap.pdf",
}

@InProceedings{SCI:Fed2008a,
  author =    "A. Fedorov and E. Billet and M. Prastawa and G.
              Gerig and A. Radmanesh and S.K. Warfield and R.
              Kikinis and N. Chrisochoides",
  title =     "Evaluation of Brain MRI Alignment with the Robust
              Hausdorff Distance Measures",
  booktitle = "Lecture Notes in Computer Science",
  volume =    "5358",
  pages =     "594--603",
  year =      "2008",
  publisher = "Springer",
  doi =       "10.1007/978-3-540-89639-5_57",
  url =       "http://www.sci.utah.edu/publications/fedorov08/Fedorov_LCNS2008a.pdf",
}

@InProceedings{SCI:Fis2011a,
  author =    "J. Fishbaugh and S. Durrleman and G. Gerig",
  title =     "Estimation of Smooth Growth Trajectories with
              Controlled Acceleration from Time Series Shape
              Data",
  booktitle = "Proceedings of Medical Image Computing and
              Computer Assisted Intervention (MICCAI'11)",
  volume =    "14",
  number =    "2",
  pages =     "401--408",
  year =      "2011",
  series =    "LNCS 6892",
  keywords =  "na-mic",
  url =       "http://www.sci.utah.edu/publications/fishbaugh11/fishbaugh_miccai2011.pdf",
}

@InProceedings{SCI:Fis2012a,
  author =    "J. Fishbaugh and S. Durrleman and G. Gerig",
  title =     "A framework for longitudinal data analysis via
              shape regression",
  booktitle = "SPIE",
  pages =     "(to appear)",
  year =      "2012",
  url =       "http://www.sci.utah.edu/publications/fishbaugh12/Fishbaugh_spie2012_final-annot.pdf",
}

@InProceedings{SCI:Fle2002a,
  author =    "P.T. Fletcher and S.M. Pizer and G. Gash and S.
              Joshi",
  title =     "Deformable M-rep segmentation of object
              complexes",
  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging (ISBI)",
  pages =     "26--29",
  year =      "2002",
  url =       "http://www.sci.utah.edu/publications/fletcher02/ISBI02-fletcher-defmrep.pdf",
}

@Article{SCI:Fle2003a,
  author =    "P.T. Fletcher and S. Joshi and C. Lu and S.
              Pizer",
  title =     "Gaussian Distributions on Lie Groups and Their
              Application to Statistical Shape Analysis",
  journal =   "Inf Process Med Imaging",
  volume =    "18",
  pages =     "450--462",
  year =      "2003",
  note =      "Runner-up for the Francois Erbsmann Prize",
  url =       "http://www.sci.utah.edu/publications/fletcher03/IPMI03_Fletcher_GausDist.pdf",
}

@InProceedings{SCI:Fle2003b,
  author =    "P.T. Fletcher and C. Lu and S. Joshi",
  title =     "Statistics of Shape via Principal Component
              Analysis on Lie Groups",
  booktitle = "Proceedings of the Conference on Computer Vision
              and Pattern Recognition (CVPR)",
  pages =     "95--101",
  year =      "2003",
  month =     "June",
  location =  "Los Alamitos, CA",
  url =       "http://www.sci.utah.edu/publications/fletcher03/CVPR03_Fletcher_StatsShape.pdf",
}

@Article{SCI:Fle2003c,
  author =    "S. Fleishman and M. Alexa and D. Cohen-Or and C.T.
              Silva",
  title =     "Progressive Point Set Surfaces",
  journal =   "ACM Transactions on Graphics (TOG)",
  volume =    "22",
  number =    "4",
  pages =     "997--1011",
  year =      "2003",
  issn =      "0730-0301",
  url =       "http://www.sci.utah.edu/publications/fleishman03/ppss.pdf",
}

@Article{SCI:Fle2004a,
  author =    "P.T. Fletcher and C. Lu and S.M. Pizer and S.
              Joshi",
  title =     "Principal Geodesic Analysis for the Study of
              Nonlinear Statistics of Shape",
  journal =   "IEEE Trans Med Imaging",
  volume =    "23",
  number =    "8",
  pages =     "995--1005",
  year =      "2004",
  month =     "August",
  url =       "http://www.sci.utah.edu/publications/fletcher04/TMI04_Fletcher_PGA.pdf",
}

@Article{SCI:Fle2004b,
  author =    "P.T. Fletcher and S. Joshi",
  title =     "Principal Geodesic Analysis on Symmetric Spaces:
              Statistics of Diffusion Tensors",
  journal =   "Computer Vision and Mathematical Methods in
              Medical and Biomedical Image Analysis",
  volume =    "3117",
  pages =     "87--98",
  year =      "2004",
  series =    "Springer-Verlag, Lecture Notes In Computer
              Science",
  doi =       "10.1109/TMI.2004.831793",
  url =       "http://www.sci.utah.edu/publications/fletcher04/CVAMIA04_Fletcher_DTStats.pdf",
}

@PhdThesis{SCI:Fle2004c,
  author =    "P.T. Fletcher",
  title =     "Statistical Variability in Nonlinear Spaces:
              Application to Shape Analysis and DT-MRI",
  year =      "2004",
  school =    "University of North Carolina Department of
              Computer Science",
  month =     "August",
  note =      "Ph.D. Thesis",
  url =       "http://www.sci.utah.edu/publications/fletcher04/fletcher_thesis.pdf",
}

@InBook{SCI:Fle2006a,
  author =    "P.T. Fletcher and S.M. Pizer and S. Joshi",
  title =     "Shape Variation of Medial Axis Representations via
              Principal Geodesic Analysis on Symmetric Spaces",
  booktitle = "Statistics and Analysis of Shapes",
  pages =     "29--60",
  year =      "2006",
  editor =    "H. Krim and A. Yezzi",
  chapter =   "2",
  publisher = "Birkhauser",
}

@InProceedings{SCI:Fle2006b,
  author =    "P.T. Fletcher and R.T. Whitaker",
  title =     "Riemannian Metrics on the Space of Solid Shapes",
  booktitle = "MICCAI Workshop on Mathematical Foundations of
              Computational Anatomy",
  year =      "2006",
  month =     "October",
  url =       "http://www.sci.utah.edu/publications/fletcher06/FletcherMFCA2006.pdf",
}

@Article{SCI:Fle2007a,
  author =    "P.T. Fletcher and S. Joshi",
  title =     "Riemannian Geometry for the Statistical Analysis
              of Diffusion Tensor Data",
  journal =   "Signal Processing",
  volume =    "87",
  number =    "2",
  pages =     "250--262",
  year =      "2007",
  month =     "February",
  keywords =  "diffusion tensor,",
  url =       "http://www.sci.utah.edu/publications/fletcher07/FletcherTensorStatsSP.pdf",
}

@Article{SCI:Fle2007b,
  author =    "P.T. Fletcher and R. Tao and W.-K. Jeong and R.T.
              Whitaker",
  title =     "A Volumetric Approach to Quantifying
              Region-to-Region White Matter Connectivity in
              Diffusion Tensor MRI",
  journal =   "Information Processing in Medical Imaging",
  volume =    "4584/2007",
  pages =     "346--358",
  year =      "2007",
  keywords =  "tensor field methods, diffusion tensor imaging,
              neuro brain",
}

@InProceedings{SCI:Fle2007c,
  author =    "P.T. Fletcher and S. Powell and N.L. Foster and S.
              Joshi",
  title =     "Quantifying Metabolic Asymmetry Modulo Structure
              in Alzheimer's Disease",
  booktitle = "Information Processing in Medical Imaging
              (IPMI)",
  number =    "LNCS 4584",
  pages =     "446--457",
  year =      "2007",
  pmid =      "17633720",
  keywords =  "alzheimers",
}

@InProceedings{SCI:Fle2008a,
  author =    "P.T. Fletcher and S. Venkatasubramanian and S.
              Joshi",
  title =     "Robust Statistics on Riemannian Manifolds via the
              Geometric Median",
  booktitle = "{IEEE} Conference on Computer Vision and Pattern
              Recognition ({CVPR} 2008)",
  pages =     "1--8",
  year =      "2008",
  doi =       "10.1109/CVPR.2008.4587747",
  url =       "http://www.sci.utah.edu/publications/fletcher08/Fletcher_CVPR2008.pdf",
}

@Article{SCI:Fle2009a,
  author =    "P.T. Fletcher PT and S. Venkatasubramanian and S.
              Joshi",
  title =     "The geometric median on Riemannian manifolds with
              application to robust atlas estimation",
  journal =   "Neuroimage",
  volume =    "45",
  number =    "1",
  pages =     "S143--S152",
  year =      "2009",
  month =     "March",
  pmid =      "19056498",
  url =       "http://www.sci.utah.edu/publications/fletcher09/Fletcher_NeuroImage2009.pdf",
}

@InProceedings{SCI:Fle2009b,
  author =    "P.T. Fletcher and J. Moeller and J.M. Phillips and
              S. Venkatasubramanian",
  title =     "Computing Hulls In Positive Definite Space",
  booktitle = "In Proceedings of the 19th Fall Workshop on
              Computational Geometry",
  year =      "2009",
  month =     "November",
  url =       "http://www.sci.utah.edu/publications/fletcher09/Fletcher_WorksCompGeo2009.pdf",
}

@Article{SCI:Fle2010a,
  author =    "P.T. Fletcher and R.T. Whitaker and R. Tao and
              M.B. DuBray and A. Froehlich and C. Ravichandran
              and A.L. Alexander and E.D. Bigler and N. Lange and
              J.E. Lainhart",
  title =     "Microstructural connectivity of the arcuate
              fasciculus in adolescents with high-functioning
              autism",
  journal =   "NeuroImage",
  volume =    "51",
  number =    "3",
  pages =     "1117--1125",
  year =      "2010",
  month =     "July",
  note =      "Epub Feb 2 2010",
  pmid =      "20132894",
  url =       "http://www.sci.utah.edu/publications/fletcher10/Fletcher_Neuroimage2010.pdf",
}

@InProceedings{SCI:Fle2011a,
  author =    "P.T. Fletcher",
  title =     "Geodesic Regression on Riemannian Manifolds",
  booktitle = "Proceedings of the Third MICCIA International
              Workshop on Mathematical Foundations of
              Computational Anatomy (MFCA)",
  pages =     "75--86",
  year =      "2011",
  location =  "Toronto, Canada",
  url =       "http://www.sci.utah.edu/publications/fletcher11/Fletcher_MFCA2011.pdf",
}

@Article{SCI:Fle2011b,
  author =    "P.T. Fletcher and J. Moeller and J. Phillips and
              S. Venkatasubramanian",
  title =     "Horoball hulls and extents in positive definite
              space",
  journal =   "Algorithms and Data Structures",
  volume =    "6844/2011",
  pages =     "386--398",
  year =      "2011",
  series =    "Lecture Notes in Computer Science (LNCS)",
  doi =       "10.1007/978-3-642-22300-6_33",
  url =       "http://www.sci.utah.edu/publications/fletcher11/Fletcher_ADS2011.pdf",
}

@InProceedings{SCI:Fog2009b,
  author =    "T. Fogal and J. Krueger",
  title =     "Size Matters - Revealing Small Scale Structures in
              Large Datasets",
  booktitle = "Proceedings of the World Congress on Medical
              Physics and Biomedical Engineering, September 7 -
              12, 2009, Munich, Germany",
  volume =    "25/13",
  pages =     "41--44",
  year =      "2009",
  series =    "IFMBE Proceedings",
  publisher = "Springer Berlin Heidelberg",
  url =       "http://www.sci.utah.edu/publications/fogal09/Fogal_IFMBE2009b.pdf",
}

@InProceedings{SCI:Fog2010a,
  author =    "T. Fogal and J. Krueger",
  title =     "Tuvok, an Architecture for Large Scale Volume
              Rendering",
  booktitle = "Proceedings of the 15th International Workshop on
              Vision, Modeling, and Visualization",
  pages =     "(accepted)",
  year =      "2010",
  month =     "November",
  url =       "http://www.sci.utah.edu/publications/fogal10/Fogal_Tuvok2010.pdf",
}

@InProceedings{SCI:Fog2010b,
  author =    "T. Fogal and H. Childs and S. Shankar and J.
              Krueger and R.D. Bergeron and P. Hatcher",
  title =     "Large Data Visualization on Distributed Memory
              Multi-GPU Clusters",
  booktitle = "Proceedings of High Performance Graphics 2010",
  pages =     "57--66",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/fogal10/Fogal_MultiGPU2010.pdf",
}

@InProceedings{SCI:Fog2011a,
  author =    "T. Fogal and Jens Krueger",
  title =     "Efficient I/O for Parallel Visualization",
  booktitle = "Proceedings of the Eurographics Symposium on
              Parallel Graphics and Visualization (2011)",
  pages =     "81--90",
  year =      "2011",
  editor =    "T. Kuhlen, R. Pajarola, and K. Zhou",
  url =       "http://www.sci.utah.edu/publications/fogal11/Fogal_PracticalIO.pdf",
}

@InProceedings{SCI:For2000a,
  author =    "A. Forsberg and R.M. Kirby and D.H. Laidlaw and
              G.E. Karniadakis and A. van Dam and J. Elion",
  title =     "Immersive Virtual Reality for Visualizing Flow
              Through an Artery",
  booktitle = "Proceedings of IEEE Visualization 2000",
  pages =     "457--460",
  year =      "2000",
  month =     "October",
  location =  "Salt Lake City, UT",
}

@Article{SCI:For92a,
  author =    "D. Forslunk and P. Hinker and C.D. Hansen and
              W.St. John and S. Tenbrink and J. Brewton",
  title =     "High-speed Networks, Visualization and Massive
              Parallelism in the Advanced Computing Laboratory",

  journal =   "Computing Systems in Engineering",
  volume =    "3",
  number =    "1-4",
  year =      "1992",
}

@Article{SCI:Fos2005a,
  author =    "M. Foskey and B. Davis and L. Goyal and S. Chang
              and E. Chaney and N. Strehl and S. Tomei and J.
              Rosenman and S. Joshi",
  title =     "Large Deformation Three-Dimensional Image
              Registration in Image-Guided Radiation Therapy",
  journal =   "Phys Med Biol",
  volume =    "50",
  number =    "24",
  pages =     "5869--5892",
  year =      "2005",
  month =     "December 21",
  url =       "http://www.sci.utah.edu/publications/foskey05/Foskey05_submission.pdf",
}

@Article{SCI:Fos2008a,
  author =    "N.L. Foster and A.Y. Wang and T. Tasdizen and P.T.
              Fletcher and J.M. Hoffman and R.A. Koeppe",
  title =     "Realizing the Potential of Positron Emission
              Tomography with 18F-Fluorodeoxyglucose to Improve
              the Treatment of Alzheimer",
  journal =   "Journal of the Alzheimer",
  volume =    "4",
  number =    "1, Suppl. 1",
  pages =     "S29--36",
  year =      "2008",
  pmid =      "18631997",
  keywords =  "PET, alzheimers",
}

@InProceedings{SCI:Fou2005a,
  author =    "N. Fout and H. Akiba and K-L. Ma and A.E. Lefohn
              and J.M. Kniss",
  title =     "High-Quality Rendering of Compressed Volume Data
              Formats",
  booktitle = "Proceedings of The Joint EUROGRAPHICS-IEEE VGTC
              Symposium on Visualization 2005",
  year =      "2005",
  keywords =  "scalar field methods, volume rendering",
  url =       "http://www.sci.utah.edu/publications/fout05/fout_eurovis05.pdf",
}

@Article{SCI:Fow2011a,
  author =    "C. Fowlkes and K. Eckenrode and M. Bragdon and M.
              Meyer and Z. Wunderlich and L. Simirenko and C.
              Luengo and S. Keranen and C. Henriquez and D.
              Knowles and M. Biggin and M. Eisen and A. DePace",

  title =     "A Conservered Developmental Patterning Network
              Produces Quantitatively Different Output in
              Multiple Species of Drosophila",
  journal =   "PLoS Genetics",
  volume =    "7",
  number =    "10",
  pages =     "17 pages",
  year =      "2011",
  month =     "October",
  url =       "http://www.sci.utah.edu/publications/fowlkes11/Fowlkes_PLoS2011.pdf",
}

@Article{SCI:Fra1993a,
  author =    "E.P. France and J.A. Weiss and L.E. Paulos",
  title =     "Allograft Ligament Reconstruction: Biomechanical
              Issues and Testing",
  journal =   "Sports Medicine and Arthroscopy Review",
  volume =    "1",
  pages =     "47--60",
  year =      "1993",
}

@InProceedings{SCI:Fre2002a,
  author =    "J. Freire and J. Haritsa and M. Ramanath and P.
              Roy and J. Simeon",
  title =     "StatiX: Making XML Count",
  booktitle = "Proceedings of the 2002 ACM SIGMOD International
              Conference on Management of Data",
  pages =     "181--191",
  year =      "2002",
  keywords =  "xml",
  url =       "http://www.sci.utah.edu/publications/freire02/Freire_SIGMOD2002.pdf",
}

@Article{SCI:Fre2003a,
  author =    "J. Freire and J. Simeon",
  title =     "Adaptive XML Shredding: Architecture,
              Implementation, and Challenges",
  journal =   "Efficiency and Effectiveness of XML Tools and
              Techniques and Data Integration over the Web",
  volume =    "2590/2008",
  pages =     "104--116",
  year =      "2003",
  series =    "Lecture Notes in Computer Science (LNCS)",
  url =       "http://www.sci.utah.edu/publications/freire03/Freire_LNCS2003.pdf",
}

@Article{SCI:Fre2004a,
  author =    "J. Freire and M. Benedikt",
  title =     "Managing XML Data: An Abridged Overview",
  journal =   "Computing in Science and Engineering",
  volume =    "6",
  number =    "4",
  pages =     "12--19",
  year =      "2004",
  publisher = "IEEE Computer Society",
  issn =      "1521-9615",
  keywords =  "xml",
}

@InProceedings{SCI:Fre2004b,
  author =    "J. Freire and M. Ramanath and L. Zhang",
  title =     "A Flexible Infrastructure for Gathering XML
              Statistics and Estimating Query Cardinality",
  booktitle = "Proceedings of the 20th International Conference
              on Data Engineering",
  pages =     "857",
  year =      "2004",
  isbn =      "0-7695-2065-0",
  url =       "http://www.sci.utah.edu/publications/freire04/Freire_ICDE2004.pdf",
}

@Article{SCI:Fre2006a,
  author =    "J. Freire and C.T. Silva and S.P. Callahan and E.
              Santos and C.E. Scheidegger and H.T. Vo",
  title =     "Managing Rapidly-Evolving Scientific Workflows",
  booktitle = "Proceedings of The 2006 International Provenance
              and Annotation Workshop",
  journal =   "Provenance and Annotation of Data",
  pages =     "10--18",
  year =      "2006",
  series =    "Lecture Notes in Computer Science (LNCS)",
  keywords =  "scirun, pse pses problem solving envoronment,
              vistrails, provenance",
  url =       "http://www.sci.utah.edu/publications/freire06/ipaw2006.pdf",
}

@InProceedings{SCI:Fre2008a,
  author =    "J. Freire and C.T. Silva",
  title =     "Towards Enabling Social Analysis of Scientific
              Data",
  booktitle = "Proceedings of CHI Social Data Analysis Workshop
              2008",
  pages =     "(to appear)",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/freire08/chi2008.pdf",
}

@Article{SCI:Fre2008b,
  author =    "J. Freire and D. Koop and C.T. Silva",
  title =     "Provenance for Computational Tasks: A Survey",
  journal =   "Computing in Science and Engineering",
  volume =    "10",
  number =    "3",
  pages =     "11--21",
  year =      "2008",
  keywords =  "vistrails, provenance, workflow management",
  url =       "http://www.sci.utah.edu/publications/freire08/cise2008a.pdf",
}

@Article{SCI:Fre2009a,
  author =    "J. Freire",
  title =     "Provenance Management: Challenges and
              Opportunities",
  journal =   "Datenbanksysteme in Business, Technologie und Web
              (BTW)",
  pages =     "4",
  year =      "2009",
}

@InProceedings{SCI:Fri2007a,
  author =    "H. Friedrich and I. Wald and P. Slusallek",
  title =     "Interactive Iso-Surface Ray Tracing of Massive
              Volumetric Data Sets",
  booktitle = "Proceedings of the 2007 Eurographics Symposium on
              Parallel Graphics and Visualization",
  pages =     "109--116",
  year =      "2007",
  keywords =  "volume rendering, parallel visualization,
              interactive rt distributed interactive ray tracing
              dirt, rtcenter, large dataset visualization",
  url =       "http://www.sci.utah.edu/publications/friedrich07/async.pdf",
}

@Article{SCI:Fu2011a,
  author =    "Z. Fu and W.-K. Jeong and Y. Pan and R.M. Kirby
              and R.T. Whitaker",
  title =     "A fast iterative method for solving the Eikonal
              equation on triangulated surfaces",
  journal =   "SIAM Journal of Scientific Computing",
  volume =    "33",
  number =    "5",
  pages =     "2468--2488",
  year =      "2011",
  keywords =  "NETL",
  url =       "http://www.sci.utah.edu/publications/fu11/Fu_SIAM-JSC2011.pdf",
}

@InProceedings{SCI:Fuc2008a,
  author =    "M. Fuchs and S. Gerber",
  title =     "Variational Shape Detection in Microscope Images
              Based on Joint Shape and Image Feature
              Statistics",
  booktitle = "Proceedings of the {IEEE} Computer Society
              Workshop on Mathematical Methods in Biomedical
              Image Analysis ({MMBIA} 2008)",
  pages =     "(accepted)",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/fuchs08/Fuchs_MMBIA08.pdf",
}

@Misc{SCI:Fusion,
  year =      "2011",
  note =      "FusionView: Problem Solving Environment for MHD
              Visualization. Scientific Computing and Imaging
              Institute (SCI), Download from:
              http://www.scirun.org",
  keywords =  "fusion",
}

@Article{SCI:Gao2008a,
  author =    "W. Gao and Y. Chen and G. Gerig and J.K. Smith and
              V. Jewells and J.H. Gilmore and W. Lin",
  title =     "Temporal and Spatial Development of Axonal
              Maturation and Myelination of White Matter in the
              Developing Brain",
  journal =   "American Journal of Neuroradiology",
  pages =     "(published online)",
  year =      "2008",
  month =     "Nov 11",
  doi =       "10.3174/ajnr.A1363",
  keywords =  "ucnia",
}

@Article{SCI:Gao2009a,
  author =    "W. Gao and W. Lin and Y. Chen and G. Gerig and
              J.K. Smith and V. Jewells and J.H. Gilmore",
  title =     "Temporal and Spatial Development of Axonal
              Maturation and Myelination of White Matter in the
              Developing Brain",
  journal =   "American Journal of Neuroradiology (AJNR)",
  volume =    "30",
  pages =     "290--296",
  year =      "2009",
  pmid =      "19001533",
  url =       "http://www.sci.utah.edu/publications/gao09/Gao_AJNR2009.pdf",
}

@Article{SCI:Gar2001a,
  author =    "J.C. Gardiner and J.A. Weiss and T.D. Rosenberg",
  title =     "Strain in the Human Medial Collateral Ligament
              During Valgus Loading",
  journal =   "Clinical Orthopaedics and Related Research",
  volume =    "391",
  pages =     "266--274",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/gardiner01/mclstrain_clinorthop.pdf",
}

@Article{SCI:Gar2001b,
  author =    "J.C. Gardiner and J.A. Weiss",
  title =     "Simple Shear Testing of Parallel-Fibered Planar
              Soft Tissues",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "123",
  pages =     "1--5",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/gardiner01/JBMEshear.pdf",
}

@Article{SCI:Gar2003a,
  author =    "J.C. Gardiner and J.A. Weiss",
  title =     "Subject-Specific Finite Element Analysis of the
              Human Medial Collateral Ligament During Valgus Knee
              Loading",
  journal =   "Journal of Orthopaedic Research",
  volume =    "21",
  pages =     "1098--1106",
  year =      "2003",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              finite elements, forward problems inverse problems
              forward simulation inverse solutions, computational
              biomechanics, ip image processing signal
              processing, segmentation",
  url =       "http://www.sci.utah.edu/publications/gardiner03/gardiner_jor_2003.pdf",
}

@InProceedings{SCI:Gar2004a,
  author =    "C. Garth and X. Tricoche and G. Scheuermann",
  title =     "Tracking of Vector Field Singularities in
              Unstructured 3D Time-Dependent Datasets",
  booktitle = c-VIS2004,
  pages =     "329--336",
  year =      "2004",
  keywords =  "cfd computational fluid dynamics, vector field
              methods, Poincare index, time dependent topology,
              poincare index, ncrr",
  url =       "http://www.sci.utah.edu/publications/garth04/tracking3d.pdf",
}

@InProceedings{SCI:Gar2004b,
  author =    "C. Garth and X. Tricoche and T. Salzbrunn and T.
              Bobach and G. Scheuermann",
  title =     "Surface Techniques for Vortex Visualization",
  booktitle = "Proceedings of Joint Eurographics - {IEEE} {TCVG}
              Symposium on Visualization",
  pages =     "155--164",
  year =      "2004",
  month =     "May",
  keywords =  "cfd computational fluid dynamics, computational
              mechanics, fluid structure problems, aerodynamics,
              ncrr",
  url =       "http://www.sci.utah.edu/publications/garth04/vissym04.pdf",
}

@InProceedings{SCI:Gar2006a,
  author =    "C. Garth and B. Laramee and X. Tricoche and H.
              Hauser and J. Schneider",
  title =     "Extraction and Visualization of Swirl and Tumble
              Motion from Engine Simulation Data",
  booktitle = "Proceedings of TopoInVis, Seminar on
              Topology-based Methods in Visualization",
  pages =     "(to appear)",
  year =      "2006",
}

@InProceedings{SCI:Gar2007a,
  author =    "C. Garth and G. Li and X. Tricoche and C.D. Hansen
              and H. Hagen",
  title =     "Visualization of Coherent Structures in Transient
              2D Flows",
  booktitle = "Proceedings of the 2007 Workshop on Topology-Based
              Method in Visualization (TopoInVis)",
  year =      "2007",
  month =     "March",
  location =  "Grimma, Germany",
  keywords =  "csafe c-safe",
  url =       "http://www.sci.utah.edu/publications/garth07/topoinvis07.pdf",
}

@InProceedings{SCI:Gar2007b,
  author =    "C. Garth and F. Gerhardt and X. Tricoche and H.
              Hagen",
  title =     "Efficient Computation and Visualization of
              Coherent Structures in Fluid Flow Applications",
  booktitle = "Proceeding of IEEE Visualization 2007",
  pages =     "1464--1471",
  year =      "2007",
  keywords =  "vacet, cfd computational fluid dynamics,
              aerodynamics",
  url =       "http://www.sci.utah.edu/publications/garth07/garth-vis07.pdf",
}

@InProceedings{SCI:Gen2005a,
  author =    "S.E. Geneser and S. Choe and R.M. Kirby and R.S.
              MacLeod",
  title =     "Influence of Stochastic Organ Conductivity in 2D
              ECG Forward Modeling: A Stochastic Finite Element
              Study",
  booktitle = c-BEMNFSI2005,
  pages =     "5528--5531",
  year =      "2005",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, forward simulation,
              cardiac heart, ncrr",
  url =       "http://www.sci.utah.edu/publications/geneser05/Geneser_Stochastic_FE_study.pdf",
}

@Article{SCI:Gen2007a,
  author =    "S.E. Geneser and R.M. Kirby and D. Xiu and F.B.
              Sachse",
  title =     "Stochastic Markovian Modeling of Electrophysiology
              of Ion Channels: Reconstruction of Standard
              Deviations in Macroscopic Currents",
  journal =   "Journal of Theoretical Biology",
  volume =    "245",
  number =    "4",
  pages =     "627--637",
  year =      "2007",
  keywords =  "computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/geneser07/Kirby-20.pdf",
}

@Article{SCI:Gen2008a,
  author =    "S.E. Geneser and R.M. Kirby and R.S. MacLeod",
  title =     "Application of Stochastic Finite Element Methods
              to Study the Sensitivity of ECG Forward Modeling to
              Organ Conductivity",
  journal =   "{IEEE} Transations on Biomedical Engineering",
  volume =    "55",
  number =    "1",
  pages =     "31--40",
  year =      "2008",
  month =     "January",
  url =       "http://www.sci.utah.edu/publications/geneser08/geneser08-ieee-bme.pdf",
}

@Article{SCI:Gen2009a,
  author =    "S.E. Geneser and R.M. Kirby and B. Wang and B.
              Salter and S. Joshi",
  title =     "Incorporating patient breathing variability into a
              stochastic model of dose deposition for
              stereotactic body radiation therapy",
  journal =   "Information Processing in Medical Imaging",
  volume =    "5636",
  pages =     "688--700",
  year =      "2009",
  series =    "Lecture Notes in Computer Science LNCS",
  pmid =      "19694304",
  url =       "http://www.sci.utah.edu/publications/geneser09/Geneser_LNCS2009.pdf",
}

@Article{SCI:Gen2010a,
  author =    "S.E. Geneser and J.D. Hinkle and R.M. Kirby and B.
              Wang and B. Salter and S. Joshi",
  title =     "Quantifying Variability in Radiation Dose Due to
              Respiratory-Induced Tumor Motion",
  journal =   "Medical Image Analysis",
  volume =    "15",
  number =    "4",
  pages =     "640--649",
  year =      "2010",
  doi =       "10.1016/j.media.2010.07.003",
  url =       "http://www.sci.utah.edu/publications/geneser10/MEDIA-D-09-00276_abstract.pdf",
}

@Article{SCI:Gen2011a,
  author =    "S.E. Geneser and J.D. Hinkle and R.M. Kirby and B.
              Wang and B. Salter and S. Joshi",
  title =     "Quantifying variability in radiation dose due to
              respiratory-induced tumor motion",
  journal =   "Medical Image Analysis",
  volume =    "15",
  number =    "4",
  pages =     "640--649",
  year =      "2011",
  doi =       "10.1016/j.media.2010.07.003",
  url =       "http://www.sci.utah.edu/publications/geneser11/Geneser_MIA2011.pdf",
}

@InProceedings{SCI:Ger2000a,
  author =    "J.D. de St. Germain and J. McCorquodale and S.G.
              Parker and C.R. Johnson",
  title =     "Uintah: A Massively Parallel Problem Solving
              Environment",
  booktitle = "Ninth {IEEE} International Symposium on High
              Performance and Distributed Computing",
  pages =     "33--41",
  year =      "2000",
  publisher = "{IEEE}, Piscataway, NJ",
  month =     "Nov",
  keywords =  "scirun, uintah, csafe",
  url =       "http://www.sci.utah.edu/publications/dav00/uintah-hpdc00.pdf",
}

@InProceedings{SCI:Ger2002a,
  author =    "J.D. de St. Germain and A. Morris and S.G. Parker
              and A.D. Malony and S. Shende",
  title =     "Integrating Performance Analysis in the Uintah
              Software Development Cycle",
  booktitle = c-ISHPC2002,
  pages =     "190--206",
  year =      "2002",
  month =     "May 15-17",
  keywords =  "scirun, uintah, csafe, csafe c-safe, problem
              solving environments, pse",
  url =       "http://www.sci.utah.edu/publications/dav02/ishpc2002.pdf",
}

@InProceedings{SCI:Ger2003a,
  author =    "J.D. de St. Germain and S.G. Parker",
  title =     "Software Integration in an Academic Environment",
  booktitle = "Software Quality Forum (SQF)",
  pages =     "(published on CD)",
  year =      "2003",
  month =     "March",
  location =  "Arlington, Virginia",
  keywords =  "SCIRun, scirun, biopse, uintah, scirun fusion,
              scirun insight, csafe c-safe, PSE, software
              integration, problem solving environments, pse",
}

@Article{SCI:Ger2003b,
  author =    "J.D. de St. Germain and A. Morris and S.G. Parker
              and A.D. Malony and S. Shende",
  title =     "Performance Analysis Integration in the Uintah
              Software Development Cycle",
  journal =   "International Journal of Parallel Programming",
  volume =    "31",
  number =    "1",
  pages =     "35--53",
  year =      "2003",
  keywords =  "uintah",
  url =       "http://www.sci.utah.edu/publications/dav03/ijpp03.pdf",
}

@InProceedings{SCI:Ger2006a,
  author =    "G. Gerig and B. Davis and P. Lorenzen and S. Xu
              and M. Jomier and J. Piven and S. Joshi",
  title =     "Computational Anatomy to Assess Longitudinal
              Trajectory of Brain Growth",
  booktitle = "Proceedings of The Third International Symposium
              on 3D Data Processing, Visualization, and
              Transmission",
  pages =     "1041--1047",
  year =      "2006",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/gerig06/CompAnat-3dpvt-Gerig-final.pdf",
}

@InProceedings{SCI:Ger2006b,
  author =    "G. Gerig and S. Joshi and P.T. Fletcher and K.
              Gorczowski and S. Xu and S.M. Pizer and M.
              Styner",
  title =     "Statistics of Populations of Images and its
              Embedded Objects: Driving Applications in
              Neuroimaging",
  booktitle = "Proceedings of IEEE International Symposium on
              Biomedical Imaging (ISBI)",
  pages =     "1120--1123",
  year =      "2006",
  month =     "April",
  url =       "http://www.sci.utah.edu/publications/gerig06/ISBI06_Gerig.pdf",
}

@InProceedings{SCI:Ger2007a,
  author =    "S. Gerber and T. Tasdizen and R.T. Whitaker",
  title =     "Robust Non-linear Dimensionality Reduction using
              Successive 1-Dimensional Laplacian Eigenmaps",
  booktitle = "Proceedings of the 2007 International Conference
              on Machine Learning (ICML)",
  pages =     "281--288",
  year =      "2007",
  keywords =  "crcns",
  url =       "http://www.sci.utah.edu/publications/gerber07/Gerber_ICML2007.pdf",
}

@InProceedings{SCI:Ger2009a,
  author =    "S. Gerber and T. Tasdizen and S. Joshi and R.T.
              Whitaker",
  title =     "On the Manifold Structure of the Space of Brain
              Images",
  booktitle = "Proceedings of the 2009 International Conference
              on Medical Image Computing and Computer Assisted
              Intervention (MICCAI 2009)",
  number =    "12 (pt. 1)",
  pages =     "305--312",
  year =      "2009",
  pmid =      "20426001",
  url =       "http://www.sci.utah.edu/publications/gerber09/brainmanifold.pdf",
}

@InProceedings{SCI:Ger2009b,
  author =    "S. Gerber and T. Tasdizen and R.T. Whitaker",
  title =     "Dimensionality Reduction and Principal Surfaces
              via Kernel Map Manifolds",
  booktitle = "Proceedings of the 2009 International Conference
              on Computer Vison (ICCV 2009)",
  pages =     "(to appear)",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/gerber09/kmm_iccv09.pdf",
}

@Article{SCI:Ger2010a,
  author =    "S. Gerber and T. Tasdizen and P.T. Fletcher and S.
              Joshi and R.T. Whitaker and the Alzheimers Disease
              Neuroimaging Initiative (ADNI)",
  title =     "Manifold modeling for brain population analysis",
  journal =   "Medical Image Analysis",
  volume =    "14",
  number =    "5",
  pages =     "643--653",
  year =      "2010",
  series =    "Special Issue on the 12th International Conference
              on Medical Image Computing and Computer Assisted
              Intervention (MICCAI) 2009",
  note =      "Awarded MICCAI 2010, Best of the Journal Issue
              Award",
  issn =      "1361-8415",
  doi =       "10.1016/j.media.2010.05.008",
  pmid =      "20579930",
  keywords =  "Neurological image analysis; Population analysis;
              Brain MRI; Manifold learning; Computer aided
              clinical diagnosis",
  url =       "http://www.sci.utah.edu/publications/gerber10/Gerber_MICCAI2010.pdf",
}

@InProceedings{SCI:Ger2010b,
  author =    "S. Gerber and P.-T. Bremer and V. Pascucci and
              R.T. Whitaker",
  title =     "Visual Exploration of High Dimensional Scalar
              Functions",
  booktitle = "Proceedings of Visualization 2010",
  volume =    "16",
  number =    "6",
  pages =     "1271--1280",
  year =      "2010",
  series =    "IEEE Transactions on Visualization and Computer
              Graphics",
  doi =       "10.1109/TVCG.2010.213",
  pmid =      "20975167",
  url =       "http://www.sci.utah.edu/publications/gerber10/Gerber_hdviz2010.pdf",
}

@Article{SCI:Ger2011a,
  author =    "S. Gerber and K. Potter",
  title =     "Data Analysis with the Morse-Smale Complex: The
              msr Package for R",
  journal =   "Journal of Statistical Software",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/gerber11/Gerber_JSS2011.pdf",
}

@Article{SCI:Ger2011b,
  author =    "S. Gerber and O. Ruebel and P.-T. Bremer and V.
              Pascucci and R.T. Whitaker",
  title =     "Morse-Smale Regression",
  journal =   "Journal of Computational and Graphical
              Statistics",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/gerber11/Gerber_JCGS2011.pdf",
  url =       "http://www.sci.utah.edu/publications/gerber11/Gerber_JCGS2011_supl.tgz",
}

@Article{SCI:Ger2011c,
  author =    "G. Gerig and I. Oguz and S. Gouttard and J. Lee
              and H. An and W. Lin and M. McMurray and K. Grewen
              and J. Johns and M.A. Styner",
  title =     "Synergy of image analysis for animal and human
              neuroimaging supports translational research on
              drug abuse",
  journal =   "Frontiers in Child and Neurodevelopmental
              Psychiatry",
  volume =    "2",
  pages =     "9 pages",
  year =      "2011",
  editor =    "Linda Mayes",
  issn =      "1664-0640",
  doi =       "10.3389/fpsyt.2011.00053",
  url =       "http://www.sci.utah.edu/publications/gerig11/Gerig_FCNP2011.pdf",
}

@InProceedings{SCI:Gha93a,
  author =    "P.B. Gharpure and C.R. Johnson",
  title =     "A 3D Cellular Automata Model of the Heart",
  booktitle = "{IEEE} Engineering in Medicine and Biology Society
              15th Annual International Conference",
  pages =     "752--753",
  year =      "1993",
  publisher = "{IEEE} Press",
  keywords =  "scalar field methods, cardiac heart",
}

@TechReport{SCI:Gha95,
  author =    "P. Gharpure and C.R. Johnson",
  title =     "A Cellular Automaton Model of Electrical
              Activation in Canine Ventricles: A Validation
              Study",
  number =    "UUSCI-1995-002",
  year =      "1995",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-1995-002.pdf",
}

@Article{SCI:Gho2000a,
  author =    "S. Ghorai and A.S. Tomlin and M. Berzins",
  title =     "Resolution of pollutant concentrations in the
              boundary layer using a fully 3-D adaptive gridding
              technique",
  journal =   "Atmospheric Environment",
  volume =    "34",
  number =    "18",
  pages =     "2851-2863",
  year =      "2000",
  url =       "http://www.sci.utah.edu/publications/ghorai00/atm2000paper.pdf",
}

@InProceedings{SCI:Gho2004a,
  author =    "A. Ghodrati and D.H. Brooks and R.S. MacLeod",
  title =     "On Selecting and Using Reduced Sets of Leads for
              Electrocardiographic Imaging Using
              Reconstruction-Quality Criteria",
  booktitle = "Proceedings of The SIAM Conference on Imaging
              Science 2004",
  year =      "2004",
  month =     "May",
  location =  "Salt Lake City, UT",
  note =      "abstract.",
  keywords =  "ncrr",
}

@InProceedings{SCI:Gho2004b,
  author =    "A. Ghodrati and F. Calderero and D.H. Brooks and
              G. Tadmor and R.S. MacLeod",
  title =     "A Level Sets Algorithm for the Inverse Problem of
              Electrocardiography",
  booktitle = "Proceedings of the Asilomar Conf. on Sig. and
              Sys.",
  volume =    "2",
  pages =     "1590--1594",
  year =      "2004",
  month =     "November",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr",
}

@InProceedings{SCI:Gho2005a,
  author =    "A. Ghodrati and D.H. Brooks and G. Tadmor and B.B.
              Punske and R.S. MacLeod",
  title =     "Wavefront-based Inverse Electrocardiography using
              an Evolving Curve State Vector and Phenomenological
              Propagation and Potential Models",
  booktitle = c-BEMNFSI2005,
  volume =    "7",
  number =    "2",
  pages =     "210--213",
  year =      "2005",
  keywords =  "cardiac heart, ncrr, cibc",
}

@Article{SCI:Gho2006a,
  author =    "A. Ghodrati and D.H. Brooks and G. Tadmor and R.S.
              MacLeod",
  title =     "Wavefront-based Models for Inverse
              Electrocardiography",
  journal =   j-BME,
  volume =    "53",
  number =    "9",
  pages =     "1821--1831",
  year =      "2006",
  doi =       "10.1109/TBME.2006.878117",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr, cibc simulation
              math modeling",
  url =       "http://www.sci.utah.edu/publications/ghodrati06/Ghodrati_TBE2006.pdf",
}

@Article{SCI:Gho2006b,
  author =    "A. Ghodrati and D.H. Brooks and G. Tadmor and R.S.
              MacLeod",
  title =     "Lead Selection for Inverse Electrocardiography",
  journal =   j-BME,
  pages =     "in press",
  year =      "2006",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr",
}

@Conference{SCI:Gho2006c,
  author =    "A. Ghodrati and A. Keely and G. Tadmor and R.S.
              MacLeod and D.H. Brooks",
  title =     "A Wavefront-Based Constraint for Potential Surface
              Solutions in Inverse Electrocardiography",
  booktitle = "Proceedings of the 26th Annual International
              Conference of the IEEE EMBS",
  volume =    "53",
  number =    "9",
  pages =     "1821--1831",
  year =      "2006",
  address =   "New York, NY, USA",
  month =     "August",
  doi =       "10.1109/IEMBS.2006.260373",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, simulation math
              modeling, bioelectric fields, ncrr, cibc",
  url =       "http://www.sci.utah.edu/publications/ghodrati06/Ghodrati_EMBS2006.pdf",
}

@Conference{SCI:Gho2006d,
  author =    "A. Ghodrati and D.H Brooks and G. Tadmor and R.S.
              MacLeod",
  title =     "A Threshold-Based Method for Inverse Solutions to
              Reconstruct Complex Obstacles, with Application to
              the Inverse Problem of Electrocardiography",
  booktitle = "SIAM Conference on Imaging Science",
  year =      "2006",
  address =   "Minneapolis, MN, USA",
  month =     "May",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr, simulation math
              modeling, bioelectric fields",
}

@Article{SCI:Gho2007a,
  author =    "A. Ghodrati and D.H. Brooks and R.S. MacLeod",
  title =     "Methods of Solving Reduced Lead Systems for
              Inverse Electrocardiography",
  journal =   "{IEEE} Trans Biomed Eng",
  volume =    "54",
  number =    "2",
  pages =     "339--343",
  year =      "2007",
  month =     "February",
  pmid =      "17278592",
  keywords =  "ncrr, cibc",
  url =       "http://www.sci.utah.edu/publications/ghodrati07/Ghodrati_TBE2007.pdf",
}

@Article{SCI:Gil2006a,
  author =    "J.H. Gilmore and W. Lin and G. Gerig",
  title =     "IMAGES IN NEUROSCIENCE: Fetal and Neonatal Brain
              Development",
  journal =   "Am J Psychiatry",
  volume =    "163",
  pages =     "2046",
  year =      "2006",
  month =     "December",
}

@Article{SCI:Gil2007a,
  author =    "J.H. Gilmore and W. Lin and I. Corouge and Y.S.
              Vetsa and J.K. Smith and C. Kang and H. Gu and R.M.
              Hamer and J.A. Lieberman and G. Gerig",
  title =     "Early Postnatal Development of Corpus Callosum and
              Corticospinal White Matter Assessed with
              Quantitative Tractography",
  journal =   "American Journal of Neuroradiology",
  volume =    "28",
  number =    "9",
  pages =     "1789--1795",
  year =      "2007",
  month =     "October",
  url =       "http://www.sci.utah.edu/publications/gilmore07/Gilmore_AJNR_Oct2007.pdf",
}

@Article{SCI:Gil2007b,
  author =    "J.H. Gilmore and W. Lin and M.W. Prastawa and C.B.
              Looney and Y.S.K. Vetsa and R.C. Knickmeyer and
              D.D. Evans and J.K. Smith and R.M. Hamer and J.A.
              Lieberman and G. Gerig",
  title =     "Regional Gray Matter Growth, Sexual Dimorphism,
              and Cerebral Asymmetry in the Neonatal Brain",
  journal =   "Journal of Neuroscience",
  volume =    "27",
  number =    "6",
  pages =     "1255--1260",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/gilmore07/JN-12-1-06.pdf",
}

@InProceedings{SCI:Gil2007c,
  author =    "J.H. Gilmore and L. Smith and C. Kang and R. Hamer
              and H. Wolfe and B. Hertzberg and J.K. Smith and N.
              Chescheir and W. Lin and G. Gerig",
  title =     "Neonatal Brain Structure in Children with Prenatal
              Isolated Mild Ventriculomegaly",
  booktitle = "Proceedings American Conference of
              Neuropharmacology (ACNP) 2007",
  year =      "2007",
  location =  "Boca Raton, FL",
  note =      "abstract.",
}

@Article{SCI:Gil2007d,
  author =    "J.H. Gilmore and W. Lin and M.W. Prastawa and C.B.
              Looney and Y.S.K. Vetsa and R.C. Knickmeyer and
              D.D. Evans and J.K. Smith and R.M. Hamer and J.A.
              Lieberman and G. Gerig",
  title =     "Regional Gray Matter Growth, Sexual Dimorphism,
              and Cerebral Asymmetry in the Neonatal Brain",
  journal =   "Journal of Neuroscience",
  volume =    "27",
  number =    "6",
  pages =     "1255--1260",
  year =      "2007",
  keywords =  "ucnia",
}

@Article{SCI:Gil2008a,
  author =    "J.H. Gilmore and L. Smith and H. Wolfe and B.
              Hertzberg and J.K. Smith and N. Chescheir and D.
              Evans and C. Kang and R.M. Hamer and W. Lin and G.
              Gerig",
  title =     "Prenatal Mild Ventriculomegaly Predicts Abnormal
              Development of the Neonatal Brain",
  journal =   "Biological Psychiatry",
  volume =    "64",
  number =    "12",
  pages =     "1069-1076",
  year =      "2008",
  month =     "Dec",
  pmid =      "18835482",
  keywords =  "brain development, ventriculomegaly, ucnia",
  url =       "http://www.sci.utah.edu/publications/gilmore08/Prenatal_Ventriculomegaly.pdf",
}

@Article{SCI:Gil2010a,
  author =    "J.H. Gilmore and C. Kang and D.D. Evans and H.M.
              Wolfe and M.D. Smith and J.A. Lieberman and W. Lin
              and R.M. Hamer and M. Styner and G. Gerig",
  title =     "Prenatal and Neonatal Brain Structure and White
              Matter Maturation in Children at High Risk for
              Schizophrenia",
  journal =   "American Journal of Psychiatry",
  volume =    "167",
  number =    "9",
  pages =     "1083--1091",
  year =      "2010",
  month =     "September",
  note =      "Epub 2010 Jun 1",
  pmid =      "20516153",
  url =       "http://www.sci.utah.edu/publications/gilmore10/Gilmore_AJP2010.pdf",
}

@Article{SCI:Gil2010b,
  author =    "J.H. Gilmore and J.E. Schmitt and R.C. Knickmeyer
              and J.K. Smith and W. Lin and M. Styner and G.
              Gerig and M.C. Neale",
  title =     "Genetic and environmental contributions to
              neonatal brain structure: A twin study",
  journal =   "Human Brain Mapping",
  volume =    "31",
  number =    "8",
  pages =     "1174--1182",
  year =      "2010",
  note =      "ePub 8 Jan 2010",
  pmid =      "20063301",
  url =       "http://www.sci.utah.edu/publications/gilmore10/Gilmore_HBM2010.pdf",
}

@TechReport{SCI:Git94a,
  author =    "C.S. Gitlin and C.R. Johnson",
  title =     "Techniques for Visualizing 3D Unstructured
              Meshes",
  number =    "UUCS-94-018",
  year =      "1994",
  institution = "University of Utah",
  type =      "School of Computing Technical Report",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/gitlin94/gitlin95_2.ps",
  url =       "http://www.sci.utah.edu/publications/gitlin94/gitlin95_2.ps.Z",
}

@InProceedings{SCI:Git96,
  author =    "C.S. Gitlin and C.R. Johnson",
  title =     "MeshView: A tool for exploring 3D unstructured
              tetrahedral meshes",
  booktitle = "5th International Meshing Roundtable",
  pages =     "333--345",
  year =      "1996",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/gitlin96/mesh96.ps.Z",
}

@InProceedings{SCI:Goo2001a,
  author =    "C.E. Goodyer and R. Fairlie and M. Berzins and
              L.E. Scales",
  title =     "Adaptive Techniques for Elastohydrodynamic
              Lubrication Solvers",
  booktitle = "Tribology Research: From Model Experiment to
              Industrial Problem, Proceedings of the 27th
              Leeds-Lyon Symposium on Tribology",
  year =      "2001",
  editor =    "G. Dalmaz et al.",
  publisher = "Elsevier",
  keywords =  "EHL, , ehl",
  url =       "http://www.sci.utah.edu/publications/goodyer01/LeedsLyon2000.pdf",
}

@InProceedings{SCI:Goo2001b,
  author =    "C.E. Goodyer and R. Fairlie and M. Berzins and
              L.E. Scales",
  title =     "Adaptive Mesh Methods for Elastohydrodynamic
              Lubrication",
  booktitle = "ECCOMAS CFD 2001: Computational Fluid Dynamics
              Conference Proceedings",
  year =      "2001",
  publisher = "Institute of Mathematics and its Applications",
  isbn =      "0-905-091-12-4",
  keywords =  "EHL",
  url =       "http://www.sci.utah.edu/publications/goodyer01/ECCOMAS_Goodyer01.pdf",
}

@InProceedings{SCI:Goo2002a,
  author =    "C.E. Goodyer and M. Berzins",
  title =     "Eclipse and Ellipse: {PSE}s for {EHL} Solutions
              using {IRIS} Explorer and {SCIR}un",
  booktitle = c-ICCS2002,
  volume =    "2329",
  pages =     "523--532",
  year =      "2002",
  editor =    "P.M.A. Sloot and C.J.K. Tan and J.J. Dongarra and
              A.G. Hoekstra",
  publisher = "Springer Berlin",
  location =  "Amsterdam, The Netherlands",
  url =       "http://www.sci.utah.edu/publications/goodyer02/2002EclipseEllipse.pdf",
}

@InProceedings{SCI:Goo2002b,
  author =    "C.E. Goodyer and J. Wood and M. Berzins",
  title =     "A Parallel Grid Based {PSE} for {EHL} Problems",
  booktitle = c-PARA2002,
  volume =    "2367",
  pages =     "521--530",
  year =      "2002",
  editor =    "J. Fagerholm and J. Haatja and J. Jarvinen and M.
              Lyly and P. Raback and V. Savolainen",
  publisher = "Springer Lecture Notes in Computer Science",
  location =  "Espoo, Finland",
  keywords =  "pse grid computing",
  url =       "http://www.sci.utah.edu/publications/goodyer02/CEGJWMB02.pdf",
}

@InProceedings{SCI:Goo2003a,
  author =    "C.E. Goodyer and M. Berzins and P.K. Jimack and
              L.E. Scales",
  title =     "Grid-Based Numerical Optimisation in a Problem
              Solving Environment",
  booktitle = "Proceedings of Second {UK} {E}-Science All-Hands
              Meeting",
  pages =     "854--861",
  year =      "2003",
  editor =    "S.J. Cox",
  location =  "Nottingham, {UK}",
  isbn =      "1-904425-11-9",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, pse grid
              computing, scientific computing, numerics",
  url =       "http://www.sci.utah.edu/publications/goodyer03/GBJS03.pdf",
}

@InProceedings{SCI:Goo2004a,
  author =    "C.E. Goodyer and R. Fairlie and D.E. Hart and M.
              Berzins and L.E. Scales",
  title =     "Calculation of Friction in Steady-State and
              Transient EHL Simulations Transient Processes in
              Tribology",
  booktitle = "Transient Processes in Tribology: Proceeding of
              the 31st Leeds-Lyon Symposium on Tribology",
  pages =     "579--590",
  year =      "2004",
  editor =    "A.A. Lubrecht and G. Dalmaz",
  publisher = "Elsevier",
  keywords =  "computational mechanics, EHL, ehl",
  url =       "http://www.sci.utah.edu/publications/goodyer04/GoodyerFairlieHartBerzinsScales04.pdf",
}

@TechReport{SCI:Goo2005a,
  author =    "C.E. Goodyer and M. Berzins",
  title =     "Parallelisation and Scalability Issues in a
              Multilevel EHL Solver",
  number =    "2005.05",
  year =      "2005",
  institution = "School of Computing, University of Leeds",
  type =      "Report",
  url =       "http://www.sci.utah.edu/publications/goodyer05/2005_05.pdf",
}

@Article{SCI:Goo2006b,
  author =    "C.E. Goodyer and M. Berzins and P.K. Jimack and
              L.E. Scales",
  title =     "A {G}rid-enabled Problem Solving Environment for
              Parallel Computational Engineering Design",
  journal =   "Advances in Engineering Software",
  volume =    "37",
  number =    "7",
  pages =     "439--449",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/goodyer06/GBJS05.pdf",
}

@InCollection{SCI:Goo2006c,
  author =    "C.E. Goodyer and M. Berzins",
  title =     "Solving Computationally Intensive Engineering
              Problems on the {G}rid using {P}roblem {S}olving
              {E}nvironments",
  booktitle = "Grid Computing: Software Environments and Tools",
  pages =     "284--301",
  year =      "2006",
  editor =    "J.C. Cunha and O.F. Rana",
  publisher = "Springer Verlag",
  url =       "http://www.sci.utah.edu/publications/goodyer06/CEGMBchapter12.pdf",
}

@Article{SCI:Goo2006d,
  author =    "C.E. Goodyer and M. Berzins",
  title =     "Adaptive Timestepping for Elastohydrodynamic
              Lubrication Solvers",
  journal =   "SIAM Journal on Scientific Computing",
  volume =    "28",
  number =    "2",
  pages =     "626-650",
  year =      "2006",
  publisher = "SIAM",
  doi =       "10.1137/050622092",
  keywords =  "EHL, elastohydrodynamic lubrication, method of
              lines, differential-algebraic equations, variable
              timestepping, error balancing",
  url =       "http://www.sci.utah.edu/publications/goodyer06/GoodyerSIAM2006.pdf",
}

@InProceedings{SCI:Goo2007a,
  author =    "C. Goodlett and P.T. Fletcher and W. Lin and G.
              Gerig",
  title =     "Quantification of Measurement Error in DTI:
              Theoretical Predictions and Validation",
  booktitle = "Proceedings of The 10th International Conference
              on Medical Image Computing and Computer Assisted
              Intervention (MICCAI 2007)",
  volume =    "4792",
  pages =     "10--17",
  year =      "2007",
  series =    "Lecture Notes in Computer Science",
  month =     "November",
  pmid =      "18051038",
  keywords =  "tensor field methods, diffusion tensor imaging",
}

@Article{SCI:Goo2007b,
  author =    "C.E. Goodyer and M. Berzins",
  title =     "Parallelisation and Scalability Issues of a
              Multilevel EHL Solver",
  journal =   "Concurrency and Computation: Practice and
              Experience",
  volume =    "19",
  number =    "4",
  pages =     "369--396",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/goodyer07/Goodyer_EHLsolver.pdf",
}

@InProceedings{SCI:Goo2007c,
  author =    "C.B. Goodlett and P.T. Fletcher and W. Lin and G.
              Gerig",
  title =     "Noise-Induced Bias in Low-Direction Diffusion
              Tensor MRI: Replication of Monte-Carlo Simulation
              with In-Vivo Scans",
  booktitle = "Proceedings of ISMRM 2007",
  pages =     "(accepted)",
  year =      "2007",
}

@InProceedings{SCI:Goo2008a,
  author =    "C. Goodlett and P.T. Fletcher and J. Gilmore and
              G. Gerig",
  title =     "Group Statistics of DTI Fiber Bundles Using
              Spatial Functions of Tensor Measures",
  booktitle = "Proceedings of Medical Image Computing and
              Computer Assisted Intervention 2008, Lecture Notes
              in Computer Science LNCS",
  volume =    "11",
  number =    "1",
  pages =     "1068--1075",
  year =      "2008",
  publisher = "Springer Verlag",
  month =     "September",
  note =      "Nominated for best paper award.",
  pmid =      "18979851",
  keywords =  "ucnia",
  url =       "http://www.sci.utah.edu/publications/goodlett08/tractstats.pdf",
}

@Article{SCI:Goo2008b,
  author =    "C. Goodlett and P.T. Fletcher and J.H. Gilmore and
              G. Gerig",
  title =     "Group Analysis of DTI Fiber Tract Statistics with
              Application to Neurodevelopment",
  journal =   "NeuroImage",
  pages =     "(to appear)",
  year =      "2008",
  month =     "December",
  url =       "http://www.sci.utah.edu/publications/goodlett08/DTI_population.pdf",
}

@InProceedings{SCI:Goo2008c,
  author =    "C.E. Goodyer and J. Wood and M. Berzins",
  title =     "Mathematical modeling of chemical diffusion
              through skin using Grid-based PSEs",
  booktitle = "Modeling, Simulation and Optimization of Complex
              Processes: Proceedings of the Third International
              Conference on High Performance Scientific
              Computing",
  pages =     "249--258",
  year =      "2008",
  editor =    "Bock HG, Kostina E, Phu HX, Rannacher R",
  publisher = "Springer",
  url =       "http://www.sci.utah.edu/publications/goodyer08/Goodyer_SkinDiffusion2008.pdf",
}

@Article{SCI:Goo2009a,
  author =    "C. Goodlett and P.T. Fletcher and J.H. Gilmore and
              G. Gerig",
  title =     "Group analysis of DTI fiber tract statistics with
              application to neurodevelopment",
  journal =   "Neuroimage",
  volume =    "45",
  number =    "1 (suppl 1)",
  pages =     "S133--S142",
  year =      "2009",
  pmid =      "19059345",
  url =       "http://www.sci.utah.edu/publications/goodlett09/Goodlett_NeuroImage2009.pdf",
}

@Article{SCI:Gop2011a,
  author =    "G. Gopalakrishnan and R.M. Kirby and S. Siegel and
              R. Thakur and W. Gropp and E. Lusk and B.R. de
              Supinski and M. Schultz and G. Bronevetsky",
  title =     "Formal Analysis of MPI-Based Parallel Programs:
              Present and Future",
  journal =   "Communications of the ACM",
  pages =     "(accepted)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/gopalakrishnan11/Gopalakrishnan_ACM2011.pdf",
}

@InProceedings{SCI:Gor2007a,
  author =    "K. Gorczowski and M. Styner and J.Y. Jeong and
              J.S. Marron and J. Piven and H.C. Hazlett and S.M.
              Pizer and G. Gerig",
  title =     "Statistical Shape Analysis of Multi-Object
              Complexes",
  booktitle = "Proceedings of the 2007 IEEE Conference on
              Computer Vision and Pattern Recognition",
  pages =     "1--8",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/gorczowski07/Gorczowski_CVPR2007a.pdf",
}

@InProceedings{SCI:Gor2007b,
  author =    "K. Gorczowski and M. Stynera and J.Y. Jeonga and
              J.S. Marron and J. Piven and H.C. Hazlett and S.M.
              Pizer and G. Gerig",
  title =     "Discrimination Analysis using Multi-Object
              Statistics of Shape and Pose",
  booktitle = "Proceedings of the 2007 SPIE Conference",
  volume =    "6512",
  year =      "2007",
  month =     "January",
}

@Article{SCI:Gor2010a,
  author =    "K. Gorczowski and M. Styner and J.Y. Jeong and
              J.S. Marron and J. Piven and H.C. Hazlett and S.M.
              Pizer and G. Gerig",
  title =     "Multi-object analysis of volume, pose, and shape
              using statistical discrimination",
  journal =   "IEEE Trans Pattern Anal Mach Intell.",
  volume =    "32",
  number =    "4",
  pages =     "652--661",
  year =      "2010",
  month =     "April",
  doi =       "10.1109/TPAMI.2009.92",
  pmid =      "20224121",
  url =       "http://www.sci.utah.edu/publications/gorczowski10/Gorczowski_PAMI2010.pdf",
}

@InProceedings{SCI:Got2001,
  author =    "A. Gothandaraman and R.T. Whitaker and J.
              Gregor",
  title =     "Total Variation For The Removal of Blocking
              Effects in {DCT} based Encoding",
  booktitle = c-ICIP,
  pages =     "455--458",
  year =      "2001",
  month =     "October",
  keywords =  "ip image processing signal processing, imaging",
}

@InProceedings{SCI:Gou2007a,
  author =    "S. Gouttard and M. Styner and S. Joshi and R.G.
              Smith and H.C. Hazlett and G. Gerig",
  title =     "Subcortical Structure Segmentation Using
              Probabilistic Atlas Priors",
  booktitle = "Proceedings of The 10th International Conference
              on Medical Image Computing and Computer Assisted
              Intervention (MICCAI 2007)",
  volume =    "6512",
  number =    "65122J",
  pages =     "(published online)",
  year =      "2007",
  note =      "Presented at Worshop - 3D Segmentation in the
              Clinic: a Grand Challenge",
  keywords =  "neuro brain, brain atlasing",
  url =       "http://www.sci.utah.edu/publications/gouttard07/MICCAI07_SegmentationWorkshop.pdf",
}

@InProceedings{SCI:Gou2008a,
  author =    "S. Gouttard and M. Styner and M. Prastawa and J.
              Piven and G. Gerig",
  title =     "Assessment of Reliability of Multi-site
              Neuroimaging via Traveling Phantom Study",
  booktitle = "Proceedings of Medical Image Computing and
              Computer Assisted Intervention 2008, Lecture Notes
              in Computer Science LNCS",
  volume =    "5242",
  pages =     "263--270",
  year =      "2008",
  month =     "September",
  keywords =  "ucnia",
  url =       "http://www.sci.utah.edu/publications/gouttard08/Gouttard-MICCAI08.pdf",
}

@Article{SCI:Gou2009a,
  author =    "S. Gouttard and M. Prastawa and E. Bullitt and W.
              Lin and C. Goodlett and G. Gerig",
  title =     "Constrained Data Decomposition and Regression for
              Analyzing Healthy Aging from Fiber Tract Diffusion
              Properties",
  journal =   "Medical Image Computing and Computer-Assisted
              Intervention – MICCAI 2009",
  volume =    "5761",
  pages =     "321--328",
  year =      "2009",
  series =    "Lecture Notes in Computer Science LNCS",
  pmid =      "20426003",
  url =       "http://www.sci.utah.edu/publications/gouttard09/Gouttard_MICCAI2009.pdf",
}

@InProceedings{SCI:Gou2012a,
  author =    "S. Gouttard and C.B. Goodlett and M. Kubicki and
              G. Gerig",
  title =     "Measures for Validation of DTI Tractography",
  booktitle = "SPIE",
  pages =     "(to appear)",
  year =      "2012",
  url =       "http://www.sci.utah.edu/publications/gouttard12/Gouttarad_dti_validation_spie2012-final-annot.pdf",
}

@InProceedings{SCI:Gra2005a,
  author =    "L. Grady and T. Tasdizen",
  title =     "A Geometric Multigrid Approach to Solving the 2D
              Inhomogeneous Laplace Equation with Internal
              Dirichlet Boundary Conditions",
  booktitle = c-ICIP,
  volume =    "2",
  pages =     "642--645",
  year =      "2005",
  month =     "September",
  keywords =  "ip image processing signal processing",
}

@Article{SCI:Gre2002a,
  author =    "J. Gregor and R.T. Whitaker",
  title =     "Indoor Scene Reconstruction for Sets of Noisy
              Range Images",
  journal =   "Graphical Models",
  volume =    "63",
  number =    "5",
  pages =     "304--332",
  year =      "2002",
  month =     "September",
  keywords =  "ip image processing signal processing, surface
              processing, imaging",
}

@Article{SCI:Gre2002b,
  author =    "J. Gregor and S.S. Gleason and M.J. Paulus and J.
              Cates",
  title =     "Fast Feldkamp Reconstruction Based on Focus of
              Attention and Distributed Computing",
  journal =   j-IJIST,
  volume =    "12",
  number =    "6",
  pages =     "229--234",
  year =      "2002",
}

@InProceedings{SCI:Gre2002c,
  author =    "B. Gregoski and M. Duchaineau and P. Lindstrom and
              V. Pascucci and K. Joy",
  title =     "Interactive View-Dependent Rendering of Large
              Isosurfaces",
  booktitle = "Proceedings of IEEE Conference on Visualization
              ({VIS}-02)",
  pages =     "475--482",
  year =      "2002",
  month =     "October",
  location =  "Boston, MA",
  note =      "UCRL-JC-146819",
}

@TechReport{SCI:Gri2003a,
  author =    "C.P. Gribble and S.G. Parker",
  title =     "A Survey of the Itanium Architecture from a
              Programmer's Perspective",
  number =    "UUSCI-2003-003",
  year =      "2003",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  month =     "August",
  keywords =  "survey, Itanium cluster, hardware",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2003-003.pdf",
}

@TechReport{SCI:Gri2004a,
  author =    "C. Gribble and S.G. Parker and C.D. Hansen",
  title =     "Interactive Volume Rendering of Large Datasets
              Using the Silicon Graphics Onyx4 Visualization
              System",
  number =    "UUCS-04-003",
  year =      "2004",
  institution = "University of Utah School of Computing",
  month =     "January 27th",
  keywords =  "volume rendering, parallel visualization, rhesus,
              fire pool, csafe c-safe",
}

@TechReport{SCI:Gri2006a,
  author =    "C. Gribble and T. Ize and A. Kensler and I. Wald
              and S.G. Parker",
  title =     "A Coherent Grid Traversal Approach to Visualizing
              Particle-based Simulation Data",
  number =    "UUSCI-2006-024",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "rtrt real-time ray tracing, interactive rt
              distributed interactive ray tracing dirt, grid
              traversal, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-024.pdf",
}

@InProceedings{SCI:Gri2006b,
  author =    "C.P. Gribble and A.J. Stephens and J.E. Guilkey
              and S.G. Parker",
  title =     "Visualizing Particle-Based Simulation Datasets on
              the Desktop",
  booktitle = "Proceedings of the British HCI 2006 Workshop on
              Combining Visualization and Interaction to
              Facilitate Scientific Exploration and Discovery",
  pages =     "(to appear)",
  year =      "2006",
  keywords =  "mpm material point method, rtrt real-time ray
              tracing, csafe c-safe",
  url =       "http://www.sci.utah.edu/publications/cgribble06/gpup-hci06.pdf",
}

@InProceedings{SCI:Gri2006c,
  author =    "C.P. Gribble and S.G. Parker",
  title =     "Enhancing Interactive Particle Visualization with
              Advanced Shading Models",
  booktitle = "Proceedings of the ACM Siggraph Third Symposium on
              Applied Perception in Graphics and Visualization",

  pages =     "(to appear)",
  year =      "2006",
  keywords =  "mpm material point method, rtrt real-time ray
              tracing, csafe c-safe, rtcenter",
  url =       "http://www.sci.utah.edu/publications/cgribble06/plt-apgv06.pdf",
}

@InProceedings{SCI:Gri2007a,
  author =    "C.P. Gribble and S.G. Parker",
  title =     "Interactive Visualization with Advanced Shading
              Models using Lazy Evaluation",
  booktitle = "Proceedings of the 2007 Eurographics Symposium on
              Parallel Graphics and Visualization",
  pages =     "37--44",
  year =      "2007",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, rtcenter",
}

@Article{SCI:Gri2007b,
  author =    "C.P. Gribble and C. Brownlee and S.G. Parker",
  title =     "Practical Global Illumination for Interactive
              Particle Visualization",
  journal =   "Computers and Graphics",
  volume =    "32",
  number =    "1",
  pages =     "14--24",
  year =      "2007",
  month =     "February",
}

@InProceedings{SCI:Gru2011a,
  author =    "J. Grueninger and H. Hoffman and U. Kloos and and
              J. Krueger",
  title =     "Multi-Resolution-Display System for Virtual
              Reality Setups",
  booktitle = "Proceedings of the 14th International Conference
              on Human-Computer Interaction, HCI International",

  volume =    "6779/2011",
  pages =     "180--189",
  year =      "2011",
  series =    "Lecture Notes in Computer Science",
  doi =       "10.1007/978-3-642-21716-6_19",
  url =       "http://www.sci.utah.edu/publications/grueninger11/Gruninger_HCI2011.pdf",
}

@Article{SCI:Gru88a,
  author =    "R. Grupen and C.D. Hansen and T. Henderson",
  title =     "Apparent Symmetries in Range Data",
  journal =   "Pattern Recognition Letters",
  volume =    "7",
  pages =     "107--111",
  year =      "1988",
  month =     "February",
}

@InProceedings{SCI:Gue1999a,
  author =    "C. Guerra and V. Pascucci",
  title =     "On Matching Sets of {3D} Segments",
  booktitle = "Proceedings of SPIE Vision Geometry VIII",
  pages =     "157-167",
  year =      "1999",
  address =   "Denver, USA",
}

@InProceedings{SCI:Gue1999b,
  author =    "C. Guerra and V. Pascucci",
  title =     "{3D} Segment Matching Using the Hausdorff
              Distance",
  booktitle = "Proceedings of the IEEE Conference on Image
              Processing and its Applications, IPA99",
  pages =     "18--22",
  year =      "1999",
}

@InProceedings{SCI:Gue1999c,
  author =    "C. Guerra and V. Pascucci",
  title =     "Segment Matching for Protein Secondary Structure
              Comparison",
  booktitle = "Proceedings of the Third International Conference
              on Computational Molecular Biology, {RECOMB}'99",
  pages =     "30",
  year =      "1999",
  organization = "ACM",
  address =   "Lyon, France",
}

@Article{SCI:Gue2001a,
  author =    "C. Guerra and V. Pascucci",
  title =     "Finding Line Segments with Tabu Search",
  journal =   "{IEICE} Transactions on Information \& Systems",
  volume =    "E84-D",
  number =    "12",
  pages =     "1739-1744",
  year =      "2001",
  month =     "December",
}

@Article{SCI:Gue2004a,
  author =    "C. Guerra and V. Pascucci",
  title =     "Line-Based Object Recognition Using Hausdorff
              Distance: From Range Images to Molecular Secondary
              Structure",
  journal =   "Image and Vision Computing",
  volume =    "23",
  number =    "4",
  pages =     "405-415",
  year =      "2005",
  month =     "April",
  note =      "UCRL-JRNL-208551",
}

@Article{SCI:Gui2003a,
  author =    "J.E. Guilkey and J.A. Weiss",
  title =     "Implicit Time Integration with the Material Point
              Method",
  journal =   "International Journal for Numerical Methods in
              Engineering",
  volume =    "57",
  pages =     "1323--1338",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/guilkey03/impmpm_FINAL.pdf",
}

@InProceedings{SCI:Gui2004a,
  author =    "J.E. Guilkey and Y. Zhang and J.B. Hoying and J.A.
              Weiss",
  title =     "Mechanical Simulation of Multicellular Structures
              with the Material Point Method",
  booktitle = "Proc 6th International Symposium on Computer
              Methods in Biomechanics and Biomedical
              Engineering",
  year =      "2004",
  month =     "March",
  location =  "Madrid, Spain",
  note =      "Winner of the Taylor and Francis Prize for
              Outstanding Innovation in Computer Methods in
              Biomechanics and Biomedical Engineering",
  keywords =  "computational mechanics, computational
              biomechanics, mpm material point method",
  url =       "http://www.sci.utah.edu/publications/guilkey04/guilkey_cmbbe_2004.pdf",
}

@Article{SCI:Gui2005a,
  author =    "J.E. Guilkey and J.B. Hoying JB and J.A. Weiss",
  title =     "Computational modeling of multicellular constructs
              with the Material Point Method",
  journal =   "Journal of Biomechanics",
  pages =     "(published online)",
  year =      "2005",
  month =     "June",
  keywords =  "computational mechanics, mpm material point
              method, computational biomechanics, angiogenesis",

  url =       "http://www.sci.utah.edu/publications/guilkey05/Journal_Biomech2005.pdf",
}

@Article{SCI:Gui2006a,
  author =    "J.E. Guilkey and J.B. Hoying and J.A. Weiss",
  title =     "Computational Modeling of Multicellular Constructs
              with the Material Point Method",
  journal =   "Journal of Biomechanics",
  volume =    "39",
  number =    "11",
  pages =     "2074--2086",
  year =      "2006",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/guilkey06/guilkey_j_biomech_2006.pdf",
}

@TechReport{SCI:Gui2009a,
  author =    "J. Guilkey and T. Harman and J. Luitjens and J.
              Schmidt and J. Thornock and J.D. de St. Germain and
              S. Shankar and J. Peterson and C. Brownlee",
  title =     "Uintah User Guide Version 1.1",
  number =    "UUSCI-2009-007",
  year =      "2009",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  keywords =  "csafe, c-safe, uintah, scirun, fire simulation",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2009-007.pdf",
}

@Article{SCI:Gul2005a,
  author =    "D. Gullmar and J.R. Reichenbach and A. Anwander
              and T. Knosche and C.H. Wolters and M. Eiselt and
              J. Haueisen",
  title =     "Influence of Anisotropic Conductivity of the White
              Matter Tissue on EEG Source Reconstruction - An FEM
              Simulation Study",
  journal =   j-IJBEM,
  volume =    "7",
  number =    "1",
  pages =     "108--110",
  year =      "2005",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, inverse eeg, focusing
              inversion, forward simulation, neuro brain, ncrr,
              simulation math modeling, bioelectric fields",
  url =       "http://www.sci.utah.edu/publications/gullmar05/Gullmar_IJBEM.pdf",
}

@InProceedings{SCI:Gum2001a,
  author =    "S. Gumhold and X. Wang and R.S. MacLeod",
  title =     "Feature Extraction from Point Clouds",
  booktitle = "Proceedings, 10th International Meshing Round
              Table",
  pages =     "293--305",
  year =      "2001",
  publisher = "Sandia National Laboratories",
  keywords =  "ncrr, computational pde pdes computational partial
              differential equations evaporation, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/gumhold01/sr0006.pdf",
}

@InProceedings{SCI:Guo2005a,
  author =    "H. Guo and A. Rangarajan and S. Joshi",
  title =     "3-D Diffeomorphic Shape Registration on
              Hippocampal Data Sets",
  booktitle = "Med Image Comput Comput Assist Interv Int Conf Med
              Image Comput Comput Assist Interv",
  volume =    "8 (Pt. 2)",
  pages =     "984--991",
  year =      "2005",
}

@InProceedings{SCI:Gyu2005a,
  author =    "A. Gyulassy and V. Natarajan and V. Pascucci and
              P.-T. Bremer and B. Hamann",
  title =     "Topology-based Simplification for Feature
              Extraction from 3D Scalar Fields",
  booktitle = "Proceedings of the IEEE Conference on
              Visualization ({VIS}-05)",
  pages =     "275--280",
  year =      "2005",
  month =     "October",
}

@Article{SCI:Gyu2006a,
  author =    "A. Gyulassy and V. Natarajan and V. Pascucci and
              P.-T. Bremer and B. Hamann",
  title =     "A Topological Approach to Simplification of
              Three-Dimensional Scalar Functions",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "12",
  number =    "4",
  pages =     "474--484",
  year =      "2006",
  month =     "August",
}

@Article{SCI:Gyu2007a,
  author =    "A. Gyulassy and V. Natarajan and B. Hamann and V.
              Pascucci",
  title =     "Efficient Computation of Morse-Smale Complexes for
              Three-dimensional Scalar Functions",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  year =      "2007",
  note =      "(presented at IEEE VIS 2007)",
}

@Article{SCI:Gyu2007b,
  author =    "A. Gyulassy and V. Natarajan and B. Hamann and M.
              Duchaineau and V. Pascucci and E. Bringa and A.
              Higginbotham",
  title =     "Topologically Clean Distance Fields",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  year =      "2007",
  note =      "(presented at IEEE VIS 2007)",
}

@InProceedings{SCI:Gyu2011a,
  author =    "Attila Gyulassy and J.A. Levine and V. Pascucci",
  title =     "Visualization of Discrete Gradient Construction
              (Multimedia submission)",
  booktitle = "Proceedings of the 27th Symposium on Computational
              Geometry",
  pages =     "289--290",
  year =      "2011",
  publisher = "ACM",
  month =     "June",
  location =  "Paris, France",
  doi =       "10.1145/1998196.1998241",
  url =       "http://www.sci.utah.edu/publications/gyulassy11/Gyulassy_SymCompGeo2011.pdf",
}

@Article{SCI:Ha2010a,
  author =    "L. Ha and M. Prastawa and G. Gerig and J.H.
              Gilmore and C.T. Silva and S. Joshi",
  title =     "Image Registration Driven by Combined
              Probabilistic and Geometric Descriptors",
  journal =   "Med Image Comput Comput Assist Interv.",
  volume =    "13",
  number =    "2",
  pages =     "602--609",
  year =      "2010",
  pmid =      "20879365",
  url =       "http://www.sci.utah.edu/publications/ha10/Ha_ImageReg2010.pdf",
}

@InProceedings{SCI:Ha2011a,
  author =    "L.K. Ha and J. Krueger and J. Comba and S. Joshi
              and C.T. Silva",
  title =     "Optimal Multi-Image Processing Streaming Framework
              on Parallel Heterogeneous Systems",
  booktitle = "Proceedings of Eurographics Symposium on Parallel
              Graphics and Visualization 2011",
  pages =     "(to appear)",
  year =      "2011",
  note =      "Awarded Best Paper!",
  url =       "http://www.sci.utah.edu/publications/ha11/Ha_MIP-egpgv2011.pdf",
}

@Article{SCI:Ha2011b,
  author =    "L.K. Ha and M. Prastawa and G. Gerig and J.H.
              Gilmore and C.T. Silva",
  title =     "Efficient Probabilistic and Geometric Anatomical
              Mapping Using Particle Mesh Approximation on
              GPUs",
  journal =   "International Journal of Biomedical Imaging,
              Special Issue in Parallel Computation in Medical
              Imaging Applications",
  volume =    "2011",
  pages =     "16 pages",
  year =      "2011",
  note =      "Article ID 572187",
  doi =       "10.1155/2011/572187",
  url =       "http://www.sci.utah.edu/publications/ha11/Ha_IJBI2011.pdf",
}

@InBook{SCI:Ha2011c,
  author =    "L.K. Ha and J. Krueger and S. Joshi and C.T.
              Silva",
  title =     "Multi-scale Unbiased Diffeomorphic Atlas
              Construction on Multi-GPUs",
  volume =    "1",
  pages =     "42",
  year =      "2011",
  chapter =   "10",
  publisher = "Morgan Kaufmann",
  url =       "http://www.sci.utah.edu/publications/ha11/Ha_GPUCG2011.pdf",
}

@InProceedings{SCI:Hal1995a,
  author =    "J.W. Haller and M.I. Miller and G.E. Christensen
              and S. Joshi and M. Gado and J. Csernansky and M.W.
              Vannier",
  title =     "A Comparison of Automated and Manual Segmentation
              of Hippocampus MR Images",
  booktitle = "Proceedings of SPIE Medical Imaging",
  pages =     "206--215",
  year =      "1995",
  month =     "March",
}

@InProceedings{SCI:Hal1995b,
  author =    "J.W. Haller and G.E. Christensen and S. Joshi and
              M.I. Miller and M.W. Vannier",
  title =     "Digital Atlas-Based Segmentation of the
              Hippocampus",
  booktitle = "Computer Assisted Radiology: Proceedings of the
              International Symposium on Computer and
              Communications Systems for Image Guided Diagnosis
              and Therapy",
  pages =     "152--157",
  year =      "1995",
  editor =    "C.C. Jaffe, H.U. Lemke, K. Inamura and M.W.
              Vannier",
  month =     "June",
}

@Article{SCI:Hal1996a,
  author =    "J.W. Haller and G.E. Christensen and S.C. Joshi
              and J.W. Newcomer and M.I. Miller and J.G.
              Csernansky and M. Vannier",
  title =     "Hippocampal MR Imaging Morphometry by Means of
              General Pattern Matching",
  journal =   "Radiology",
  volume =    "199",
  number =    "3",
  pages =     "787--791",
  year =      "1996",
  month =     "June",
}

@Article{SCI:Hal1997a,
  author =    "J.W. Haller and A. Banerjee and G.E. Christensen
              and M. Gado and S. Joshi and M.I. Miller and Y.
              Sheline and M.W. Vannier and J. Csernansky",
  title =     "Three-Dimensional Hippocampal MR Morphometry with
              High-Dimensional Transformation of a Neuroanatomic
              Atlas",
  journal =   "Radiology",
  volume =    "202",
  number =    "2",
  pages =     "504--510",
  year =      "1997",
  month =     "February",
}

@TechReport{SCI:Ham2005a,
  author =    "C.W. Hamman and R.M. Kirby and M. Berzins",
  title =     "Parallelization and Scalability of a Spectral
              Element Solver",
  number =    "UUSCI-2005-011",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "parallel processing, scaling, spectral element
              solver",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-011.pdf",
}

@InProceedings{SCI:Ham2006b,
  author =    "C.W. Hamman and R.M. Kirby and J.C. Klewicki",
  title =     "On the Lamb Vector Divergence as a Momentum Field
              Diagnostic Employed in Turbulent Channel Flow",
  booktitle = "Proceedings of the 59th Annual Meeting of the
              American Physical Society, Division of Fluid
              Dynamics",
  year =      "2006",
  month =     "November",
  location =  "Tampa Bay, Fl",
}

@Article{SCI:Ham2007a,
  author =    "C.W. Hamman and R.M. Kirby and M. Berzins",
  title =     "Parallelization and Scalability of a Spectral
              Element Channel Flow Solver for Incompressible
              Navier-Stokes Equations",
  journal =   "Concurrency and Computation: Practice and
              Experience",
  volume =    "14",
  number =    "10",
  pages =     "1403--1422",
  year =      "2007",
  keywords =  "parallel processing, scaling, spectral element
              solver, ,  parallel processing",
  url =       "http://www.sci.utah.edu/publications/hamman07/hammankirbyberzins07.pdf",
}

@Article{SCI:Ham2007b,
  author =    "C.R. Hamman and R.M. Kirby and M. Berzins",
  title =     "Parallel Direct Simulation of Incompressible
              Navier Stokes Equations",
  journal =   "Concurrency and Computation",
  volume =    "19",
  number =    "10",
  pages =     "1403-1427",
  year =      "2007",
  keywords =  "cfd computational fluid dynamics, fluid structure
              problems, parallel visualization",
  url =       "http://www.sci.utah.edu/publications/hamman07/Kirby-21.pdf",
}

@Article{SCI:Ham2008a,
  author =    "C.W. Hamman and J.C. Klewicki and R.M. Kirby",
  title =     "On the Lamb Vector Divergence in Navier-Stokes
              Flows",
  journal =   "Journal of Fluid Mechanics",
  pages =     "(accepted)",
  year =      "2008",
  keywords =  "navier-stokes, flow visualization, computational
              fluid dynamics, cfd",
}

@Article{SCI:Han2002a,
  author =    "K.A. Hansen and J.A. Weiss and J.K. Barton",
  title =     "Recruitment of Tendon Crimp with Applied Tensile
              Strain",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "124",
  pages =     "72--77",
  year =      "2002",
  url =       "http://www.sci.utah.edu/publications/hansen02/octjbme.pdf",
}

@Article{SCI:Han2003a,
  author =    "C.D. Hansen and C.R. Johnson",
  title =     "Graphics Applications for Grid Computing",
  journal =   j-CGA,
  pages =     "20--21",
  year =      "2003",
  month =     "March/April",
  keywords =  "collaborative remote visualization, parallel
              visualization",
  url =       "http://www.sci.utah.edu/publications/hansen03/Graphics-Applications-Grid03.pdf",
}

@InProceedings{SCI:Han2004a,
  author =    "Q. Han and C. Lu and G. Liu and S.M. Pizer and S.
              Joshi and A. Thall",
  title =     "Representing Multi-Figure Anatomical Objects",
  booktitle = "Proceedings of the International Symposium on
              Biomedical Imaging (ISBI)",
  pages =     "1251--1254",
  year =      "2004",
  location =  "Piscataway, NJ",
  url =       "http://www.sci.utah.edu/publications/han04/ISBI04-Han_multi-fig.pdf",
}

@Book{SCI:Han2005a,
  author =    "C.D. Hansen and C.R. Johnson",
  title =     "The Visualization Handbook",
  year =      "2005",
  editor =    "C.D. Hansen and C.R. Johnson",
  publisher = "Elsevier",
  isbn =      "0-12-387582-X",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, inverse eeg, inverse
              meg, forward simulation, cfd computational fluid
              dynamics, computational mechanics, computational
              pde pdes computational partial differential
              equations, pse grid computing, scalar field
              methods, isosurface extraction, volume rendering,
              transfer functions, rtrt real-time ray tracing,
              vector field methods, visual haptic workbench,
              tensor field methods, vr virtual reality haptics,
              remote visualization, remote isosurface
              visualization, parallel visualization, ip image
              processing signal processing, surface processing,
              scirun, biopse, ncrr",
}

@Article{SCI:Han2005b,
  author =    "Q. Han and S.M. Pizer and D. Merck and S. Joshi
              and J.-Y. Jeong",
  title =     "Multi-figure Anatomical Objects for Shape
              Statistics",
  journal =   "Information Processing in Medical Imaging
              (IPMI)",
  number =    "701--712",
  year =      "2005",
  editor =    "G. Christensen and M. Sonka",
  month =     "July",
  url =       "http://www.sci.utah.edu/publications/han05/IPMI05_Han.pdf",
}

@InCollection{SCI:Han2009a,
  author =    "C.D. Hansen and C.R. Johnson and V. Pascucci and
              C.T. Silva",
  title =     "Visualization for Data-Intensive Science",
  booktitle = "The Fourth Paradigm: Data-Intensive Science",
  pages =     "153--164",
  year =      "2009",
  editor =    "S. Tansley, T. Hey, and K. Tolle",
  publisher = "Microsoft Research",
  url =       "http://www.sci.utah.edu/publications/hansen09/Vis-Book-Chapter-Aug09.pdf",
}

@InProceedings{SCI:Han87a,
  author =    "C.D. Hansen and T. Henderson",
  title =     "{CAGD}-Based Computer Vision",
  booktitle = "{IEEE} Computer Vision Workshop",
  pages =     "100--106",
  year =      "1987",
  month =     "December",
  location =  "Miami Beach, Florida",
}

@InProceedings{SCI:Han88a,
  author =    "C.D. Hansen and T. Henderson",
  title =     "Automatic Generation of Recognition Strategies",
  booktitle = "International Conference on Computer Vision",
  pages =     "275--279",
  year =      "1988",
  month =     "December",
  location =  "Tampa, Florida",
}

@InProceedings{SCI:Han88b,
  author =    "C.D. Hansen and N. Ayache and F. Lustman",
  title =     "Towards Real-time Trinocular Stereo",
  booktitle = "International Conference on Computer Vision",
  pages =     "129--133",
  year =      "1988",
  month =     "December",
  location =  "Tampa, Florida",
}

@InProceedings{SCI:Han88c,
  author =    "C.D. Hansen and N. Ayache and Francis Lustman",
  title =     "Efficient Depth Estimation using Trinocular
              Stereo",
  booktitle = "{SPIE} Conference on Intelligent Robots",
  year =      "1988",
  month =     "November",
  location =  "Cambridge, Massachusetts",
  note =      "Refereed abstract.",
}

@Article{SCI:Han89a,
  author =    "C.D. Hansen and T. Henderson",
  title =     "{CAGD}-Based Computer Vision",
  journal =   "{IEEE} Pattern Recognition and Machine
              Intelligence",
  volume =    "11",
  number =    "10",
  pages =     "1181--1193",
  year =      "1989",
  month =     "November",
}

@InProceedings{SCI:Han90a,
  author =    "C.D. Hansen",
  title =     "High-level Tools for Scientific Visualization",
  booktitle = "Computer Use By Engineers (CUBE) Symposium",
  year =      "1990",
  month =     "November",
  location =  "Sante Fe, NM.",
  note =      "Refereed abstract.",
}

@InProceedings{SCI:Han91a,
  author =    "C.D. Hansen and S. Tenbrink",
  title =     "The Impact of Gigabit Networking on Imaging",
  booktitle = "Digital Imaging",
  pages =     "191--194",
  year =      "1991",
  month =     "April",
  location =  "Anaheim, Ca.",
}

@InProceedings{SCI:Han92a,
  author =    "C.D. Hansen and P. Hinker",
  title =     "Massively Parallel Isosurface Extraction",
  booktitle = "Visualization 1992",
  pages =     "77--83",
  year =      "1992",
  month =     "October",
  location =  "Boston, Ma.",
}

@Article{SCI:Han92b,
  author =    "C.D. Hansen and D. Butler",
  title =     "Visualization '91 Workshop Report: Scientific
              Visualization Environments",
  journal =   "Computer Graphics Quarterly",
  volume =    "26",
  number =    "3",
  pages =     "213--216",
  year =      "1992",
  month =     "August",
}

@Article{SCI:Han93a,
  author =    "C.D. Hansen and S. Tenbrink",
  title =     "The Impact of Gigabit Network Research on
              Scientific Visualization",
  journal =   "The Visual Computer",
  volume =    "9",
  number =    "6",
  pages =     "318--323",
  year =      "1993",
}

@InProceedings{SCI:Han93b,
  author =    "C.D. Hansen and M. Krogh",
  title =     "Visualization on Massively Parallel Computers
              using {CM}/{AVS}",
  booktitle = "AVS Users Conference",
  pages =     "129--137",
  year =      "1993",
  month =     "May",
  location =  "Orlando, Fl.",
}

@Article{SCI:Han94a,
  author =    "C.D. Hansen T.Crockett and S. Whitman",
  title =     "Parallel Rendering",
  journal =   "{IEEE} Parallel and Distributed Technology",
  volume =    "2",
  number =    "2",
  pages =     "7",
  year =      "1994",
  month =     "Summer",
  note =      "Guest editors' introduction",
  keywords =  "parallel visualization",
}

@InProceedings{SCI:Han95a,
  author =    "C.D. Hansen and G.C. de Verdiere and M. Krogh and 
              J. Painter and R. Troutman",
  title =     "Binary-Swap Volumetric Rendering on the T3D",
  booktitle = "Cray Users Group Conference",
  pages =     "61--69",
  year =      "1995",
  month =     "March",
  location =  "Denver, Co.",
  keywords =  "volume rendering",
}

@InProceedings{SCI:Han95b,
  author =    "C.D. Hansen and M. Krogh and W. White",
  title =     "Massively Parallel Visualization: Parallel
              Rendering",
  booktitle = "{SIAM} Parallel Computation Conference",
  pages =     "790--795",
  year =      "1995",
  month =     "February",
  location =  "San Francisco, Ca.",
}

@InProceedings{SCI:Han97a,
  author =    "C.D. Hansen and M. Krogh and J. Painter",
  title =     "Parallel Rendering Techniques for Massively
              Parallel Visualization",
  booktitle = "International Symposium on Parallel
              Algorithms/Architecture Synthesis",
  pages =     "276--281",
  year =      "1997",
  month =     "March",
  location =  "Aizu-Wakamatsu, Japan",
}

@Article{SCI:Han98a,
  author =    "C.D. Hansen",
  title =     "{EUROGRAPHICS} '97 Conference Report",
  journal =   "Computer Graphics Quarterly",
  volume =    "32",
  number =    "1",
  pages =     "39",
  year =      "1998",
  month =     "February",
}

@Article{SCI:Han98b,
  author =    "C.D. Hansen",
  title =     "{EUROGRAPHICS} '97: Budapest, Hungary, September
              4-8, 1997: Meeting Report",
  journal =   "Computer Graphics Forum",
  volume =    "16",
  number =    "5",
  pages =     "323--324",
  year =      "1998",
  month =     "February",
}

@InProceedings{SCI:Han99a,
  author =    "C.D. Hansen and T. Udeshi and S.G. Parker and P.
              Shirley",
  title =     "Parallel Methods for Isosurface Visualization",
  booktitle = "Ninth {SIAM} Conference on Parallel Processing for
              Scientific Computing",
  year =      "1999",
  note =      "extended abstract",
  keywords =  "isosurface extraction, parallel visualization",
  url =       "http://www.sci.utah.edu/publications/siam99/siam99a.ps.gz",
  url =       "http://www.sci.utah.edu/publications/siam99/siam99a.ps",
}

@Article{SCI:Hao2011b,
  author =    "X. Hao and R.T. Whitaker and P.T. Fletcher",
  title =     "Adaptive Riemannian Metrics for Improved Geodesic
              Tracking of White Matter",
  journal =   "Information Processing in Medical Imaging
              (IPMI)",
  volume =    "6801/2011",
  pages =     "13--24",
  year =      "2011",
  series =    "Lecture Notes in Computer Science (LNCS)",
  doi =       "10.1007/978-3-642-22092-0_2",
  keywords =  "namic",
  url =       "http://www.sci.utah.edu/publications/hao11/Hao_IPMI2011.pdf",
}

@Article{SCI:Har2005a,
  author =    "D.E. Hart and C.E. Goodyer and M. Berzins and P.K.
              Jimack and L.E. Scales",
  title =     "Adjoint Error Estimation for EHL-Like Models",
  journal =   j-IJNMF,
  volume =    "47",
  number =    "10-11",
  pages =     "1069--1075",
  year =      "2005",
  keywords =  "EHL, computational mechanics, ehl",
  url =       "http://www.sci.utah.edu/publications/hart05/HGBJS04.pdf",
}

@InCollection{SCI:Har2006a,
  author =    "D. Hart and C.E. Goodyer and M. Berzins and P.K.
              Jimack and L. Scales",
  title =     "Adjoint Error Estimation and Spatial Adaptivity
              for EHL-Like Models",
  booktitle = "Solid Mechanics and Its Applications",
  volume =    "134",
  number =    "2",
  pages =     "47--58",
  year =      "2006",
  publisher = "Springer Netherlands",
  keywords =  "computational mechanics, error estimation,
              discrete adjoint, EHL, friction calculation, mesh
              adaptation, ehl",
  url =       "http://www.sci.utah.edu/publications/hart06/HGBJS06.pdf",
}

@Article{SCI:Har2011a,
  author =    "D.E. Hart and M. Berzins and C.E. Goodyer and P.K.
              Jimack",
  title =     "Using Adjoint Error Estimation Techniques for
              Elastohydrodynamic Lubrication Line Contact
              Problems",
  journal =   "International Journal for Numerical Methods in
              Fluids",
  volume =    "67",
  pages =     "1559--1570",
  year =      "2011",
  note =      "Published online 29 October",
  keywords =  "EHL",
  url =       "http://www.sci.utah.edu/publications/hart11/Hart_HBGJ10.pdf",
}

@Article{SCI:Har98a,
  author =    "G. Hart and A. Tomlin and J. Smith and M.
              Berzins",
  title =     "Multi-scale Atmospheric Dispersion Modelling by
              the Use of Adaptive Grid Techniques",
  journal =   "Environmental Monitoring and Assessment",
  volume =    "52",
  pages =     "225--228",
  year =      "1998",
}

@InProceedings{SCI:Haw2005a,
  author =    "P. Hawkes and G. Kindlmann and D. Weinstein and
              G.M. Jones and C. Keller",
  title =     "Practical Vessel Imaging by Computed Tomography in
              Live Transgenic Mouse Models for Human Tumors",
  booktitle = "Proceedings of 2005 SMI Conference, 4th Annual
              Meeting of the Society for Molecular Imaging",
  year =      "2005",
  location =  "Cologne, Germany",
}

@Article{SCI:Haz2006a,
  author =    "H.C. Hazlett and M.D. Poe and G. Gerig and R.G.
              Smith and J. Piven",
  title =     "Cortical Gray and White Brain Tissue Volume in
              Adolescents and Adults with Autism",
  journal =   "Biological Psychiatry",
  volume =    "59",
  number =    "1",
  pages =     "1--96",
  year =      "2006",
  month =     "January",
}

@Article{SCI:Haz2009a,
  author =    "H.C. Hazlett and M.D. Poe and A.A. Lightbody and
              G. Gerig and J.R. MacFall and A.K. Ross and J.
              Provenzale and A. Martin and A.L. Reiss and J.
              Piven",
  title =     "Teasing apart the heterogeneity of autism: Same
              behavior, different brains in toddlers with fragile
              X syndrome and autism",
  journal =   "Journal of Neurodevelopmental Disorders",
  volume =    "1",
  number =    "1",
  pages =     "81--90",
  year =      "2009",
  pmid =      "20700390",
  url =       "http://www.sci.utah.edu/publications/hazlett09/Hazlett_NeurodevelopDisord2009.pdf",
}

@Article{SCI:Haz2011a,
  author =    "H.C. Hazlett and M. Poe and G. Gerig and M. Styner
              and C. Chappell and R.G. Smith and C. Vachet and J.
              Piven",
  title =     "Early Brain Overgrowth in Autism Associated with
              an Increase in Cortical Surface Area Before Age
              2",
  journal =   "Arch of Gen Psych",
  volume =    "68",
  number =    "5",
  pages =     "467--476",
  year =      "2011",
  doi =       "10.1001/archgenpsychiatry.2011.39",
  url =       "http://www.sci.utah.edu/publications/hazlett11/Hazlett_AGP2011.pdf",
}

@InCollection{SCI:Hen2004a,
  author =    "C.S. Henriquez and J.V. Tranquillo and D.M.
              Weinstein and E.W. Hsu and C.R. Johnson",
  title =     "Three-dimensional Propagation in Mathematic
              Models: Integrative Model of the Mouse Heart",
  booktitle = "Cardiac Electrophysiology: From Cell to Bedside",
  pages =     "273--281",
  year =      "2004",
  editor =    "D.P. Zipes and J. Jalife",
  chapter =   "30",
  publisher = "Saunders",
  edition =   "4th edition",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, forward simulation,
              cardiac heart, ncrr",
  url =       "http://www.sci.utah.edu/publications/henriquez04/CardiacElectrophysiologyChapter.pdf",
}

@Article{SCI:Hen2006a,
  author =    "H.B. Henninger and C.J. Underwood and S.A. Maas
              and R.T. Whitaker and J.A. Weiss",
  title =     "Spatial Distribution and Orientation of Dermatan
              Sulfate in Human Medial Collateral Ligament",
  journal =   "Journal of Structural Biology",
  pages =     "(to appear)",
  year =      "2006",
  month =     "December",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/henniger06/henninger_j_struct_biol_2007.pdf",
}

@Article{SCI:Hen2009a,
  author =    "H.B. Henninger and S.A. Maas and J.H. Shepherd and
              S. Joshi and J.A. Weiss",
  title =     "Transversely Isotropic Distribution of Sulfated
              Glycosaminoglycans in Human Medial Collateral
              Ligament: A Quantitative Analysis",
  journal =   "Journal of Structural Biology",
  volume =    "165",
  pages =     "176-183",
  year =      "2009",
  pmid =      "19126431",
  keywords =  "mrl",
  url =       "http://www.sci.utah.edu/publications/henninger09/henninger_jsb_2009.pdf",
}

@Article{SCI:Hen2010a,
  author =    "H.B. Henninger and C.J. Underwood and G.A.
              Ateshian and J.A. Weiss",
  title =     "Effect of sulfated glycosaminoglycan digestion on
              the transverse permeability of medial collateral
              ligament.",
  journal =   "Journal of Biomechanics",
  volume =    "43",
  pages =     "2567--2573",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/henninger10/henninger_j_biomech_2010.pdf",
}

@InProceedings{SCI:Hen2010b,
  author =    "H.B. Henninger and S.P. Reese and A.E. Anderson
              and J.A. Weiss",
  title =     "Validation of computational models in
              biomechanics",
  booktitle = "Proceedings of the Institution of Mechanical
              Engineers, Part H: Journal of Engineering in
              Medicine",
  volume =    "224",
  number =    "H7",
  pages =     "801--812",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/henninger10/henninger_pime_j_eng_med_2010_validation.pdf",
}

@Article{SCI:Hen2011a,
  author =    "C.R. Henak and B.J. Ellis and M.D. Harris and A.E.
              Anderson and C.L. Peters and J.A. Weiss",
  title =     "{R}ole of the acetabular labrum in load support
              across the hip joint",
  journal =   "Journal of Biomechanics",
  volume =    "44",
  number =    "12",
  pages =     "2201-2206",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/henak11/Henak_JBM2011.pdf",
}

@InProceedings{SCI:Hen83a,
  author =    "T.C. Henderson and C.D. Hansen and E. Shilcrat and
               W.S. Fai",
  title =     "Logical Sensor Specification",
  booktitle = "{SPIE} Conference on Intelligent Robots",
  pages =     "578--583",
  year =      "1983",
  month =     "November",
  location =  "Cambridge, Massachusetts",
  note =      "refereed abstract.",
}

@Article{SCI:Hen84a,
  author =    "T.C. Henderson and W.S. Fai and C.D. Hansen",
  title =     "{MKS}: A Multi-sensor Kernel System",
  journal =   "{IEEE} Transactions on Systems, Man and
              Cybernetics",
  volume =    "{SMC}-14",
  number =    "5",
  pages =     "784--791",
  year =      "1984",
  month =     "September/October",
}

@InProceedings{SCI:Hen84b,
  author =    "T.C. Henderson and C.D. Hansen and B. Bhanu",
  title =     "{ASP}: An Algorithm and Sensor Performance
              Evaluation System",
  booktitle = "{PECORA} {IX} Conference on Spatial Information
              Technologies for Remote Sensing Today and
              Tomorrow",
  pages =     "201-207",
  year =      "1984",
  month =     "October",
  location =  "Sioux Falls, S.D.",
}

@InProceedings{SCI:Hen84c,
  author =    "T.C. Henderson and E. Shilcrat and C.D. Hansen",
  title =     "A Fault Tolerant Sensor Scheme",
  booktitle = "International Conference on Pattern Recognition",
  pages =     "663--665",
  year =      "1984",
  month =     "August",
  location =  "Montreal, Canada",
}

@InProceedings{SCI:Hen84d,
  author =    "T.C. Henderson and B. Bhanu and C.D. Hansen",
  title =     "Distributed Control in the Multi-sensor Kernel
              System",
  booktitle = "{SPIE} Conference on Intelligent Robots",
  pages =     "253--255",
  year =      "1984",
  month =     "November",
  location =  "Cambridge, Massachusetts",
  note =      "refereed abstract.",
}

@Article{SCI:Hen85a,
  author =    "T.C. Henderson and C.D. Hansen and W.S. Fai",
  title =     "Organizing Spatial Data for Robotics Systems",
  journal =   "Computers in Industry",
  volume =    "6",
  number =    "5",
  pages =     "331--344",
  year =      "1985",
  month =     "October",
}

@InProceedings{SCI:Hen85b,
  author =    "T.C. Henderson and C.D. Hansen and B. Bhanu",
  title =     "A Framework for Distributed Sensing and Control",
  booktitle = "International Joint Conference on Artificial
              Intelligence",
  pages =     "1106--1109",
  year =      "1985",
  month =     "August",
  location =  "Los Angeles, Ca.",
}

@InProceedings{SCI:Hen85c,
  author =    "T.C. Henderson and C.D. Hansen",
  title =     "A Kernel for Multi-sensor Robotics Systems",
  booktitle = "Proceedings of the {CAD}/{CAM}, Robotics, and
              Automation Institute and Conference",
  pages =     "217--222",
  year =      "1985",
  month =     "February",
  location =  "Tucson, Arizona",
}

@InProceedings{SCI:Hen85d,
  author =    "T.C. Henderson and C.D. Hansen and B. Bhanu",
  title =     "The Synthesis of Logical Sensor Specifications",
  booktitle = "{SPIE} Conference on Intelligent Robots",
  year =      "1985",
  month =     "September",
  location =  "Cambridge, Massachusetts",
  note =      "refereed abstract.",
}

@Article{SCI:Hen86a,
  author =    "T. Henderson and C.D. Hansen and B. Bhanu",
  title =     "The Specification of Distributed Sensing and
              Control",
  journal =   "Journal of Robotic Systems",
  volume =    "2",
  number =    "4",
  pages =     "387--396",
  year =      "1986",
}

@InProceedings{SCI:Hen86b,
  author =    "T.C. Henderson and C.D. Hansen and A. Samal and 
              C.C. Ho and B. Bhanu",
  title =     "{CAGD} Based 3-D Visual Recognition",
  booktitle = "International Conference on Pattern Recognition",
  pages =     "230--232",
  year =      "1986",
  month =     "October",
  location =  "Paris, France",
}

@InCollection{SCI:Hen87a,
  author =    "T. Henderson and C.D. Hansen and Bir Bhanu",
  title =     "Intrinsic Characteristics as the Interface between
              {CAD} and Machine Vision Systems",
  booktitle = "Pattern Recognition Theory and Applications",
  pages =     "461--470",
  year =      "1987",
  editor =    "P. Devijver and J, Kittler",
  series =    "NATO-ASI Series",
  publisher = "Springer-Verlag",
}

@InProceedings{SCI:Hen87b,
  author =    "T.C. Henderson and C.D. Hansen and A. Samal and 
              C.C. Ho and B. Bhanu",
  title =     "{CAD}-Based Robotics",
  booktitle = "{IEEE} Conference on Robotics and Automation",
  pages =     "631--635",
  year =      "1987",
  month =     "May",
  location =  "Raleigh, NC.",
}

@Article{SCI:Hen88a,
  author =    "T.C. Henderson and A. Mitiche and E. Weitz and
              C.D. Hansen",
  title =     "Multisensor Knowledge Systems: Interpreting 3-D
              structure",
  journal =   "International Journal of Robotics Research,
              Special Issue on Multisensor Integration",
  volume =    "7",
  number =    "6",
  pages =     "114--137",
  year =      "1988",
  month =     "December",
}

@InProceedings{SCI:Hen88b,
  author =    "T. Henderson and C.D. Hansen",
  title =     "{CAD}-Based Computer Vision",
  booktitle = "{SPIE} Conference",
  year =      "1988",
  month =     "April",
  location =  "Orlando, Florida",
}

@InProceedings{SCI:Hen89a,
  author =    "T. Henderson and C.D. Hansen and R. Grupen",
  title =     "{CAD}-Based 3-D Object Recognition",
  booktitle = "{IEEE} Systems, Man and Cybernetics Conference",
  pages =     "168--172",
  year =      "1989",
  month =     "November",
  location =  "Boston, Ma.",
}

@Article{SCI:Hen94a,
  author =    "C.S. Henriquez and C.R. Johnson and K.A. Henneberg
              and L.J. Leon and A.E. Pollard.",
  title =     "Large Scale Biomedical Modeling and Simulation:
              From Concepts to Results",
  journal =   "Frontiers in Biomedical Computing",
  year =      "1994",
  editor =    "N. Thakor",
  publisher = "{IEEE} Press",
  address =   "Philadelphia",
  keywords =  ", scientific computing, scientific
              visualization",
}

@TechReport{SCI:Hen95a,
  author =    "C.S. Henriquez and C.R. Johnson and K.A. Henneberg
              L.J. and A.E. Pollard",
  title =     "Large Scale Biomedical Modeling and Simulation:
              From Concepts to Results",
  number =    "UUSCI-1995-001",
  year =      "1995",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              finite elements, computational pde pdes
              computational partial differential equations
              evaporation, cardiac heart, scientific computing,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-1995-001.pdf",
}

@InProceedings{SCI:Her2003a,
  author =    "W. Herrera-Jimenez and W. Correa and C.T. Silva
              and A. Baptista",
  title =     "Visualizing Spatial and Temporal Variability in
              Coastal Observatories",
  booktitle = "Proceedings of the 14th IEEE Visualization 2003
              (VIS'03)",
  pages =     "75",
  year =      "2003",
  isbn =      "0-7695-2030-8",
  url =       "http://www.sci.utah.edu/publications/herrera-jimenez03/vis2003.pdf",
}

@Article{SCI:Hes2008a,
  author =    "J.S. Hesthaven and R.M. Kirby",
  title =     "Filtering in Legendre Spectral Methods",
  journal =   "Mathematics of Computation",
  volume =    "77",
  number =    "263",
  pages =     "1425--1452",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/hesthaven08/Hesthaven_FiltLegendreSpecMeth.pdf",
}

@TechReport{SCI:Hij2008a,
  author =    "Y. Hijazi and A. Knoll and M. Schott and A.
              Kensler and C.D. Hansen and H. Hagen",
  title =     "CSG Operations of Arbitrary Primitives with
              Interval Arithmetic and Real-Time Ray Tracing",
  number =    "UUSCI-2008-008",
  year =      "2008",
  institution = "University of Utah School of Computing",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2008-008.pdf",
}

@InProceedings{SCI:Hij2010a,
  author =    "Y. Hijazi and A. Knoll and M. Schott and A.
              Kensler and C.D. Hansen and H. Hagen",
  title =     "CSG Operations of Arbitary Primitives with
              Interval Arithmetic and Real-Time Ray Casting",
  journal =   "DROPS - Dagstuhl Research Online Publication
              Server",
  pages =     "(published online)",
  year =      "2010",
  publisher = "Schloss Dagstuhl - Leibniz-Zentrum fuer
              Informatik",
  keywords =  "Implicit Surface, Constructive Solid Geometry,
              Interval Arithmetic, Ray Casting, Data processing
              Computer science",
  url =       "http://www.sci.utah.edu/publications/hijazi10/Hijazi_CSG-Operations2010.pdf",
}

@Article{SCI:Hin2009a,
  author =    "J. Hinkle and P.T. Fletcher and B. Wang and B.
              Salter and S. Joshi",
  title =     "4D MAP image reconstruction incorporating organ
              motion",
  journal =   "Information Processing in Medical Imaging",
  volume =    "5636",
  pages =     "676--687",
  year =      "2009",
  series =    "Lecture Notes in Computer Science LNCS",
  pmid =      "19694303",
  url =       "http://www.sci.utah.edu/publications/hinkle09/Hinkle_LCNS2009.pdf",
}

@InProceedings{SCI:Hin93a,
  author =    "P. Hinker and C.D. Hansen",
  title =     "Geometric Optimization",
  booktitle = "Visualization 1993",
  pages =     "189--195",
  year =      "1993",
  month =     "October",
  location =  "San Jose, Ca.",
}

@InProceedings{SCI:Hod1995a,
  author =    "D.C. Hodgson and P.K. Jimack and P. Selwood and M.
              Berzins",
  title =     "Scalable, Parallel Generation of Partitioned
              Unstructured Meshes",
  booktitle = "Parallel C.F.D. -- Implementations and Results
              using Parallel Computers",
  pages =     "665-672",
  year =      "1995",
  editor =    "A. Ecer, J. Periaux, N. Satufoka and S. Taylor",
  month =     "June",
  location =  "Parallel CFD Conference 1995, pasadena,
              California",
  isbn =      "0-444 823220",
  url =       "http://www.sci.utah.edu/publications/hodgson95/scalable-parallel-generation.pdf",
}

@Article{SCI:Hog1999a,
  author =    "R.E. Hogan and K.E. Mark and L. Wang and S.C.
              Joshi and M.I. Miller and R.D. Bucholz",
  title =     "MR Imaging Deformation-Based Segmentation of the
              Hippocampus in Patients with Mesial Temporal
              Sclerosis and Temporal Lobe Epilepsy",
  journal =   "Epilepsia",
  volume =    "40",
  number =    "7",
  year =      "1999",
}

@Article{SCI:Hog2000a,
  author =    "R.E. Hogan and K.E. Mark and L. Wang and S. Joshi
              and M.I. Miller and R. Bucholz",
  title =     "Mesial Temporal Sclerosis and Temporal Lobe
              Epilepsy: MR Imaging Deformation-Based Segmentation
              of the Hippocampus in Five Patients",
  journal =   "Radiology",
  volume =    "216",
  number =    "1",
  pages =     "291--297",
  year =      "2000",
  month =     "July",
}

@Article{SCI:Hog2000b,
  author =    "R.E. Hogan and K.E. Mark and I. Choudhuri and L.
              Wang and S. Joshi and M.I. Miller and R. Bucholz",

  title =     "Magnetic Resonance Imaging Deformation-Based
              Segmentation of the Hippocampus in Patients with
              Mesial Temporal Sclerosis and Temporal Lobe
              Epilepsy",
  journal =   "J Digit Imaging",
  volume =    "13",
  number =    "2 (Suppl. 1)",
  pages =     "217--218",
  year =      "2000",
  month =     "May",
}

@Article{SCI:Hog2000c,
  author =    "R.E. Hogan and R.D. Bucholz and I. Choudhuri and
              K.E. Mark and C.S. Butler and S. Joshi",
  title =     "Shape-analysis of hippocampal surface structure in
              patients with unilateral mesial temporal
              sclerosis",
  journal =   "Journal of Digital Imaging",
  volume =    "13",
  number =    "2",
  pages =     "39--42",
  year =      "2000",
}

@Article{SCI:Hog2003a,
  author =    "R.E. Hogan and R.D. Bucholz and S. Joshi",
  title =     "Hippocampal Deformation-Based Shape Analysis in
              Epilepsy and Unilateral Mesial Temporal
              Sclerosis",
  journal =   "Epilepsia",
  volume =    "44",
  number =    "6",
  pages =     "800--806",
  year =      "2003",
  month =     "June",
}

@InProceedings{SCI:Hog2011a,
  author =    "L. Hogrebe and A. Paiva and E. Jurrus and C.
              Christensen and M. Bridge and J.R. Korenberg and T.
              Tasdizen",
  title =     "Trace Driven Registration of Neuron Confocal
              Microscopy Stacks",
  booktitle = "IEEE International Symposium on Biomedical Imaging
              (ISBI)",
  pages =     "1345--1348",
  year =      "2011",
  doi =       "10.1109/ISBI.2011.5872649",
  url =       "http://www.sci.utah.edu/publications/hogrebe11/Hogrebe_ISBI2011.pdf",
}

@Article{SCI:Hop2004a,
  author =    "B. Hopenfeld and J.G. Stinstra and R.S. MacLeod",
  title =     "Mechanism for {ST} Depression Associated with
              Contiguous Subendocardial Ischemia",
  journal =   j-JCE,
  volume =    "15",
  number =    "10",
  pages =     "1200--1206",
  year =      "2004",
  keywords =  "cardiac heart, ncrr",
  url =       "http://www.sci.utah.edu/publications/hopenfeld04/ischemiarev.pdf",
}

@Article{SCI:Hop2005a,
  author =    "B. Hopenfeld and J.G. Stinstra and R.S. MacLeod",
  title =     "The Effect of Conductivity on {ST}-Segment
              Epicardial Potentials Arising from Subendocardial
              Ischemia",
  journal =   j-ABE,
  volume =    "33",
  number =    "6",
  pages =     "751--763",
  year =      "2005",
  keywords =  "cardiac heart, ncrr",
  url =       "http://www.sci.utah.edu/publications/hopenfeld05/condsensrev.pdf",
}

@InProceedings{SCI:How2008a,
  author =    "B. Howe and P. Lawson and R. Bellinger and J.
              Freire and E. Anderson and E. Santos and C.E.
              Scheidegger and A. Baptista and C.T. Silva",
  title =     "End-to-End eScience: Integrating Workflow, Query,
              Visualization, and Provenance at an Ocean
              Observatory",
  booktitle = "Proceedings of the 2008 Fourth IEEE International
              Conference on eScience",
  pages =     "127--134",
  year =      "2008",
  keywords =  "vistrails, provenance, workflows, workflow
              management",
  url =       "http://www.sci.utah.edu/publications/howe08/vistrails-escience2008.pdf",
}

@Article{SCI:Hua2007a,
  author =    "X. Huang and Y.Z. Lee and M. McKeown and G. Gerig
              and H. Gu and W. Lin and M.M. Lewis and S. Ford and
              A.I. Troster and D.R. Weinberger and Styner",
  title =     "Asymmetrical ventricular enlargement in
              Parkinson's Disease",
  journal =   "Movement Disorders",
  volume =    "22",
  number =    "11",
  pages =     "1657--1660",
  year =      "2007",
  month =     "August 15",
  keywords =  "cardiac, heart, parkinsons disease",
  url =       "http://www.sci.utah.edu/publications/huang07/Huang_MovDisord_Aug2007.pdf",
}

@InProceedings{SCI:Hua2012a,
  author =    "J. Huang and W. Pei and C. Wen and G. Chen and W.
              Chen and H. Bao",
  title =     "Output-Coherent Image-Space LIC for Surface Flow
              Visualization",
  booktitle = "Proceedings of the IEEE Pacific Visualization
              Symposium 2012",
  pages =     "(to appear)",
  year =      "2012",
  location =  "Korea",
  url =       "http://www.sci.utah.edu/publications/huang12/Huang_ConsistentLIC_PacificVis2012.pdf",
}

@InCollection{SCI:Hub2003a,
  author =    "M.E. Hubbard and M. Berzins",
  title =     "A Positivity Preserving Finite Element Method for
              Hyperbolic Partial Differential Equations",
  booktitle = "Computational Fluid Dynamics 2002",
  pages =     "205--210",
  year =      "2003",
  editor =    "S. Armfield, P. Morgan and K. Srinivas",
  publisher = "Springer-Verlag",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational pde pdes computational partial
              differential equations",
  url =       "http://www.sci.utah.edu/publications/hubbard03/Hubbard_ICCFD2003.pdf",
}

@InProceedings{SCI:Hwa2003a,
  author =    "D. Hwang and O. Portniaguine and S. Nagarajan and 
              C.R. Johnson and K. Sekihara",
  title =     "Minimum Support {MEG} (Magnetoencephalography)
              Imaging: Study on Effects of Noise, Discretization,
              Depth, and Separation of Multiple Sources",
  booktitle = "World Congress on Medical Physics and Biomedical
              Engineering",
  pages =     "(Accepted)",
  year =      "2003",
  month =     "August",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements, MEG,
              scientific computing, , meg",
}

@InProceedings{SCI:Hwa2003b,
  author =    "D. Hwang and S. Nagarajan and O. Portniaguine and 
              K. Sekihara",
  title =     "Multiresolution {MEG} (Magnetoencephalography)
              Imaging By Adaptive Beamformer Scanning",
  booktitle = "25th Annual International Conference of the {IEEE}
              Engineering In Medicine And Biology Society",
  pages =     "(Accepted)",
  year =      "2003",
  month =     "September",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements, ip
              image processing signal processing, MEG, scientific
              computing, Beamformer, meg, beamformer",
}

@Book{SCI:Iba2003a,
  author =    "L. Ibanez and W. Schroeder and L. Ng and J.
              Cates",
  title =     "The ITK Software Guide",
  year =      "2003",
  publisher = "Kitware, Inc.",
  isbn =      "1-930934-10-6",
  keywords =  "ip image processing signal processing,
              segmentation, insight itk",
  url =       "http://www.sci.utah.edu/publications/ibanez03/ItkSoftwareGuide.pdf",
}

@InProceedings{SCI:Iki2001,
  author =    "M. Ikits and J.D. Brederson and C.D. Hansen and
              J.M. Hollerbach",
  title =     "An Improved Calibration Framework for
              Electromagnetic Tracking Devices",
  booktitle = c-VR2001,
  pages =     "63--70",
  year =      "2001",
  address =   "Yokohama, Japan,",
  month =     "Mar",
  keywords =  "vr virtual reality haptics, uve, scientific
              visualization, haptics",
  url =       "http://www.sci.utah.edu/publications/ikits01/vr01.pdf",
}

@InProceedings{SCI:Iki2001b,
  author =    "M. Ikits and J.D. Brederson and C.D. Hansen and 
              J.M. Hollerbach",
  title =     "Calibration of 6DOF Electromagnetic Tracking
              Devices",
  booktitle = "{IEEE} VR2001",
  pages =     "63--70",
  year =      "2001",
  location =  "Japan",
  keywords =  "vr virtual reality haptics, uve",
  url =       "http://www.sci.utah.edu/publications/ikits01/Ikits_VR2001.pdf",
}

@InProceedings{SCI:Iki2003a,
  author =    "M. Ikits and C.D. Hansen and C.R. Johnson",
  title =     "A Comprehensive Calibration and Registration
              Procedure for the Visual Haptic Workbench",
  booktitle = "Proceedings of the Ninth Eurographics Workshop on
              Virtual Environments",
  pages =     "247--254",
  year =      "2003",
  address =   "Zurich, Switzerland,",
  month =     "May",
  keywords =  "vr virtual reality haptics, uve, Visualization,
              haptics, callibration, visualization",
  url =       "http://www.sci.utah.edu/publications/ikits03/Ikits_EGVE_03.pdf",
}

@InProceedings{SCI:Iki2003b,
  author =    "M. Ikits and J.D. Brederson and C.D. Hansen and 
              C.R. Johnson",
  title =     "A Constraint-Based Technique for Haptic Volume
              Exploration",
  booktitle = "Proceedings {IEEE} Visualization 2003",
  pages =     "263--269",
  year =      "2003",
  month =     "October",
  location =  "Seattle, WA",
  keywords =  "tensor field methods, diffusion tensor imaging, vr
              virtual reality haptics, uve, scientific
              visualization, haptics",
}

@InCollection{SCI:Iki2004a,
  author =    "M. Ikits and J.M. Kniss and A.E. Lefohn and C.D.
              Hansen",
  title =     "Volume Rendering Techniques",
  booktitle = "{GPU} Gems: Programming Techniques, Tipsand Tricks
              for Real-Time Graphics",
  pages =     "667--692",
  year =      "2004",
  editor =    "Randima Fernando",
  publisher = "Addison Wesley",
  keywords =  "scalar field methods, volume rendering",
}

@InCollection{SCI:Iki2005a,
  author =    "M. Ikits and J.D. Brederson",
  title =     "The Visual Haptic Workbench",
  booktitle = "The Visualization Handbook",
  pages =     "431--447",
  year =      "2005",
  editor =    "C.D. Hansen and C.R. Johnson",
  publisher = "Elsevier",
  isbn =      "0-12-387582-X",
  keywords =  "vr virtual reality haptics, uve",
  url =       "http://www.sci.utah.edu/publications/ikits05/ch22_ikits.pdf",
}

@PhdThesis{SCI:Iki2007a,
  author =    "M. Ikits",
  title =     "Interactive Exploration of Volumetric Data Sets
              With a Combined Visual and Haptic Interface",
  year =      "2007",
  school =    "University of Utah School of Computing",
  note =      "Ph.D. Thesis",
  keywords =  "visual haptic workbench, vr virtual reality
              haptics, Ph.D. Thesis, ph.d. thesis",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-005.pdf",
}

@Misc{SCI:ImageVis,
  author =    "CIBC",
  year =      "2011",
  note =      "ImageVis3D: A SCIRun Power App for interactive
              visualization of vary large image volumes.
              Scientific Computing and Imaging Institute (SCI),
              Download from: http://www.imagevis3d.org",
  keywords =  "bioimage, ncrr",
}

@InProceedings{SCI:Ion2005a,
  author =    "I. Ionescu and J. Guilkey and M. Berzins and R.M.
              Kirby and J.A. Weiss",
  title =     "Computational Simulation of Penetrating Trauma in
              Biological Soft Tissues Using the Material Point
              Method",
  booktitle = "Proceedings, Medicine Meets Virtual Reality",
  volume =    "13",
  pages =     "213--218",
  year =      "2005",
  editor =    "James D Westwood et al.",
  publisher = "IOS Press",
  isbn =      "1-58603-498-7",
  keywords =  "computational mechanics, computational
              biomechanics, mpm material point method",
  url =       "http://www.sci.utah.edu/publications/ionescu05/ionescu_mmvr_2005.pdf",
}

@Article{SCI:Ion2006a,
  author =    "I. Ionescu and J.E. Guilkey and M. Berzins and
              R.M. Kirby and J.A. Weiss",
  title =     "Simulation of Soft Tissue Failure Using the
              Material Point Method",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "128",
  number =    "6",
  pages =     "917--924",
  year =      "2006",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/ionescu06/ionescu_jbme_2006.pdf",
}

@Article{SCI:Iri2011a,
  author =    "A. Irimia and M.C. Chambers and J.R. Alger and M.
              Filippou and M.W. Prastawa and B. Wang and D. Hovda
              and G. Gerig and A.W. Toga and R. Kikinis and P.M.
              Vespa and J.D. Van Horn",
  title =     "Comparison of acute and chronic traumatic brain
              injury using semi-automatic multimodal segmentation
              of MR volumes",
  journal =   "Journal of Neurotrauma",
  volume =    "28",
  number =    "11",
  pages =     "2287--2306",
  year =      "2011",
  month =     "November",
  pmid =      "21787171",
  keywords =  "namic",
  url =       "http://www.sci.utah.edu/publications/irimia11/Irimia_JNeuro2011.pdf",
}

@Article{SCI:Iri2012a,
  author =    "A. Irimia and M.C. Chambers and C.M. Torgerson and
              M. Filippou and D.A. Hovda and J.R. Alger and G.
              Gerig and A.W. Toga and P.M. Vespa and R. Kikinis
              and J.D. Van Horn",
  title =     "Patient-tailored connectomics visualization for
              the assessment of white matter atrophy in traumatic
              brain injury",
  title_url =
              "http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract",

  journal =   "Frontiers in Neurotrauma",
  year =      "2012",
  note =     
              "http://www.frontiersin.org/neurotrauma/10.3389/fneur.2012.00010/abstract",

  doi =       "10.3389/fneur.2012.00010",
  url =       "http://www.sci.utah.edu/publications/irimia12/Irimia_FNeuro2012.pdf",
}

@Article{SCI:Isa2009a,
  author =    "B.M. Isaacson and J.G. Stinstra and R.S. MacLeod
              and J.B. Webster and J.P. Beck and R.D. Bloebaum",

  title =     "Bioelectric Analyses of an Osseointegrated
              Intelligent Implant Design System for Amputees",
  title_url = "http://www.jove.com/index/Details.stp?ID=1237",
  journal =   "JoVE",
  volume =    "29",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/isaacson09/JoVE_Protocol_1237.pdf",
}

@Article{SCI:Isa2010a,
  author =    "B.M. Isaacson and J.G. Stinstra and R.S. MacLeod
              and P.F. Pasquina and R.D. Bloebaum",
  title =     "Developing a Quantitative Measurement System for
              Assessing Heterotopic Ossification and Monitoring
              the Bioelectric Metrics from Electrically Induced
              Osseointegration in the Residual Limb of Service
              Members",
  journal =   "Annals of Biomedical Engineering",
  volume =    "38",
  number =    "9",
  pages =     "2968-–2978",
  year =      "2010",
  pmid =      "20458630",
  keywords =  "cibc",
  url =       "http://www.sci.utah.edu/publications/isaacson10/Isaacson_ABE2010a.pdf",
}

@Article{SCI:Isa2011a,
  author =    "B.M. Isaacson and J.G. Stinstra and R.D. Bloebaum
              and COL P.F. Pasquina and R.S. MacLeod",
  title =     "Establishing Multiscale Models for Simulating
              Whole Limb Estimates of Electric Fields for
              Osseointegrated Implants",
  journal =   "IEEE Transactions on Biomedical Engineering",
  volume =    "58",
  number =    "10",
  pages =     "2991--2994",
  year =      "2011",
  pmid =      "21712151",
  url =       "http://www.sci.utah.edu/publications/isaacson11/Isaacson_TBE2011.pdf",
}

@Article{SCI:Isa2011b,
  author =    "S.A. Isaacson and R.M. Kirby",
  title =     "Numerical Solution of Linear Volterra Integral
              Equations of the Second Kind with Sharp
              Gradients",
  journal =   "Journal of Computational and Applied
              Mathematics",
  volume =    "235",
  number =    "14",
  pages =     "4283--4301",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/isaacson11/Isaacson_JCAM2011.pdf",
}

@TechReport{SCI:Itk2000,
  author =    "M. Ikits",
  title =     "Coregistration of Pose Measurement Devices Using
              Nonlinear Least Squares Parameter Estimation",
  number =    "UUCS-00-018",
  year =      "2000",
  institution = "University of Utah",
  type =      "School of Computing Technical Report",
  keywords =  "vr virtual reality haptics, scientific
              visualization, haptics",
  url =       "http://www.sci.utah.edu/publications/ikits00/UUCS-00-018.ps",
  url =       "http://www.sci.utah.edu/publications/ikits00/UUCS-00-018.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ikits00/UUCS-00-018.pdf",
}

@InProceedings{SCI:Iye2010b,
  author =    "S.K. Iyer and E. DiBella and T. Tasdizen",
  title =     "Edge enhanced spatio-temporal constrained
              reconstruction of undersampled dynamic contrast
              enhanced radial MRI",
  booktitle = "IEEE International Symposium on Biomedical Imaging
              (ISBI): From Nano to Macro",
  pages =     "704--707",
  year =      "2010",
  doi =       "10.1109/ISBI.2010.5490077",
  url =       "http://www.sci.utah.edu/publications/iyer10/Iyer_ISBI2010.pdf",
}

@TechReport{SCI:Ize2006a,
  author =    "T. Ize and I. Wald and C. Robertson and S.G.
              Parker",
  title =     "An Evaluation of Parallel Grid Construction for
              Ray Tracing Dynamic Scenes",
  number =    "UUSCI-2006-025",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-025.pdf",
}

@InProceedings{SCI:Ize2006b,
  author =    "T. Ize and I. Wald and C. Robertson and S.G.
              Parker",
  title =     "An Evaluation of Parallel Grid Construction for
              Ray Tracing Dynamic Scenes",
  booktitle = "Proceedings of the 2006 IEEE Symposium on
              Interactive Ray Tracing",
  volume =    "1",
  pages =     "47--55",
  year =      "2006",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt",
  url =       "http://www.sci.utah.edu/publications/thiago06/parallelBuild.pdf",
}

@InProceedings{SCI:Ize2006c,
  author =    "T. Ize and I. Wald and S.G. Parker",
  title =     "Asynchronous BVH Construction for Ray Tracing
              Dynamic Scenes",
  number =    "UUSCI-2006-034",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "rtrt real-time ray tracing, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-034.pdf",
}

@InProceedings{SCI:Ize2007a,
  author =    "T. Ize and I. Wald and S.G. Parker",
  title =     "Asynchronous BVH Construction for Ray Tracing
              Dynamic Scenes on Parallel Multi-Core
              Architectures",
  booktitle = "Proceedings of the 2007 Eurographics Symposium on
              Parallel Graphics and Visualization",
  pages =     "101--108",
  year =      "2007",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/ize07/async.pdf",
}

@InProceedings{SCI:Ize2007b,
  author =    "T. Ize and P. Shirley and S.G. Parker",
  title =     "Grid Creation Strategies for Efficient Ray
              Tracing",
  booktitle = "Proceedings of the 2007 IEEE/Eurographics
              Symposium on Interactive Ray Tracing",
  pages =     "27--32",
  year =      "2007",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter",
  url =       "http://www.sci.utah.edu/publications/ize07/rgrid.pdf",
}

@InProceedings{SCI:Ize2008a,
  author =    "T. Ize and I. Wald and S.G. Parker",
  title =     "Ray Tracing with the BSP Tree",
  booktitle = "Proceedings of the {IEEE} Symposium on Interactive
              Ray Tracing, 2008",
  pages =     "(accepted)",
  year =      "2008",
  keywords =  "rt, ray tracing, bsp tree",
  url =       "http://www.sci.utah.edu/publications/ize08/BSP_RT08.pdf",
}

@InProceedings{SCI:Ize2011a,
  author =    "T. Ize and C.D. Hansen",
  title =     "RTSAH Traversal Order for Occlusion Rays",
  booktitle = "Computer Graphics Forum (Proceedings of
              Eurographics 2011)",
  volume =    "30",
  number =    "2",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/ize11/Ize_rtsah2011.pdf",
}

@InProceedings{SCI:Ize2011b,
  author =    "T. Ize and C. Brownlee and C.D. Hansen",
  title =     "Real-Time Ray Tracer for Visualizing Massive
              Models on a Cluster",
  booktitle = "Proceedings of the 2011 Eurographics Symposium on
              Parallel Graphics and Visualization",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/ize11/Ize_EGPGV2011.pdf",
}

@TechReport{SCI:Jad2010a,
  author =    "S. Jadhav and H. Bhatia and P.-T. Bremer and J.A.
              Levine and L.G. Nonato and V. Pascucci",
  title =     "Consistent Approximation of Local Flow Behavior
              for 2D Vector Fields using Edge Maps",
  number =    "UUSCI-2010-004",
  year =      "2010",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2010-004.pdf",
}

@Article{SCI:Jad2012a,
  author =    "S. Jadhav and H. Bhatia and P.-T. Bremer and J.A.
              Levine and L.G. Nonato and V. Pascucci",
  title =     "Consistent Approximation of Local Flow Behavior
              for 2D Vector Fields",
  journal =   "Topological Methods in Data Analysis and
              Visualization II. Mathematics and Visualization",
  number =    "3",
  pages =     "141--159",
  year =      "2012",
  doi =       "10.1007/978-3-642-23175-9 10",
  url =       "http://www.sci.utah.edu/publications/jadhav12/Jadhav_Topo2012_Local2DFlow.pdf",
}

@Article{SCI:Jeo2003a,
  author =    "J. Jeon and A.E. Lefohn and G. A. Voth",
  title =     "An Improved Polarflex Water Model",
  journal =   "The Journal of Chemical Physics",
  volume =    "118",
  number =    "16",
  pages =     "7504--7518",
  year =      "2003",
  keywords =  "cfd computational fluid dynamics, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/jeon03/prePrintPF2.pdf",
}

@InProceedings{SCI:Jeo2004a,
  author =    "Won-Ki Jeong and Tolga Tasdizen and Ross
              Whitaker",
  title =     "Anisotropic Diffusion of Height Field Data using
              Multigrid Solver on {GPU}",
  booktitle = "Proceedings {ACM} Workshop on General Purpose
              Computing on Graphics Processors, 2004",
  year =      "2004",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/wkjeong04/gp04_final.pdf",
}

@InProceedings{SCI:Jeo2006a,
  author =    "W-K. Jeong and R.T. Whitaker and M. Dobin",
  title =     "Interactive 3D Seismic Fault Detection on the
              Graphics Hardware",
  journal =   "Proceedings of the 2006 International Workshop on
              Volume Graphics",
  pages =     "111--118",
  year =      "2006",
  keywords =  "geophysics geology, fault detection, seismology",
  url =       "http://www.sci.utah.edu/publications/wkjeong06/vg06-jeong.pdf",
}

@InProceedings{SCI:Jeo2007a,
  author =    "W.-K. Jeong and P.T. Fletcher and R. Tao and R.T.
              Whitaker",
  title =     "Interactive Visualization of Volumetric White
              Matter Connectivity in DT-MRI Using a
              Parallel-Hardware Hamilton-Jacobi Solver",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (Proceedings of IEEE Visualization
              2007)",
  volume =    "13",
  number =    "6",
  pages =     "1480--1487",
  year =      "2007",
  pmid =      "17968100",
  keywords =  "volume rendering, diffusion tensor imaging,
              parallel visualization",
  url =       "http://www.sci.utah.edu/publications/jeong07/Jeong_vis07.pdf",
}

@Article{SCI:Jeo2008a,
  author =    "W.-K. Jeong and R.T. Whitaker",
  title =     "A Fast Iterative Method for Eikonal Equations",
  journal =   "SIAM Journal on Scientific Computing",
  volume =    "30",
  number =    "5",
  pages =     "2512-2534",
  year =      "2008",
  doi =       "10.1137/060670298",
  url =       "http://www.sci.utah.edu/publications/jeong08/Jeong_SIAM2008.pdf",
}

@InProceedings{SCI:Jeo2009a,
  author =    "W.-K. Jeong and J. Beyer and M. Hadwiger and A.
              Vazquez and H. Pfister and R.T. Whitaker",
  title =     "Scalable and Interactive Segmentation and
              Visualization of Neural Processes in EM Datasets",

  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics, Proceedings of the 2009 IEEE
              Visualization Conference",
  volume =    "15",
  number =    "6",
  pages =     "1505--1514",
  year =      "2009",
  month =     "Sept/Oct",
  url =       "http://www.sci.utah.edu/publications/jeong09/Jeong_TVCG2009.pdf",
}

@InProceedings{SCI:Jia2010a,
  author =    "F. Jiao and J.M. Phillips and J.G. Stinstra and J.
              Kueger and R. Varma and E. Hsu and J. Korenberg and
              C.R. Johnson",
  title =     "Metrics for Uncertainty Analysis and Visualization
              of Diffusion Tensor Images",
  booktitle = "Proceedings of the 5th international conference on
              Medical imaging and augmented reality (MIAR)",
  pages =     "179--190",
  year =      "2010",
  publisher = "Springer-Verlag",
  address =   "Berlin, Heidelberg",
  month =     "September",
  location =  "Beijing, China",
  url =       "http://www.sci.utah.edu/publications/jiao10/Jiao_fiber-uncertainty.pdf",
}

@Article{SCI:Jia2011a,
  author =    "F. Jiao and Y. Guv and S. Joshi and C.R.
              Johnson",
  title =     "Detection of crossing white matter fibers with
              high-order tensors and rank-k decompositions",
  journal =   "Information Processing in Medical Imaging",
  volume =    "6801",
  pages =     "538--549",
  year =      "2011",
  series =    "Lecture Notes in Computer Science (LNCS)",
  doi =       "10.1007/978-3-642-22092-0_44",
  url =       "http://www.sci.utah.edu/publications/jiao11/Jiao_TensorDecompositions.pdf",
}

@InProceedings{SCI:Jia2012a,
  author =    "F. Jiao and J.M. Phillips and Y. Gur and C.R.
              Johnson",
  title =     "Uncertainty Visualization in HARDI based on
              Ensembles of ODFs",
  booktitle = "Proceedings of the 5th IEEE Pacific Visualization
              Symposium (PacificVis 2012)",
  pages =     "(accepted)",
  year =      "2012",
  month =     "February",
  keywords =  "netl",
  url =       "http://www.sci.utah.edu/publications/jiao12/Jiao_PacificVis2012.pdf",
}

@Article{SCI:Jim2002a,
  author =    "P.K. Jimack and R. Mahmood and M.A. Walkley and M.
              Berzins",
  title =     "A Multilevel Approach for Obtaining Locally
              Optimal Finite Element Meshes",
  journal =   j-AES,
  volume =    "33",
  pages =     "403--415",
  year =      "2002",
  keywords =  "finite elements",
  url =       "http://www.sci.utah.edu/publications/jimack02/JMWB00.pdf",
}

@Article{SCI:Jim2010a,
  author =    "P.K. Jimack and R.M. Kirby",
  title =     "Towards the Development on an h-p-Refinement
              Strategy Based Upon Error Estimate Sensitivity",
  journal =   "Computers and Fluids",
  pages =     "(accepted)",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/jimack10/ICFDpaperJimackKirbyRevised_abstract.pdf",
}

@Article{SCI:Jim2011a,
  author =    "P.K. Jimack and R.M. Kirby",
  title =     "Towards the Development on an h-p-Refinement
              Strategy Based Upon Error Estimate Sensitivity",
  journal =   "Computers and Fluids",
  volume =    "46",
  number =    "1",
  pages =     "277--281",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/jimack11/Jimack_CF2011.pdf",
}

@Misc{SCI:Joh2000a,
  author =    "C.R. Johnson",
  title =     "Computer Simulation and Visualization in
              Medicine",
  year =      "2000",
  institution = "University of Utah",
  howpublished = "Gould Distinguished Annual Lecture",
  keywords =  ", Cardiology, Neuroscience, Cardiac Defibrillation
              Device Design, Medical Imaging, Computer Science",

}

@InProceedings{SCI:Joh2000b,
  author =    "C.R. Johnson and S.G. Parker and D. Weinstein",
  title =     "Large-Scale Computational Science Applications
              Using the {SCIR}un Problem Solving Environment",
  booktitle = c-ISC2000,
  year =      "2000",
  keywords =  "ncrr, scirun, scientific computing, scientific
              visualization",
  url =       "http://www.sci.utah.edu/publications/crj00/super00_final.pdf",
}

@Article{SCI:Joh2001a,
  author =    "C.R. Johnson and D. Brederson and C.D. Hansen and
              M. Ikits and G. Kindlmann and Y. Livnat and S.G.
              Parker and D.M. Weinstein and R.T. Whitaker",
  title =     "Computational Field Visualization",
  journal =   "Computer Graphics",
  volume =    "35",
  number =    "4",
  pages =     "5--9",
  year =      "2001",
  keywords =  "ncrr",
  url =       "http://www.sci.utah.edu/publications/crj01/crj_CFV2001.pdf",
}

@InCollection{SCI:Joh2001b,
  author =    "C.R. Johnson and Y. Livnat and L. Zhukov and D.
              Hart and G. Kindlmann",
  title =     "Computational Field Visualization",
  booktitle = "Mathematics Unlimited -- 2001 and Beyond",
  volume =    "2",
  pages =     "605--630",
  year =      "2001",
  editor =    "B. Engquist and W. Schmid",
  publisher = "Springer-Verlag",
  keywords =  "cfd computational fluid dynamics, computational
              pde pdes computational partial differential
              equations evaporation, scalar field methods, vector
              field methods, tensor field methods, scirun,
              biopse, uintah, scirun fusion, scientific
              visualization, scientific computing, pse, problem
              solving environment",
  url =       "http://www.sci.utah.edu/publications/math2000/paper_final.pdf",
  url =       "http://www.sci.utah.edu/publications/math2000/paper_final.ps",
  url =       "http://www.sci.utah.edu/publications/math2000/paper_final.ps.gz",
}

@InCollection{SCI:Joh2001c,
  author =    "C.R. Johnson and M. Mohr and U. Ruede and A.
              Samsonov and K. Zyp",
  title =     "Multilevel Methods for Inverse Bioelelectric Field
              Problems",
  booktitle = "Lecture Notes in Computational Science and
              Engineering - Multiscale and Multiresolution
              Methods: Theory and Applications",
  volume =    "20",
  pages =     "331--346",
  year =      "2001",
  editor =    "T.J. Barth, T.F. Chan, R. Haimes",
  publisher = "Springer-Verlag Publishing",
  address =   "Heidelberg",
  month =     "October",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scirun, biopse, scientific computing",
  url =       "http://www.sci.utah.edu/publications/yosemite/paper_final.ps",
}

@InCollection{SCI:Joh2001d,
  author =    "C.R. Johnson",
  title =     "Adaptive Finite Element and Local Regularization
              Methods for the Inverse {ECG} Problem",
  booktitle = "Inverse Problems in Electrocardiology",
  volume =    "5",
  pages =     "51--88",
  year =      "2001",
  editor =    "Peter Johnston",
  series =    "Advances in Computational Biomedicine",
  publisher = "{WIT} Press",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions finite elements,
              inverse eeg, scirun, biopse, cardiac heart,
              scientific computing",
  url =       "http://www.sci.utah.edu/publications/crj01/inverse_ecg99.ps.gz",
  url =       "http://www.sci.utah.edu/publications/crj01/inverse_ecg99.ps",
}

@Article{SCI:Joh2001e,
  author =    "C.R. Johnson",
  title =     "Computational Bioimaging for Medical Diagnosis and
              Treatment",
  journal =   "Communications of the {ACM}",
  volume =    "44",
  number =    "3",
  pages =     "74--76",
  year =      "2001",
  month =     "March",
  keywords =  "pse pses problem solving envoronment, bioelectric
              fields",
  url =       "http://www.sci.utah.edu/publications/crj01/Johnson-ACM-2001.pdf",
}

@Article{SCI:Joh2002a,
  author =    "C.R. Johnson and S.G. Parker and D. Weinstein and
              S. Heffernan",
  title =     "Component-Based Problem Solving Environments for
              Large-Scale Scientific Computing",
  journal =   j-CCPE,
  volume =    "14",
  pages =     "1337--1349",
  year =      "2002",
  keywords =  "ncrr, SCIRun, scirun",
  url =       "http://www.sci.utah.edu/publications/crj02/grids01.pdf",
}

@Article{SCI:Joh2003a,
  author =    "C.R. Johnson and A.R. Sanderson",
  title =     "A Next Step: Visualizing Errors and Uncertainty",
  journal =   "{IEEE} Computer Graphics and Applications",
  volume =    "23",
  number =    "5",
  pages =     "6--10",
  year =      "2003",
  editor =    "Theresa-Marie Rhyne",
  month =     "September/October",
  keywords =  "cfd computational fluid dynamics, scientific
              computing, error visualization",
  url =       "http://www.sci.utah.edu/publications/crj03/g5visv-lo.pdf",
}

@Article{SCI:Joh2004a,
  author =    "C.R. Johnson",
  title =     "Top Scientific Visualization Research Problems",
  journal =   "{IEEE} Computer Graphics and Applications:
              Visualization Viewpoints",
  volume =    "24",
  number =    "4",
  pages =     "13--17",
  year =      "2004",
  month =     "July/August",
  keywords =  "ncrr",
  url =       "http://www.sci.utah.edu/publications/crj04/Vis_Viewpoints04.pdf",
}

@Article{SCI:Joh2004b,
  author =    "C.R. Johnson and R.S. MacLeod and S.G. Parker and
              D.M. Weinstein",
  title =     "Biomedical Computing and Visualization Software
              Environments",
  journal =   j-ACM-COM,
  volume =    "47",
  number =    "11",
  pages =     "64--71",
  year =      "2004",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, inverse eeg, inverse
              meg, forward simulation, scalar field methods,
              scirun, biopse, uintah, ncrr, scirun 2, biotensor,
              biofem, visualization",
  url =       "http://www.sci.utah.edu/publications/crj04/ACM-Nov04.pdf",
}

@InProceedings{SCI:Joh2006a,
  author =    "C.R. Johnson and D.M. Weinstein",
  title =     "Biomedical Computing and Visualization",
  booktitle = "Proceedings of the Twenty-Ninth Australasian
              Computer Science Conference (ACSC2006): Conferences
              in Research and Practice in Information Technology
              (CRPIT)",
  volume =    "48",
  pages =     "3-10",
  year =      "2006",
  editor =    "Vladimir Estivill-Castro and Gill Dobbie",
  location =  "Hobart, Australia",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr, scientific
              visualization",
  url =       "http://www.sci.utah.edu/publications/crj06/Chris-Johnson-Keynote-Paper05.pdf",
}

@Booklet{SCI:Joh2006b,
  author =    "C.R. Johnson and R. Moorhead and T. Munzner and H.
              Pfister and P. Rheingans and T. S. Yoo",
  title =     "N{IH}-{NSF} {V}isualization {R}esearch
              {C}hallenges {R}eport",
  year =      "2006",
  publisher = "IEEE Press",
  note =      "http://tab.computer.org/vgtc/vrc/index.html",
  isbn =      "0-7695-2733-7",
  keywords =  "scalar field methods, volume rendering, vector
              field methods, tensor field methods, remote
              visualization, parallel visualization, popular",
  url =       "http://www.sci.utah.edu/publications/crj06/NIH-NSF-VRC-Report-Final.pdf",
}

@Article{SCI:Joh2006c,
  author =    "J.T. Johnson III and M.S. Hansen and I. Wu and
              L.J. Healy and C.R. Johnson and G.M. Jones and M.R.
              Capecchi and C. Keller",
  title =     "Virtual Histology of Transgenic Mouse Embryos for
              High-Throughput Phenotyping",
  journal =   "PLoS Genetics",
  volume =    "2",
  number =    "1",
  pages =     "471--477",
  year =      "2006",
  month =     "April",
  keywords =  "genetic mutation, phenotyping, histology",
  url =       "http://www.sci.utah.edu/publications/johnson06/johnson_PLOSgen2006.pdf",
}

@InCollection{SCI:Joh2006d,
  author =    "C.R. Johnson",
  title =     "Computational Methods and Software for Bioelectric
              Field Problems",
  booktitle = "Biomedical Engineering Handbook, 2nd Edition",
  volume =    "1",
  pages =     "1--23",
  year =      "2006",
  editor =    "J.D. Bronzino, editor-in-chief",
  chapter =   "23",
  publisher = "CRC Press, Boca Raton",
  keywords =  "ncrr, pse pses problem solving envoronment,
              bioelectric fields",
}

@InProceedings{SCI:Joh2006e,
  author =    "C.R. Johnson and S.G. Parker",
  title =     "Problem Solving Environments for DDDAS",
  booktitle = "Proceedings of the Ninth Copper Mountain
              Conference on Iterative Methods",
  year =      "2006",
  month =     "April",
  location =  "Copper Mountain, CO",
  note =      "Minisymposium: Actually Doing Dynamic Data-driven
              Application Simulations",
}

@InProceedings{SCI:Joh2006f,
  author =    "J.T. Johnson III and M.S. Hansen and I.Q Wu and
              L.J. Healy and C.R. Johnson and G.M. Jones and M.R.
              Capecchi and C.Keller",
  title =     "Virtual Histology of Transgenic Mouse Embryos for
              High-Throughput Phenotyping",
  booktitle = "Proceedings of the Teratology 46th Annual
              Meeting",
  year =      "2006",
  location =  "Tucson, AZ",
  keywords =  "genetic mutation, phenotyping, histology",
}

@InCollection{SCI:Joh2008a,
  author =    "C.R. Johnson and X. Tricoche",
  title =     "Biomedical Visualization",
  booktitle = "Advances in Biomedical Engineering",
  pages =     "209--272",
  year =      "2008",
  editor =    "Pascal Verdonck",
  chapter =   "6",
  publisher = "Elsvier Science",
  keywords =  "computational biomechanics, bioengineering,
              biomedicine, forward problems inverse problems
              forward simulation inverse solutions, pse grid
              computing, volume rendering, transfer functions,
              diffusion tensor imaging, map3d, scirun, biopse,
              visible human, ncrr, cvrti, scientific
              visualization, bioelectric fields",
  url =       "http://www.sci.utah.edu/publications/crj08/Johnson_Biomedvis2008.pdf",
}

@InCollection{SCI:Joh90a,
  author =    "C.R. Johnson and A.E. Pollard",
  title =     "Electrical Activation of the Heart: Computational
              Studies of the Forward and Inverse Problems in
              Electrocardiography",
  booktitle = "Computer Assisted Analysis and Modeling",
  pages =     "583--628",
  year =      "1990",
  publisher = "MIT Press",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart",
}

@InProceedings{SCI:Joh91a,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "Computer Models for Calculating Transthoracic
              Current Flow",
  booktitle = "{IEEE} Engineering in Medicine and Biology Society
              13th Annual International Conference",
  pages =     "768--769",
  year =      "1991",
  publisher = "{IEEE} Press",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scalar field methods, vector field methods, cardiac
              heart",
}

@Article{SCI:Joh92a,
  author =    "C.R. Johnson and R.S. MacLeod and P.R. Ershler",
  title =     "A Computer Model for the Study of Electrical
              Current Flow in the Human Thorax",
  journal =   "Computers in Biology and Medicine",
  volume =    "22",
  number =    "3",
  pages =     "305--323",
  year =      "1992",
  keywords =  "scalar field methods, vector field methods, tensor
              field methods, cardiac heart, scientific
              visualization",
}

@Article{SCI:Joh92b,
  author =    "C.R. Johnson and R.S. MacLeod and M.A. Matheson",
  title =     "Computer Simulations Reveal Complexity of
              Electrical Activity in the Human Thorax",
  journal =   "Computers in Physics",
  volume =    "6",
  pages =     "230--237",
  year =      "1992",
  month =     "May/June",
  keywords =  "scalar field methods, vector field methods, tensor
              field methods, cardiac heart",
}

@InProceedings{SCI:Joh92d,
  author =    "C.R. Johnson and R.S. MacLeod and A. Dutson",
  title =     "Effects of Anistropy and Inhomogeneity on
              Electrocardiographic Fields: A Finite Element
              Study",
  booktitle = "Engineering in Medicine and Biology Society 14th
              Annual International Conference",
  pages =     "2009--2010",
  year =      "1992",
  publisher = "{IEEE} Press",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              finite elements, cardiac heart",
}

@InCollection{SCI:Joh92e,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "Computational Studies of Forward and Inverse
              Problems in Electrocardiology",
  booktitle = "Biomedical Modeling and Simulation",
  pages =     "283--290",
  year =      "1992",
  editor =    "J. Eisenfeld and D.S. Levine and M. Witten",
  publisher = "Elsevier Science Publishers",
  address =   "Elsevier, Amsterdam",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart",
}

@InCollection{SCI:Joh92f,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "Nonuniform Spatial Mesh Adaption Using a
              Posteriori Error Estimate: Applications to Forward
              and Inverse Problems",
  booktitle = "Adaptive Methods for Partial Differential
              Equations",
  volume =    "14",
  pages =     "311--326",
  year =      "1992",
  editor =    "J.E. Flaherty and M.S. Shephard",
  publisher = "Elsevier",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, cardiac heart",
  url =       "http://www.sci.utah.edu/publications/crj92/mesh_adapt2.ps",
  url =       "http://www.sci.utah.edu/publications/crj92/mesh_adapt2.ps.Z",
}

@InCollection{SCI:Joh93a,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "Inverse Solutions for Electric and Potential Field
              Imaging",
  booktitle = "Physiological Imaging, Spectroscopy,
              andEarlyDetection Diagnostic Methods",
  volume =    "1887",
  pages =     "130--139",
  year =      "1993",
  editor =    "R.L. Barbour and M.J. Carvlin",
  publisher = "{SPIE}",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scientific visualization",
}

@Article{SCI:Joh93b,
  author =    "C.R. Johnson and R.S. MacLeod and M.A. Matheson",
  title =     "Computational Medicine: Bioelectric Field
              Problems",
  journal =   "{IEEE} Computer",
  volume =    "26",
  number =    "26",
  pages =     "59--67",
  year =      "1993",
  month =     "Oct",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scalar field methods, vector field methods",
}

@InProceedings{SCI:Joh93c,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "High Performance Computing in Medicine: Direct and
              Inverse Problems in Cardiology",
  booktitle = "{IEEE} Engineering in Medicine and Biology Society
              15th Annual International Conference",
  pages =     "582--583",
  year =      "1993",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart, scientific computing",
}

@Article{SCI:Joh93d,
  author =    "C.R. Johnson and R.S. MacLeod and M.A. Matheson
              and C. Zimmerman",
  title =     "The Body Electric",
  journal =   "Discover Magazine",
  pages =     "72--77",
  year =      "1993",
  month =     "February",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scalar field methods, vector field methods",
}

@InProceedings{SCI:Joh94a,
  author =    "C.R. Johnson and S.G. Parker",
  title =     "A Computational Steering Model Applied to Problems
              in Medicine",
  booktitle = "Supercomputing 94",
  pages =     "540--549",
  year =      "1994",
  publisher = "{IEEE} Press",
  keywords =  "scirun, pse, problem solving environments",
  url =       "http://www.sci.utah.edu/publications/crj94/sc94_9.ps",
  url =       "http://www.sci.utah.edu/publications/crj94/sc94_9.ps.Z",
}

@Article{SCI:Joh94e,
  author =    "C.R. Johnson and P. Alfeld",
  title =     "Computational Engineering and Science at the
              University of Utah",
  journal =   "{IEEE} Computational Science and Engineering",
  pages =     "7--9",
  year =      "1994",
  keywords =  ", scientific computing, scientific visualization,
              problem solving environments, pse",
}

@InProceedings{SCI:Joh95a,
  author =    "C.R. Johnson and R.S. MacLeod and J.A. Schmidt",
  title =     "Software Tools for Modeling, Computation, and
              Visualization in Medicine",
  booktitle = "CompMed 94 Proceedings",
  year =      "1995",
  publisher = "World Scientific",
  keywords =  "pse, problem solving environments",
  url =       "http://www.sci.utah.edu/publications/crj95/compmed.ps",
  url =       "http://www.sci.utah.edu/publications/crj95/compmed.ps.Z",
}

@InProceedings{SCI:Joh95b,
  author =    "C.R. Johnson and S.G. Parker",
  title =     "Applications in Computational Medicine using
              {SCIR}un: A Computational Steering Programming
              Environment",
  booktitle = "Supercomputer `95",
  pages =     "2--19",
  year =      "1995",
  editor =    "H.W. Meuer",
  publisher = "Springer-Verlag",
  keywords =  "scirun, forward problems inverse problems forward
              simulation inverse solutions finite elements,
              computational pde pdes computational partial
              differential equations evaporation, scientific
              computing, pse, problem solving environments",
  url =       "http://www.sci.utah.edu/publications/super95/super95_6.ps",
  url =       "http://www.sci.utah.edu/publications/super95/super95_6.ps.Z",
}

@InCollection{SCI:Joh95c,
  author =    "C.R. Johnson",
  title =     "Direct and Inverse Bioelectric Field Problems",
  booktitle = "Computational Science Education Project",
  year =      "1995",
  editor =    "E. Oliver and M. Strayer and V. Meiser and D.
              Zachmann and R. Giles",
  publisher = "DOE",
  address =   "Washington, D.C.",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              scientific visualization, bioelectric fields,
              scientific computing",
}

@InCollection{SCI:Joh95d,
  author =    "C.R. Johnson",
  title =     "Numerical Methods for Bioelectric Field
              Problems",
  booktitle = "The Biomedical Engineering Handbook",
  pages =     "161--188",
  year =      "1995",
  editor =    "J.D. Bronzino",
  publisher = "CRC Press",
  address =   "Boca Ratan",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              computational pde pdes computational partial
              differential equations evaporation, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/crj95/bioeng_1.ps",
  url =       "http://www.sci.utah.edu/publications/crj95/bioeng_1.ps.Z",
}

@Article{SCI:Joh96b,
  author =    "C.R. Johnson and D.M. Beazley and Y. Livnat and 
              S.G. Parker and J.A. Schmidt and H.W. Shen and D.M.
              Weinstein",
  title =     "Applications of Large-Scale Computing and
              Scientific Visualization in Medicine",
  journal =   "International Journal on Supercomputer
              Applications and High Performance Computing",
  year =      "1996",
  keywords =  "scientific computing, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/crj96/ijsa.ps",
}

@InCollection{SCI:Joh96e,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "Local regularization and adaptive methods for the
              inverse Laplace problem",
  booktitle = "Biomedical and Life Physics",
  pages =     "224--234",
  year =      "1996",
  editor =    "D.N. Ghista",
  publisher = "Vieweg-Verlag",
  address =   "Braunschweig",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements, ncrr,
              scientific computing",
  url =       "http://www.sci.utah.edu/publications/crj96/gauss94_2.ps",
  url =       "http://www.sci.utah.edu/publications/crj96/gauss94_2.ps.Z",
}

@TechReport{SCI:Joh97a,
  author =    "C.R. Johnson and D.M. Beazley and Y. Livnat and 
              S.G. Parker and J.A. Schmidt and H.W. Shen and D.M.
              Weinstein",
  title =     "Applications of Large-Scale Computing and
              Scientific Visualization in Medicine",
  number =    "UUSCI-1997-001",
  year =      "1997",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scirun, scientific visualization, scientific
              computing, pse, imaging",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-1997-001.pdf",
}

@Article{SCI:Joh97d,
  author =    "C.R. Johnson",
  title =     "Computational and Numerical Methods for
              Bioelectric Field Problems",
  journal =   "Critical Reviews in BioMedical Engineering",
  volume =    "25",
  number =    "1",
  pages =     "1--81",
  year =      "1997",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              vector field methods, tensor field methods",
  url =       "http://www.sci.utah.edu/publications/crj97/Crit-Rev-BE-Johnson97.pdf",
}

@Article{SCI:Joh98a,
  author =    "C.R. Johnson and R.S. MacLeod",
  title =     "Adaptive local regularization methods for the
              inverse {ECG} problem",
  journal =   "Progress in Biophysics and Biochemistry",
  volume =    "69",
  number =    "2/3",
  pages =     "405",
  year =      "1998",
  month =     "Dec",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scirun, inverse ecg, ncrr",
  url =       "http://www.sci.utah.edu/publications/crj98/biophys97.pdf",
}

@Article{SCI:Joh98b,
  author =    "C.R. Johnson",
  title =     "Computer Visualization in Medicine",
  journal =   "National Forum",
  volume =    "Fall",
  pages =     "17--21",
  year =      "1998",
  keywords =  ", scientific computing, scientific visualization,
              pse, problem solving environments, haptics",
  url =       "http://www.sci.utah.edu/publications/crj98/icfd98.ps.Z",
  url =       "http://www.sci.utah.edu/publications/crj98/icfd98.ps",
}

@InProceedings{SCI:Joh98c,
  author =    "C.R. Johnson and M. Berzins and L. Zhukov and R.
              Coffey",
  title =     "{SCIR}un: Applications to Atmospheric Diffusion
              Using Unstructured Meshes",
  booktitle = "Numerical Methods for Fluid Dynamics {VI}",
  pages =     "111--122",
  year =      "1998",
  editor =    "M.J. Baines",
  publisher = "Oxford University Press",
  keywords =  "scirun, computational pde pdes computational
              partial differential equations evaporation,
              adaptive mesh generation, evaporation, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/crj98/icfd98.ps.Z",
  url =       "http://www.sci.utah.edu/publications/crj98/icfd98.ps",
  url =       "http://www.sci.utah.edu/publications/crj98/icfd98.pdf",
}

@InProceedings{SCI:Joh99b,
  author =    "C.R. Johnson and S.G. Parker",
  title =     "The {SCIR}un Parallel Scientific Computing Problem
              Solving Environment",
  booktitle = "Ninth {SIAM} Conference on Parallel Processing for
              Scientific Computing",
  year =      "1999",
  keywords =  "scirun, problem solving environments, pse",
  url =       "http://www.sci.utah.edu/publications/siam99/siam99b.ps.gz",
  url =       "http://www.sci.utah.edu/publications/siam99/siam99b.ps",
}

@Article{SCI:Joh99c,
  author =    "C.R. Johnson and S.G. Parker and C.D. Hansen and
              G.L. Kindlmann and Y. Livnat",
  title =     "Interactive Simulation and Visualization",
  journal =   "{IEEE} Computer",
  volume =    "32",
  number =    "12",
  pages =     "59--65",
  year =      "1999",
  month =     "Dec",
  keywords =  "ncrr, scalar field methods, volume rendering,
              transfer functions, scirun, biopse, uintah",
  url =       "http://www.sci.utah.edu/publications/ieee_computer99/ieee_computer99.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ieee_computer99/ieee_computer99.pdf",
}

@Conference{SCI:Jol2006a,
  author =    "M. Jolley and J. Triedman and C.-F. Westin and
              D.M. Weinstein and R.S. MacLeod and D.H. Brooks",
  title =     "Image Based Modeling of Defibrillation in
              Children",
  booktitle = "Proceedings of the 26th Annual International
              Conference of the IEEE EMBS",
  year =      "2006",
  address =   "New York, NY, USA",
  month =     "August",
  keywords =  "ncrr",
}

@Article{SCI:Jol2007a,
  author =    "M. Jolley and J.G. Stinstra and D.M. Weinstein and
              S. Pieper and R.S.J. Estepar and G. Kindlmann and
              R.S. MacLeod and D.H. Brooks and J.K. Triedman",
  title =     "Open-Source Environment for Interactive Finite
              Element Modeling of Optimal ICD Electrode
              Placement",
  journal =   "Functional Imaging and Modeling of the Heart",
  volume =    "4466/2007",
  pages =     "373--382",
  year =      "2007",
  series =    "Lecture Notes in Computer Science (LCNS)",
  isbn =      "978-3-540-72906-8",
  url =       "http://www.sci.utah.edu/publications/jolley07/jolleyFIMH07.pdf",
}

@Article{SCI:Jol2008a,
  author =    "M. Jolley and J.G. Stinstra and S. Pieper and R.S.
              MacLeod and D.H. Brooks and F. Cecchin and J.K.
              Triedman",
  title =     "A Computer Modeling Tool for Comparing Novel ICD
              Electrode Orientations in Children and Adults",
  journal =   "Heart Rhythm",
  volume =    "5",
  number =    "4",
  pages =     "565--572",
  year =      "2008",
  month =     "April",
  pmid =      "18362024",
  keywords =  "ncrr, cibc, bioelectric field modeling",
  url =       "http://www.sci.utah.edu/publications/jolley08/Jolley_HeartRhythm2008.pdf",
}

@InProceedings{SCI:Jon2007a,
  author =    "B.W. Jones and R.E. Marc and C.B. Watt and K.
              Kinardi and D. DeMill and J.H. Yang and T. Tasdizen
              and P. Koshevoy and E. Jurrus and R.T. Whitaker",
  title =     "Structure and Function of Microneuromas in Retinal
              Remodeling",
  booktitle = "The Association for Research in Vision and
              Ophthalmology (ARVO) Conference",
  year =      "2007",
  note =      "(abstract)",
  keywords =  "crcns",
  url =       "http://www.sci.utah.edu/publications/jones07/ARVO2007_BWJones_poster_FINAL 2_small.pdf",
}

@Article{SCI:Jon2007b,
  author =    "C. Jones and K.-L. Ma and A.R. Sanderson and L.
              Myers",
  title =     "Visual Interrogation of Gyrokinetic Particle
              Simulations",
  journal =   "Journal of Physics",
  volume =    "78",
  pages =     "012033 (6pp)",
  year =      "2007",
  series =    "Conference Series",
  keywords =  "fusion tokamak, particle physics",
  url =       "http://www.sci.utah.edu/publications/jones07/Jones_JPhys2007.pdf",
}

@Article{SCI:Jos1993a,
  author =    "S. Joshi and M. Miller",
  title =     "Maximum a Posteriori Estimation with Good's
              Roughness for Three-Dimensional Optical-Sectioning
              Microscopy",
  journal =   "J Opt Soc Am A",
  volume =    "10",
  number =    "5",
  pages =     "1078--1085",
  year =      "1993",
  month =     "May",
}

@InProceedings{SCI:Jos1995a,
  author =    "S.C. Joshi and M.I. Miller and G.E. Christensen
              and A. Banerjee and T.A. Coogan and U. Grenander",

  title =     "Hierarchical brain mapping via a generalized
              Dirichlet solution for mapping brain manifolds",
  booktitle = "Proc. of the SPIE International Symposium on
              Optical Science, Engineering, and
              Instrumentation",
  pages =     "278--289",
  year =      "1995",
  month =     "August",
}

@InProceedings{SCI:Jos1995b,
  author =    "S.C. Joshi and J. Wang and M.I. Miller and D.V.
              Essen and U. Grenander",
  title =     "On the Differential Geometry of the Cortical
              Surface",
  booktitle = "Proceedings of SPIE 1995 International Symposium:
              Vision Geometry IV",
  pages =     "304--311",
  year =      "1995",
  month =     "August",
  location =  "San Diego, CA",
}

@Article{SCI:Jos1997a,
  author =    "S.C. Joshi and M.I. Miller and U. Grenander",
  title =     "On the Geometry and Shape of Brain
              Sub-Manifolds",
  journal =   "International Journal of Pattern Recognition and
              Artificial Intelligence, special issue on Magnetic
              Resonance Imaging",
  volume =    "11",
  number =    "8",
  pages =     "1317--1343",
  year =      "1997",
}

@InProceedings{SCI:Jos1997b,
  author =    "S. Joshi and A. Banerjee and G.E. Christensan and
              J.G. Csernansky and J.W. Haller and M.I. Miller and
              L. Wang",
  title =     "Gaussian Random Fields on Sub-Manifolds for
              Characterizing Brain Surfaces",
  booktitle = "Proceedings of the International Conference on
              Image Processing in Medical Imaging (IPMI)",
  year =      "1997",
}

@Article{SCI:Jos1999a,
  author =    "M. Joshi and J. Cui and K. Doolittle and S. Joshi
              and D.C. Van Essen and L. Wang and M. Miller",
  title =     "Brain Segmentation and the Generation of Cortical
              Surfaces",
  journal =   "Neuroimage",
  volume =    "9",
  number =    "5",
  pages =     "461--476",
  year =      "1999",
  month =     "May",
}

@Article{SCI:Jos2001a,
  author =    "S. Joshi and S. Pizer and P.T. Fletcher and A.
              Thall and G. Tracton",
  title =     "Multi-scale 3-D Deformable Model Segmentation
              Based on Medial Description",
  journal =   "Information Processing in Medical Imaging
              (IPMI)",
  pages =     "64--77",
  year =      "2001",
  editor =    "MF Insana and RM Leahy",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/joshi01/IPMI01-Joshi-defm.pdf",
}

@Article{SCI:Jos2001b,
  author =    "S. Joshi and M.I. Miller",
  title =     "Landmark Matching Via Large Deformation
              Diffeomorphisms",
  journal =   "IEEE Transactions on Image Processing",
  volume =    "9",
  number =    "8",
  pages =     "1357--1370",
  year =      "2000",
  month =     "August",
}

@Article{SCI:Jos2002a,
  author =    "S. Joshi and S. Pizer and P.T. Fletcher and P.
              Yushkevich and A. Thall and J. Marron",
  title =     "Multiscale Deformable Model Segmentation and
              Statistical Shape Analysis Using Medial
              Descriptions",
  journal =   "IEEE Trans Med Imaging",
  volume =    "21",
  number =    "5",
  pages =     "538--550",
  year =      "2002",
  month =     "May",
  url =       "http://www.sci.utah.edu/publications/joshi02/TMI02-Joshi-mreps.pdf",
}

@Article{SCI:Jos2003a,
  author =    "S. Joshi and P. Lorenzen and G. Gerig and E.
              Bullitt",
  title =     "Structural and Radiometric Asymmetry in Brain
              Images",
  journal =   "Med Image Anal",
  volume =    "7",
  number =    "2",
  pages =     "155--170",
  year =      "2003",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/joshi03/MEDIA03-Joshi-brain.pdf",
}

@Article{SCI:Jos2004a,
  author =    "S. Joshi and B. Davis and M Jomier and G. Gerig",
  title =     "Unbiased Diffeomorphic Atlas Construction for
              Computational Anatomy",
  journal =   "Neuroimage",
  volume =    "23 Suppl. 1",
  pages =     "S151--S160",
  year =      "2004",
  url =       "http://www.sci.utah.edu/publications/joshi04/NeuroImage04-Joshi.pdf",
}

@InProceedings{SCI:Jur2006a,
  author =    "E. Jurrus and T. Tasdizen and P. Koshevoy and P.T.
              Fletcher and M. Hardy and C-B. Chien and W. Denk
              and R.T. Whitaker",
  title =     "Axon Tracking in Serial Block-Face Scanning
              Electron Microscopy",
  booktitle = "Workshop on Microscopic Image Analysis with
              Applications in Biology, MICCAI",
  year =      "2006",
  month =     "October",
  keywords =  "ip gp image processing goemetry processing,
              crcns",
  url =       "http://www.sci.utah.edu/publications/jurrus06/miaab2006_jurrus_header.pdf",
}

@InProceedings{SCI:Jur2008b,
  author =    "E. Jurrus and R.T. Whitaker and B. Jones and R.
              Marc and T. Tasdizen",
  title =     "An Optimal-Path Approach for Neural Circuit
              Reconstruction",
  booktitle = "Proceedings of the 5th IEEE International
              Symposium on Biomedical Imaging: From Nano to
              Macro",
  pages =     "1609--1612",
  year =      "2008",
  pmid =      "19172170",
  keywords =  "crcns, retinal reconstruction, blindness",
  url =       "http://www.sci.utah.edu/publications/jurrus08/ieeeisbi2008_jurrus.pdf",
}

@Article{SCI:Jur2009a,
  author =    "E. Jurrus and M. Hardy and T. Tasdizen and P.T.
              Fletcher and P. Koshevoy and C.-B. Chien and W.
              Denk and R.T. Whitaker",
  title =     "Axon Tracking in Serial Block-Face Scanning
              Electron Microscopy",
  journal =   "Medical Image Analysis (MEDIA)",
  volume =    "13",
  number =    "1",
  pages =     "180--188",
  year =      "2009",
  publisher = "Elsevier",
  month =     "February",
  pmid =      "18617436",
  keywords =  "CRCNS, neuron tracking",
  url =       "http://www.sci.utah.edu/publications/jurrus09/AxonTracking_MIA09.pdf",
}

@TechReport{SCI:Jur2009b,
  author =    "E. Jurrus and A.R.C. Paiva and S. Watanabe and
              R.T. Whitaker and E.M. Jorgensen and T. Tasdizen",

  title =     "Serial Neural Network Classifier for Membrane
              Detection using a Filter Bank.",
  number =    "UUSCI-2009-006",
  year =      "2009",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/jurrus09/UUSCI-2009-006.pdf",
}

@InProceedings{SCI:Jur2009c,
  author =    "E. Jurrus and A.R.C. Paiva and S. Watanabe and R.
              Whitaker and E.M. Jorgensen and T. Tasdizen",
  title =     "Serial Neural Network Classifier for Membrane
              Detection using a Filter Bank",
  booktitle = "Proc. Workshop on Microscopic Image Analysis with
              Applications in Biology",
  year =      "2009",
  location =  "Bethesda, MD, USA",
  url =       "http://www.sci.utah.edu/publications/jurrus09/Jurrus_2009e.pdf",
}

@Article{SCI:Jur2010a,
  author =    "E. Jurrus and A.R.C. Paiva and S. Watanabe and
              J.R. Anderson and B.W. Jones and R.T. Whitaker and
              E.M. Jorgensen and R.E. Marc and T. Tasdizen",
  title =     "Detection of Neuron Membranes in Electron
              Microscopy Images Using a Serial Neural Network
              Architecture",
  title_url =
              "http://www.sciencedirect.com/science/article/B6W6Y-50BB5M8-1/2/9991cfd9d938393ae5775578a69c03e6",

  journal =   "Medical Image Analysis",
  volume =    "14",
  number =    "6",
  pages =     "770--783",
  year =      "2010",
  doi =       "10.1016/j.media.2010.06.002",
  pmid =      "20598935",
  url =       "http://www.sci.utah.edu/publications/jurrus10/Jurrus_MIA2010.pdf",
}

@Article{SCI:Kad2004a,
  author =    "A. Kadlag and A.V. Wanjari and J. Freire and J.
              Haritsa",
  title =     "Supporting Exploratory Queries in Databases",
  journal =   "Database Systems for Advanced Applications",
  volume =    "2973/2004",
  pages =     "25-26",
  year =      "2004",
  series =    "Lecture Notes in Computer Science (LNCS)",
  keywords =  "database queries",
  url =       "http://www.sci.utah.edu/publications/kadlag04/Kadlag_LNCS2004.pdf",
}

@InProceedings{SCI:Kar1999a,
  author =    "G.-S. Karamanos and C. Evangelinos and R.C. Boes
              and R.M. Kirby and G.E. Karniadakis",
  title =     "Direct Numerical Simulation of Turbulence with a
              PC/Linux Cluster: Fact or Fiction?",
  booktitle = "Proceedings of SuperComputing 1999",
  year =      "1999",
  month =     "November",
  location =  "Portland, OR",
}

@Article{SCI:Kas2008a,
  author =    "R. Kashani and M. Hub and J.M. Balter and M.L.
              Kessler and L. Dong and L. Zhang and L. Xing and Y.
              Xie and D. Hawkes and J.A. Schnabel and J.
              McClelland and S. Joshi and Q. Chen and W. Lu",
  title =     "Objective assessment of deformable image
              registration in radiotherapy: a multi-institution
              study",
  journal =   "Medical Physics",
  volume =    "35",
  number =    "12",
  pages =     "5944--5953",
  year =      "2008",
  pmid =      "19175149",
  url =       "http://www.sci.utah.edu/publications/kashani08/Kashani_MedPhys2008.pdf",
}

@Article{SCI:Kea2005a,
  author =    "P.J. Keall and S. Joshi and S.S. Vedam and J.V.
              Siebers and V.R. Kini and R. Mohan",
  title =     "Four-Dimensional Radiotherapy Planning for
              DMLC-Based Respiratory Motion Tracking",
  journal =   "Med Phys",
  volume =    "32",
  number =    "4",
  pages =     "942--951",
  year =      "2005",
  month =     "April",
}

@Article{SCI:Kel2011a,
  author =    "Y. Keller and Y. Gur",
  title =     "A Diffusion Approach to Network Localization",
  journal =   "IEEE Transactions on Signal Processing",
  pages =     "(accepted)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/keller11/sensor_ localization_one_column_sub.pdf",
}

@TechReport{SCI:Ken2008a,
  author =    "A. Kensler and A. Knoll and P. Shirley",
  title =     "Better Gradient Noise",
  number =    "UUSCI-2008-001",
  year =      "2008",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ray tracing RT",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2008-001.pdf",
}

@InProceedings{SCI:Ken2008b,
  author =    "A. Kensler",
  title =     "Tree Rotations for Improving Bounding Volume
              Heirarchies",
  booktitle = "Proceedings of the 2008 IEEE Symposium on
              Interactive Ray Tracing",
  pages =     "(accepted)",
  year =      "2008",
}

@InProceedings{SCI:Kho2002a,
  author =    "E.G. Kholmovski and A.A. Samsonov and D.L.
              Parker",
  title =     "{POCSENSE}: POCS-based method for reconstruction
              from sensitivity-encoded data",
  booktitle = c-ISMRM2002,
  pages =     "194",
  year =      "2002",
  location =  "Honolulu",
  keywords =  "NCRR, ip image processing signal processing, ncrr,
              imaging, bisti",
  url =       "http://www.sci.utah.edu/publications/samsonov02/ismrm02_abs4.pdf",
}

@Article{SCI:Kho2002b,
  author =    "E.G. Kholmovski and A.A. Samsonov and D.L.
              Parker",
  title =     "Motion Artifact Reduction Technique for Dual
              Contrast FSE Imaging",
  journal =   "Magnetic Resonance Imaging",
  volume =    "20",
  number =    "6",
  pages =     "455--462",
  year =      "2002",
  keywords =  "NCRR, ip image processing signal processing, ncrr,
              imaging",
  url =       "http://www.sci.utah.edu/publications/samsonov02/mri02_motion.pdf",
}

@InProceedings{SCI:Kho2005a,
  author =    "E.G. Kh{\"o}lmovski and E.V.R. DiBella and A.A.
              Samsonov",
  title =     "Accurate Assessment of the Arterial Input Function
              using {MRI} with Radial Sampling",
  booktitle = c-SCMR2005,
  volume =    "7",
  pages =     "292--294",
  year =      "2005",
  keywords =  "cardiac heart, ncrr, Cardiad perfusion MRI,
              Arterial Input Function, cardiad perfusion mri,
              arterial input function, bisti",
}

@Article{SCI:Kho2005b,
  author =    "E.G. Kh{\"o}lmovski and D.L. Parker",
  title =     "Application of Phase Consistency to Improve Time
              Efficiency and Image Quality in Dual Echo Black
              Blood Carotid Angiography",
  journal =   "Magn Reson Imaging",
  volume =    "23",
  number =    "6",
  pages =     "711--722",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/kholmovski05/MagResImaging2005.pdf",
}

@InProceedings{SCI:Kho2005c,
  author =    "E.G. Kh{\"o}lmovski and E.V.R. DiBella and A.A.
              Samsonov",
  title =     "Perfusion MRI with Radial Sampling: Arterial Input
              Function and Tissue Enhancement Curve Assessment",

  booktitle = "Proc. Intl. Soc. Mag. Reson.",
  pages =     "252",
  year =      "2005",
  note =      "Abstract",
  url =       "http://www.sci.utah.edu/publications/kholmovski05/Kholmovski_ISMR2005.pdf",
}

@InProceedings{SCI:Kho2005d,
  author =    "E.G. Kh{\"o}lmovski and A.A. Samsonov",
  title =     "GARSE: Generalized Autocalibrating Reconstruction
              for Sensitivity Encoded MRI",
  booktitle = "Proc. Intl. Soc. Mag. Reson.",
  pages =     "2672",
  year =      "2005",
  note =      "Abstract",
  url =       "http://www.sci.utah.edu/publications/kholmovski05/Kholmovski_ISMR2005b.pdf",
}

@InProceedings{SCI:Kim2011a,
  author =    "S.H. Kim and V. Fonov and J. Piven and J. Gilmore
              and C. Vachet and G. Gerig and D.L. Collins and M.
              Styner",
  title =     "Spatial Intensity Prior Correction for Tissue
              Segmentation in the Developing human Brain",
  booktitle = "Proceedings of IEEE ISBI 2011",
  pages =     "2049--2052",
  year =      "2011",
  doi =       "10.1109/ISBI.2011.5872815",
  url =       "http://www.sci.utah.edu/publications/kim11/Kim_ISBI2011.pdf",
}

@Article{SCI:Kin2000,
  author =    "G.L. Kindlmann and D.M. Weinstein and D. Hart",
  title =     "Strategies for Direct Volume Rendering of
              Diffusion Tensor Fields",
  journal =   j-TVCG,
  volume =    "6",
  number =    "2",
  pages =     "124--138",
  year =      "2000",
  month =     "April-June",
  keywords =  "tensor field methods, diffusion tensor imaging,
              biopse, ncrr, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/gk_tvcg00/strategies-tensor.pdf",
}

@InProceedings{SCI:Kin2003b,
  author =    "G. Kindlmann and R.T. Whitaker and T. Tasdizen and
              T. M{\"o}ller",
  title =     "Curvature-Based Transfer Functions for Direct
              Volume Rendering: Methods and Applications",
  booktitle = "Proceedings Visualization 2003",
  pages =     "67",
  year =      "2003",
  month =     "October",
  keywords =  "scalar field methods, transfer functions,
              curvature based, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/gk03/vis03kindlmann.pdf",
}

@InProceedings{SCI:Kin2004a,
  author =    "G Kindlmann",
  title =     "Superquadric Tensor Glyphs",
  booktitle = c-VISSYM2004,
  pages =     "147--154",
  year =      "2004",
  month =     "May",
  keywords =  "tensor field methods, diffusion tensor imaging,
              biopse, ncrr",
  url =       "http://www.sci.utah.edu/publications/gk04/vissym04kindlmann.pdf",
}

@InProceedings{SCI:Kin2004b,
  author =    "G.L. Kindlmann and D.M. Weinstein and A.D. Lee and
              A.W. Toga and P.M. Thompson",
  title =     "Visualization of Anatomic Covariance Tensor
              Fields",
  booktitle = "Proceedings of the {IEEE} Engineering in Medicine
              and Biology Society 26th Annual International
              Conference",
  year =      "2004",
  keywords =  "ncrr, biopse",
  url =       "http://www.sci.utah.edu/publications/gk04/embs04.pdf",
}

@InProceedings{SCI:Kin2004c,
  author =    "G. Kindlmann and A. L. Alexander and M. Lazar and
              J. Lee and T. Tasdizen and R.T. Whitaker",
  title =     "An Algorithm for Moment-Based Global Registration
              of Echo Planar Diffusion-Weighted Images",
  booktitle = "Proceedings of 12th Annual ISMRM",
  pages =     "2200",
  year =      "2004",
}

@TechReport{SCI:Kin2004d,
  author =    "G. Kindlmann",
  title =     "Visualization and Analysis of Diffusion Tensor
              Fields",
  number =    "UUCS-04-014",
  year =      "2004",
  institution = "School of Computing, University of Utah",
  type =      "Technical Report",
  note =      "PhD Thesis",
  keywords =  "diffusion tensor imaging",
  url =       "http://www.sci.utah.edu/publications/gk04/UUCS-04-014.pdf",
}

@Article{SCI:Kin2005a,
  author =    "G.L. Kindlmann and D.M. Weinstein and G.M. Jones
              and C.R. Johnson and M.R. Capecchi and C. Keller",

  title =     "Practical Vessel Imaging by Computed Tomography in
              Live Transgenic Mouse Models for Human Tumors",
  journal =   "Journal of Molecular Imaging",
  volume =    "4",
  number =    "4",
  pages =     "417--424",
  year =      "2005",
  keywords =  "ncrr, ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/gk05/Kindlmann_et-al_JMI_2005.pdf",
}

@InProceedings{SCI:Kin2006a,
  author =    "G. Kindlmann and X. Tricoche and C.-F. Westin",
  title =     "Anisotropy Creases Delineate White Matter
              Structure in Diffusion Tensor {MRI}",
  booktitle = "Proceedings of the Ninth International Conference
              on Medical Image Computing and Computer-Assisted
              Intervention (MICCAI'06)",
  pages =     "126--133",
  year =      "2006",
  series =    "Springer Lecture Notes in Computer Science 4190",
  month =     "October",
  location =  "Copenhagen, Denmark",
  keywords =  "diffusion tensor imaging, ncrr",
  url =       "http://www.sci.utah.edu/publications/gk06/kindlmannMICCAI06.pdf",
}

@InProceedings{SCI:Kin2007a,
  author =    "G. Kindlmann and D.B. Ennis and R.T. Whitaker and
              C.-F. Westin",
  title =     "Diffusion Tensor Analysis With Invariant Gradients
              and Rotation Tangents",
  booktitle = "IEEE Transactions on Medical Imaging",
  volume =    "26",
  number =    "11",
  pages =     "1483--1499",
  year =      "2007",
  keywords =  "DTI, diffusion tensor imaging",
  url =       "http://www.sci.utah.edu/publications/kindlmann07/Kindlmann_TMI2007.pdf",
}

@InProceedings{SCI:Kin98a,
  author =    "G. Kindlmann and J. Durkin",
  title =     "Semi-Automatic Generation of Transfer Functions
              for Direct Volume Rendering",
  booktitle = "{IEEE} Symposium on Volume Visualization",
  pages =     "79--86",
  year =      "1998",
  publisher = "{IEEE} Press",
  month =     "Oct",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/gk98/vv98glk-paper.ps.gz",
  url =       "http://www.sci.utah.edu/publications/gk98/vv98glk-paper.ps",
  url =       "http://www.sci.utah.edu/publications/gk98/vv98glk-paper.pdf",
  url =       "http://www.sci.utah.edu/publications/gk98/vv98glk-plate.ps.gz",
  url =       "http://www.sci.utah.edu/publications/gk98/vv98glk-plate.ps",
  url =       "http://www.sci.utah.edu/publications/gk98/vv98glk-plate.pdf",
}

@InProceedings{SCI:Kin99,
  author =    "G.L. Kindlmann and D.M. Weinstein",
  title =     "Hue-Balls and Lit-Tensors for Direct Volume
              Rendering of Diffusion Tensor Fields",
  booktitle = "Proceedings of the {IEEE} Visualization 99",
  pages =     "183--189",
  year =      "1999",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, tensor field methods, diffusion tensor
              imaging, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/gk99/vis99_hueballs-paper.ps.gz",
  url =       "http://www.sci.utah.edu/publications/gk99/vis99_hueballs-paper.ps",
  url =       "http://www.sci.utah.edu/publications/gk99/vis99_hueballs-paper.pdf",
}

@Article{SCI:Kir1999a,
  author =    "R.M. Kirby and T.C. Warburton and I. Lomtev and
              G.E. Karniadakis",
  title =     "A Discontinuous Galerkin Spectral/hp Method on
              Hybrid Grids",
  journal =   "Journal of Applied Numerical Mathematics",
  volume =    "33",
  pages =     "393--405",
  year =      "1999",
}

@InProceedings{SCI:Kir1999b,
  author =    "R.M. Kirby and H. Marmanis and D.H. Laidlaw",
  title =     "Visualizing Multivalued Data from 2D
              Incompressible Flows Using Concepts from
              Painting",
  booktitle = "Proceedings of IEEE Visualization 1999",
  pages =     "333--340",
  year =      "1999",
  month =     "October",
  location =  "San Francisco, CA",
}

@InBook{SCI:Kir2001a,
  author =    "R.M. Kirby and G.E. Karniadakis and O. Mikulchenko
              and K. Mayaram",
  title =     "Integrated Simulation for MEMS: Coupling
              Flow-Structure-Thermal-Electrical Domains",
  booktitle = "The CRC Handbook of MEMS",
  pages =     "5-1 -- 5-25",
  year =      "2001",
  editor =    "M. Gad-el-Hak",
  chapter =   "5",
  publisher = "CRC Press, Boca Raton, FL",
}

@InBook{SCI:Kir2001b,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "Under-Resolution and Diagnostics in Spectral
              Simulations of Complex-Geometry Flows",
  booktitle = "Turbulent Flow Computation",
  pages =     "1--42",
  year =      "2001",
  editor =    "D. Drikakis and B. Geurts",
  publisher = "Kluwer Academic Publishers, The Netherlands",
}

@Article{SCI:Kir2001c,
  author =    "R.M. Kirby and G.E. Karniadakis and O. Mikulchenko
              and K. Mayaram",
  title =     "An Integrated Simulator for Coupled Domain
              Problems in MEMS",
  journal =   "Journal of Microelectromechanical Systems",
  volume =    "10",
  number =    "3",
  pages =     "379--399",
  year =      "2001",
}

@Article{SCI:Kir2002a,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "Coarse Resolution Turbulence Simulations With
              Spectral Vanishing Viscosity - Large-Eddy
              Simulations (SVV-LES)",
  journal =   j-JFE,
  volume =    "124",
  number =    "4",
  pages =     "886-891",
  year =      "2002",
  keywords =  "cfd computational fluid dynamics, computational
              pde pdes computational partial differential
              equations evaporation, scientific computing",
}

@Article{SCI:Kir2002b,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "Coarse Resolution Turbulence Simulations With
              Spectral Vanishing Viscosity - Large-Eddy
              Simulations (SVV-LES)",
  journal =   "Journal of Fluids Engineering",
  volume =    "124",
  number =    "4",
  pages =     "886--891",
  year =      "2002",
}

@Article{SCI:Kir2003a,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "De-Aliasing on Non-Uniform Grids: Algorithms and
              Applications",
  journal =   "J. Comp. Phys.",
  volume =    "191",
  number =    "1",
  pages =     "267--282",
  year =      "2003",
  month =     "October",
  keywords =  "cfd computational fluid dynamics, dealiasing
              de-aliasing aliasing non-uniform grids, scientific
              computing",
}

@Book{SCI:Kir2003b,
  author =    "G.E. Karniadakis and R.M. Kirby",
  title =     "Parallel Scientific Computing in C++ and MPI: A
              Seamless Approach to Parallel Algorithms and their
              Implementation",
  pages =     "628 pages",
  year =      "2003",
  publisher = "Cambridge University Press",
  month =     "June",
  isbn =      "0521520800",
  keywords =  "parallel visualization, parallel computing,
              programing",
}

@Article{SCI:Kir2003c,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "De-Aliasing on Non-Uniform Grids: Algorithms and
              Applications",
  journal =   "Journal of Computational Physics",
  volume =    "191",
  pages =     "249--264",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/kirby03/Kirby-5.pdf",
}

@Article{SCI:Kir2004a,
  author =    "R.M. Kirby and Z. Yosibash",
  title =     "Solution of Von-Karman Dynamic Non-linear Plate
              Equations Using a Pseudo-spectral Method",
  journal =   j-CMAME,
  volume =    "193",
  number =    "6-8",
  pages =     "575-599",
  year =      "2004",
  keywords =  "fluid structure problems, computational mechanics,
              Scientific computing, scientific computing",
  url =       "http://www.sci.utah.edu/publications/kirby04/Kirby-6.pdf",
}

@InBook{SCI:Kir2004b,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "Spectral Element and hp Methods",
  booktitle = "Encyclopedia of Computational Mechanics",
  volume =    "3",
  pages =     "61--88",
  year =      "2004",
  editor =    "E. Stein, R. de Borst and T.J.R. Hughes",
  chapter =   "3",
  publisher = "John Wiley and Sons, NY",
}

@Article{SCI:Kir2004d,
  author =    "R.M. Kirby and Z. Yosibash",
  title =     "Solution of von-Karman Dynamic Non-Linear Plate
              Equations Using a Pseudo-Spectral Method",
  journal =   "Computer Methods in Applied Mechanics and
              Engineering",
  volume =    "193",
  number =    "6-8",
  pages =     "575--599",
  year =      "2004",
  url =       "http://www.sci.utah.edu/publications/kirby04/Kirby-6.pdf",
}

@InCollection{SCI:Kir2005a,
  author =    "R.M. Kirby and D.F. Keefe and D.H. Laidlaw",
  title =     "Painting and Visualization",
  booktitle = "The Visualization Handbook",
  pages =     "873--891",
  year =      "2005",
  editor =    "C.D. Hansen and C.R. Johnson",
  publisher = "Elsevier",
  isbn =      "0-12-387582-X",
  url =       "http://www.sci.utah.edu/publications/kirby05/ch45_kirby.pdf",
}

@Article{SCI:Kir2005b,
  author =    "R.M. Kirby and G.E. Karniadakis",
  title =     "Selecting the Numerical Flux in Discontinuous
              Galerkin Methods for Diffusion Problems",
  journal =   "Journal of Scientific Computing",
  volume =    "22/23",
  pages =     "385--411",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/kirby05/Kirby-11.pdf",
}

@Article{SCI:Kir2006a,
  author =    "N.D. Kirkpatrick and J.B. Hoying and S.K. Botting
              and J.A. Weiss and U. Utzinger",
  title =     "In Vitro Model for Endogenous Optical Signatures
              of Collagen",
  journal =   "Journal of Biomedical Optics",
  volume =    "11",
  number =    "5",
  year =      "2006",
  month =     "September/October",
  keywords =  "angiogenesis, computational biomechanics,
              multiscale tissue modeling multiscale tissue
              simulation",
  url =       "http://www.sci.utah.edu/publications/kirkpatrick06/kirkpatrick_j_biomed_optics_2006.pdf",
}

@InProceedings{SCI:Kir2006b,
  author =    "R.M. Kirby and C.R. Johnson and M. Berzins",
  title =     "Involving Undergraduates in Computational Science
              and Engineering Research: Successes and
              Challenges",
  booktitle = "Proceedings of Computational Science - ICCS 2006:
              6th International Conference",
  volume =    "3992",
  year =      "2006",
  series =    "Lecture Notes in Computer Science",
  month =     "May 28-31",
  location =  "Reading, UK",
  url =       "http://www.sci.utah.edu/publications/kirby06/iccs06hpc.pdf",
}

@Article{SCI:Kir2006c,
  author =    "R.M. Kirby and S.J. Sherwin",
  title =     "Stabilisation of Spectral/hp Element Methods
              Through Spectral Vanishing Viscosity: Application
              to Fluid Mechanics Modelling",
  journal =   "Computer Methods in Applied Mechanics and
              Engineering",
  volume =    "195",
  pages =     "3128--3144",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/kirby06/Kirby-12.pdf",
}

@Article{SCI:Kir2006d,
  author =    "R.M. Kirby and S.J. Sherwin",
  title =     "Aliasing Errors Due to Quadratic Non-Linearities
              On Triangular Spectral/hp Element
              Discretisations",
  journal =   "Journal of Engineering Mathematics",
  volume =    "56",
  number =    "3",
  pages =     "273--288",
  year =      "2006",
}

@Article{SCI:Kir2006e,
  author =    "R.M. Kirby and Z. Yosibash and G.E. Karniadakis",
  title =     "Towards Stable Coupling Methods for High-Order
              Discretizations of Fluid-Structure Interaction:
              Algorithms and Observations",
  journal =   "Journal of Computational Physics",
  volume =    "223",
  number =    "2",
  pages =     "489--518",
  year =      "2006",
}

@Article{SCI:Kir2006f,
  author =    "R.M. Kirby and S.J. Sherwin",
  title =     "Aliasing Errors Due to Quadratic Non-Linearities
              On Triangular Spectral/hp Element
              Discretisations",
  journal =   "Journal of Engineering Mathematics",
  volume =    "56",
  pages =     "273--288",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/kirby06/Kirby-16.pdf",
}

@Article{SCI:Kir2007a,
  author =    "R.M. Kirby and Z. Yosibash and G.E. Karniadakis",
  title =     "Towards Stable Coupling Methods for High-Order
              Discretizations of Fluid-Structure Interaction:
              Algorithms and Observations",
  journal =   "Journal of Computational Physics",
  volume =    "223",
  number =    "2",
  pages =     "489--518",
  year =      "2007",
  keywords =  "computational mechanics, fluid structure
              problems",
  url =       "http://www.sci.utah.edu/publications/kirby07/Kirby-19.pdf",
}

@Article{SCI:Kir2008a,
  author =    "R.M. Kirby and C.T. Silva",
  title =     "The Need For Verifiable Visualization",
  journal =   "IEEE Computer Graphics and Applications",
  pages =     "(accepted)",
  year =      "2008",
}

@Article{SCI:Kir2008b,
  author =    "R.M. Kirby and C.T. Silva",
  title =     "The Need for Verifiable Visualization",
  journal =   "IEEE Computer Graphics and Applications",
  pages =     "4--9",
  year =      "2008",
  editor =    "Theresa-Marie Rhyne",
  month =     "Sept/Oct",
  url =       "http://www.sci.utah.edu/publications/kirby08/cga2008.pdf",
}

@Article{SCI:Kir2011a,
  author =    "R.M. Kirby and B. Cockburn and S.J. Sherwin",
  title =     "To CG or to HDG: A Comparative Study",
  journal =   "Journal of Scientific Computing",
  year =      "2011",
  note =      "published online",
  doi =       "10.1007/s10915-011-9501-7",
  url =       "http://www.sci.utah.edu/publications/kirby11/Kirby_JSC2011.pdf",
}

@InProceedings{SCI:Kla2008a,
  author =    "S. Klasky and M. Vouk and M. Parashar and A. Khan
              and N. Podhorszki and R. Barreto and D. Silver and
              S.G. Parker",
  title =     "Collaborative Visualization Spaces for Petascale
              Simulations",
  booktitle = "Proceedings of 2008 International Symposium on
              Collaborative Technologies and Systems ({CTS}
              2008)",
  pages =     "(accepted)",
  year =      "2008",
  keywords =  "collaborative visualization, large scale
              simulation",
}

@InProceedings{SCI:Kle95a,
  author =    "R.N. Klepfer and C.R. Johnson and R.S. MacLeod",
  title =     "The Effects of Inhomogeneities and Anisotropies on
              Electrocardiographic Fields: A Three-Dimensional
              Finite Element Study",
  booktitle = "{IEEE} Engineering in Medicine and Biology Society
              17th Annual International Conference",
  pages =     "233--234",
  year =      "1995",
  publisher = "{IEEE} Press",
  url =       "http://www.sci.utah.edu/publications/klepfer95/embs95_rnk5.ps",
  url =       "http://www.sci.utah.edu/publications/klepfer95/embs95_rnk5.ps.Z",
}

@Article{SCI:Kle96,
  author =    "R.N. Klepfer and C.R. Johnson and R.S. MacLeod",
  title =     "The effects of inhomogeneities and anisotropies on
              electrocardiographic fields: A three-dimensional
              finite element study",
  journal =   "{IEEE} Trans. on Biomedical Engineering",
  year =      "1996",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              finite elements, ncrr, scientific computing",
  url =       "http://www.sci.utah.edu/publications/klepfer96/ieee_bme96.ps",
  url =       "http://www.sci.utah.edu/publications/klepfer96/ieee_bme96.ps.Z",
}

@Article{SCI:Kle97a,
  author =    "R.N. Klepfer and C.R. Johnson and R.S. MacLeod",
  title =     "The Effects of Inhomogeneities and Anisotropies on
              Electrocardiographic Fields: A Three-Dimensional
              Finite Element Study",
  journal =   "{IEEE} Transactions on Biomedical Engineering",
  volume =    "44",
  number =    "8",
  pages =     "706--719",
  year =      "1997",
  month =     "August",
  url =       "http://www.sci.utah.edu/publications/ieee_trans_8-97/FEStudy.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ieee_trans_8-97/ieee_trans_8-97.html",
}

@InProceedings{SCI:Kni2001a,
  author =    "J.M. Kniss and G. Kindlmann and C.D. Hansen",
  title =     "Interactive Volume Rendering Using
              Multi-Dimensional Transfer Functions and Direct
              Manipulation Widgets",
  booktitle = c-VIS2001,
  pages =     "255--262",
  year =      "2001",
  month =     "October",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, simian, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/jmk01/simian-paper.pdf",
}

@Article{SCI:Kni2001b,
  author =    "J.M. Kniss and P. McCormick and A. McPherson and
              J. Ahrens and J. Painter and A. Keahey and C.D.
              Hansen",
  title =     "Interactive Texture-based Volume Rendering for
              Large Datasets",
  journal =   j-CGA,
  volume =    "21",
  number =    "4",
  pages =     "52--61",
  year =      "2001",
  month =     "July/August",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, simian, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/jmk01/TRex_CGA.pdf",
}

@Article{SCI:Kni2001c,
  author =    "J.M. Kniss and P. McCormick and A. McPherson and
              J. Ahrens and J. Painter and A. Keahey and C.D.
              Hansen",
  title =     "T-Rex, Texture-based Volume Rendering for
              Extremely Large Datasets",
  journal =   j-CGA,
  volume =    "21",
  number =    "4",
  pages =     "52--61",
  year =      "2001",
  keywords =  "T-Rex, scalar field methods, volume rendering,
              t-rex",
  url =       "http://www.sci.utah.edu/publications/jmk01/Kniss_TRex2001.pdf",
}

@Article{SCI:Kni2002a,
  author =    "J.M. Kniss and G. Kindlmann and C.D. Hansen",
  title =     "Multidimensional Transfer Functions for
              Interactive Volume Rendering",
  journal =   j-TVCG,
  volume =    "8",
  number =    "3",
  pages =     "270--285",
  year =      "2002",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, simian, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/jmk02/kniss_tvcg02-small.pdf",
}

@InProceedings{SCI:Kni2002b,
  author =    "J.M. Kniss and C.D. Hansen and M. Grenier and T.
              Robinson",
  title =     "Volume Rendering Multivariate Data to Visualize
              Meteorological Simulations: A Case Study",
  booktitle = c-VISSYM2002,
  year =      "2002",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, simian, atmospherics weather meterology,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/jmk02/jmk_vissym02.pdf",
}

@InProceedings{SCI:Kni2002c,
  author =    "J.M. Kniss and S. Premoze and C.D. Hansen and D.
              Ebert",
  title =     "Interactive Translucent Volume Rendering and
              Procedural Modeling",
  booktitle = c-VIS2002,
  year =      "2002",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, simian, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/jmk02/kniss_volumeshading02.pdf",
}

@Article{SCI:Kni2003a,
  author =    "J.M. Kniss and S. Premoze and C.D. Hansen and P.
              Shirley and A. McPherson",
  title =     "A Model for Volume Lighting and Modeling",
  journal =   "{IEEE} Transactions on Visualization and Computer
              Graphics",
  volume =    "9",
  number =    "2",
  year =      "2003",
  month =     "April - June",
  url =       "http://www.sci.utah.edu/publications/jmk03/kniss_tvcg03_volshade.pdf",
}

@InProceedings{SCI:Kni2003b,
  author =    "J.M. Kniss and S. Premoze and M. Ikits and A.E.
              Lefohn and C.D. Hansen and E. Praun",
  title =     "Gaussian Transfer Functions for Multi-Field Volume
              Visualization",
  booktitle = "{IEEE} Visualization 2003",
  pages =     "497--504",
  year =      "2003",
  month =     "October",
  location =  "Seattle, Wa.",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, simian, scientific visualization,
              gaussian",
  url =       "http://www.sci.utah.edu/publications/jmk03/vis03_kniss.pdf",
}

@TechReport{SCI:Kni2003c,
  author =    "J.M. Kniss and S. Premoze and M. Ikits and A.E.
              Lefohn and C.D. Hansen",
  title =     "Closed Form Solution to the Volume Rendering
              Integral with Gaussian Transfer Functions",
  number =    "UUCS-03-013",
  year =      "2003",
  institution = "University of Utah School of Computing",
  type =      "Technical Report",
  keywords =  "scalar field methods, volume rendering, transfer
              functions, Level-set methods, level-set methods",
  url =       "http://www.sci.utah.edu/publications/jmk03/UUCS-03-013.pdf",
}

@InProceedings{SCI:Kni2004a,
  author =    "J.M. Kniss and J.P. Schulze and U. W{\"o}ssner and
              P. Winkler and U. Lang and C.D. Hansen",
  title =     "Medical Applications of Multi-field Volume
              Rendering and VR Techniques",
  booktitle = c-VISSYM2004,
  pages =     "249--254",
  year =      "2004",
  keywords =  "volume rendering, ncrr",
  url =       "http://www.sci.utah.edu/publications/jmk04/kniss04MAMF.pdf",
}

@InCollection{SCI:Kni2005a,
  author =    "J.M. Kniss and G. Kindlmann and C.D. Hansen",
  title =     "Multidimentional Transfer Functions for Volume
              Rendering",
  booktitle = "The Visualization Handbook",
  pages =     "189--210",
  year =      "2005",
  editor =    "C.D. Hansen and C.R. Johnson",
  publisher = "Elsevier",
  isbn =      "0-12-387582-X",
  keywords =  "ncrr, volume rendering, transfer functions",
  url =       "http://www.sci.utah.edu/publications/jmk05/ch09_kniss.pdf",
}

@InProceedings{SCI:Kni2005b,
  author =    "J.M. Kniss and R. Van Uitert and A.J. Stephens and
              G. Li and T. Tasdizen",
  title =     "Statistically Quantitative Volume Visualization",
  booktitle = "{IEEE} Visualization 2005",
  year =      "2005",
  keywords =  "volume rendering, transfer functions",
  url =       "http://www.sci.utah.edu/publications/jmk05/vis05_jmk.pdf",
}

@InBook{SCI:Kni2005c,
  author =    "J.M. Kniss and A.E. Lefohn and N. Fout",
  title =     "Deferred Filtering: Rendering from Difficult Data
              Formats",
  booktitle = "GPU Gems II: Programming Techniques for
              High-Performance Graphics and General-Purpose
              Computation",
  pages =     "669--677",
  year =      "2005",
  editor =    "M. Pharr and R. Fernando",
  chapter =   "41",
  publisher = "Addison Wesley",
}

@InProceedings{SCI:Kni2005d,
  author =    "J.M. Kniss and A.E. Lefohn and R. Strzodka and S.
              Sengupta and J.D. Owens",
  title =     "Octree Textures on Graphics Hardware",
  booktitle = "Proceedings of the ACM SIGGRAPH 2005 Conference on
              Abstracts and Applications",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/jmk05/OctreeTexturesonGraphicsHardware.pdf",
}

@Misc{SCI:Kni2007a,
  author =    "R.C. Knickmeyer and Y.S.K. Vetsa and S. Gouttard
              and W. Lin and D. Evans and K. Wilber and K.J.
              Smith and C. Kang and R.M. Hamer and G. Gerig and
              J.H. Gilmore",
  title =     "A Structural MRI Study of Human Brain Development
              from Birth to Age 2",
  booktitle = "American College of Neuropharmacology (ACNP) 46th
              Annual Meeting",
  year =      "2007",
  location =  "Boca Raton, FL",
  note =      "Poster presentation",
}

@Article{SCI:Kni2008a,
  author =    "R.C. Knickmeyer and S. Gouttard and C. Kang and D.
              Evans and K. Wilber and K.J. Smith and R.M. Hamer
              and W. Lin and G. Gerig and J.H. Gilmore",
  title =     "A Structural MRI Study of Human Brain Development
              from Birth to Two Years",
  journal =   "The Journal of Neuroscience",
  volume =    "28",
  number =    "47",
  pages =     "12176--12182",
  year =      "2008",
  month =     "Nov",
  pmid =      "19020011",
  url =       "http://www.sci.utah.edu/publications/knickmeyer08/Knickmeyer_Neurosci2008.pdf",
}

@Article{SCI:Kni2011a,
  author =    "R.C. Knickmeyer and C. Kang and S. Woolson and
              K.J. Smith and R.M. Hamer and W. Lin and G. Gerig
              and M. Styner and J.H. Gilmore",
  title =     "Twin-Singleton Differences in Neonatal Brain
              Structure",
  journal =   "Twin Research and Human Genetics",
  volume =    "14",
  number =    "3",
  pages =     "268--276",
  year =      "2011",
  issn =      "1832-4274",
  doi =       "10.1375/twin.14.3.268",
  url =       "http://www.sci.utah.edu/publications/knickmeyer11/Knickmeyer_nihms309699.pdf",
}

@TechReport{SCI:Kno2006a,
  author =    "A. Knoll and I. Wald and S.G. Parker and C.D.
              Hansen",
  title =     "Interactive Isosurface Ray Tracing of Large Octree
              Volumes",
  number =    "UUSCI-2006-026",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "interactive rt distributed interactive ray
              tracing, octree, rtcenter",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-026.pdf",
}

@TechReport{SCI:Kno2007a,
  author =    "A. Knoll and C.D. Hansen and I. Wald",
  title =     "Coherent Multiresolution Isosurface Ray Tracing",
  number =    "UUSCI-2007-001",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "vacet",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-001.pdf",
}

@TechReport{SCI:Kno2007b,
  author =    "A. Knoll and Y. Hijazi and C.D. Hansen and I. Wald
              and H. Hagen",
  title =     "Interactive Ray Tracing of Arbitrary Implicit
              Functions",
  number =    "UUSCI-2007-002",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, vacet",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-002.pdf",
}

@InProceedings{SCI:Kno2007c,
  author =    "A. Knoll and Y. Hijazi and C.D. Hansen and I. Wald
              and H. Hagen",
  title =     "Interactive Ray Tracing of Arbitrary Implicits
              with SIMD Interval Arithmetic",
  booktitle = "Proceedings of 2nd IEEE/EG Symposium on
              Interactive Ray Tracing 2007",
  pages =     "11--18",
  year =      "2007",
  location =  "Ulm, Germany",
  keywords =  "parallel visualization, interactive ray tracing",
  url =       "http://www.sci.utah.edu/publications/knoll07/rtia-rt07.pdf",
}

@TechReport{SCI:Kno2007d,
  author =    "A. Knoll and Y. Hijazi and A. Kensler and M.
              Schott and C.D. Hansen and H. Hagen",
  title =     "Fast and Robust Ray Tracing of General Implicits
              on the GPU",
  number =    "UUSCI-2007-014",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ray tracing, GPU",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-014.pdf",
}

@Article{SCI:Kno2009a,
  author =    "A. Knoll and I. Wald and C.D. Hansen",
  title =     "Coherent Multiresolution Isosurface Ray Tracing",
  journal =   "The Visual Computer",
  volume =    "25",
  number =    "3",
  pages =     "209--225",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/knoll08/cohoctiso.pdf",
}

@Article{SCI:Kno2009b,
  author =    "A. Knoll and Y. Hijazi and C.D. Hansen and I. Wald
              and H. Hagen",
  title =     "Fast Ray Tracing of Arbitrary Implicit Surfaces
              with Interval and Affine Arithmetic",
  journal =   "Computer Graphics Forum",
  volume =    "28",
  number =    "1",
  pages =     "26--40",
  year =      "2009",
  keywords =  "rt, irt, interactive ray-tracing",
  url =       "http://www.sci.utah.edu/publications/knoll09/CGF-implicits-2009.pdf",
}

@InProceedings{SCI:Kno2009c,
  author =    "A. Knoll and Y. Hijazi and R. Westerteiger and M.
              Schott and C.D. Hansen and H. Hagen",
  title =     "Volume Ray Tracing with Root-Finding and
              Differential Sampling",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics, Proceedings of the 2009 IEEE
              Visualization Conference",
  pages =     "(accepted)",
  year =      "2009",
  month =     "Sept/Oct",
  url =       "http://www.sci.utah.edu/publications/knoll09/Knoll_avrc2009.pdf",
}

@Article{SCI:Kno2009d,
  author =    "A. Knoll and Y. Hijazi and R. Westerteiger and M.
              Schott and C.D. Hansen and Hans Hagen",
  title =     "Volume Ray Casting with Peak Finding and
              Differential Sampling",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "15",
  number =    "6",
  pages =     "1571-1578",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/knoll09/Knoll_TVCG2009.pdf",
}

@InProceedings{SCI:Kno2011a,
  author =    "A. Knoll and S. Thelen and I. Wald and C.D. Hansen
              and H. Hagen and M.E. Papka",
  title =     "Full-Resolution Interactive CPU Volume Rendering
              with Coherent BVH Traversal",
  booktitle = "Proceedings of IEEE Pacific Visualization 2011",
  pages =     "(to appear)",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/knoll11/PacificVis2011.pdf",
}

@InProceedings{SCI:Koo2008a,
  author =    "D. Koop and C.E. Scheidegger and S.P. Callahan and
              J. Freire and C.T. Silva",
  title =     "VisComplete: Automating Suggestions for
              Visualization Systems",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (Proceedings of IEEE Visualization
              2008)",
  volume =    "14",
  number =    "6",
  pages =     "1691--1698",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/koop08/vis2008a.pdf",
}

@InProceedings{SCI:Kop2012a,
  author =    "D. Kopta and T. Ize and J. Spjut and E. Brunvand
              and A. Davis and A. Kensler",
  title =     "Fast, Effective BVH Updates for Animated Scenes",
  booktitle = "Proceedings of the Symposium on Interactive 3D
              Graphics and Games (I3D '12)",
  pages =     "(to appear)",
  year =      "2012",
  url =       "http://www.sci.utah.edu/publications/kopta12/Kopta_I3D2012.pdf",
}

@TechReport{SCI:Kos2006a,
  author =    "P.A. Koshevoy and T. Tasdizen and R.T. Whitaker",
  title =     "Implementation of an Automatic Slice-to-Slice
              Registration Tool",
  number =    "UUSCI-2006-018",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing, warping,
              deformable image registration, TEM, SIFT, crcns,
              tem, sift",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-018.pdf",
}

@TechReport{SCI:Kos2006b,
  author =    "P.A. Koshevoy and T. Tasdizen and R.T. Whitaker",
  title =     "Implementation of an Automatic Image Registration
              Tool",
  number =    "UUSCI-2006-020",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing, warping,
              deformable image registration, tem, sift, crcns",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-020.pdf",
}

@InProceedings{SCI:Kos2006c,
  author =    "P. Koshevoy and T. Tasdizen and R.T. Whitaker and
              B. Jones and R. Marc",
  title =     "Assembly of Large Three-Dimensional Volumes from
              Serial-Section Transmission Electron Microscopy",
  booktitle = "Proceedings of 2006 MICCAI Workshop on Microscopic
              Image Analysis with Applications in Biology",
  year =      "2006",
  month =     "October",
  keywords =  "ip image processing signal processing, warping,
              deformable image registration, crcns",
  url =       "http://www.sci.utah.edu/publications/koshevoy06/paper9tasdizen.pdf",
}

@TechReport{SCI:Kos2007a,
  author =    "P.A. Koshevoy and T. Tasdizen and R.T. Whitaker",
  title =     "Automatic Assembly of TEM Mosaics and Mosaic
              Stacks Using Phase Correlation",
  number =    "UUSCI-2007-004",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing, warping,
              deformable image registration, ip gp image
              processing goemetry processing, crcns",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-004.pdf",
}

@InProceedings{SCI:Kre1997a,
  author =    "M. van Kreveld and R. van Oostrum and C. Bajaj and
              V. Pascucci and D.R. Schikore",
  title =     "Contour Trees and Small Seed Sets for Isosurface
              Traversal",
  booktitle = "Proceedings of the 13th International Annual
              Symposium on Computational Geometry ({SCG}-97)",
  pages =     "212--220",
  year =      "1997",
  publisher = "ACM Press",
  address =   "New York",
  month =     "June",
  isbn =      "0-89791-878-9",
}

@Article{SCI:Kri2004a,
  author =    "L. Krishnan and J.A. Weiss and M.D. Wessman MD and
              J.B. Hoying",
  title =     "Design and Application of a Test System for
              Viscoelastic Characterization of Collagen Gels",
  journal =   j-TE,
  volume =    "10",
  number =    "(1-2)",
  pages =     "241--252",
  year =      "2004",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational mechanics, computational
              biomechanics, angiogenesis",
  url =       "http://www.sci.utah.edu/publications/krishnan04/krishnan_tissue_eng_2004.pdf",
}

@Article{SCI:Kri2008a,
  author =    "L. Krishnan and C.J. Underwood and S.A. Maas and
              B.J. Ellis and T.C. Kode and J.B. Hoying and J.A.
              Weiss",
  title =     "Effect of Mechanical Boundary Conditions on
              Orientation of Angiogenic Microvessels",
  journal =   "Cardiovascular Research",
  volume =    "78",
  number =    "2",
  pages =     "324--332",
  year =      "2008",
  keywords =  "mrl, angiogenesis, bioengineering",
  url =       "http://www.sci.utah.edu/publications/krishnan08/krishnan_cardio_res_2008.pdf",
}

@Article{SCI:Kri2008b,
  author =    "L. Krishnan and J.B. Hoying and H. Ngyuen and H.
              Song and J.A. Weiss",
  title =     "Interaction of Angiogenic Microvessels with the
              Extracellular Matrix",
  journal =   "American Journal of Physiology: Heart and
              Circulation Physiology",
  volume =    "293",
  number =    "6",
  pages =     "H3650--H36588",
  year =      "2007",
}

@Article{SCI:Kro97a,
  author =    "M. Krogh and J. Painter and C.D. Hansen",
  title =     "Parallel Sphere Rendering",
  journal =   "Parallel Computing",
  volume =    "23",
  number =    "7",
  pages =     "961--974",
  year =      "1997",
}

@Article{SCI:Kru2008a,
  author =    "J. Krueger",
  title =     "A GPU Framework for Interactive Simulation and
              Rendering of Fluid Effects",
  journal =   "IT - Information Technology",
  volume =    "4",
  pages =     "265--268",
  year =      "2008",
  keywords =  "fluid dynamics, cfd",
  url =       "http://www.sci.utah.edu/publications/krueger08/GPU_framework.pdf",
}

@InProceedings{SCI:Kru2008b,
  author =    "J. Krueger and K. Potter and R.S. MacLeod and C.R.
              Johnson",
  title =     "Unified Volume Format: A General System For
              Efficient Handling Of Large Volumetric Datasets",
  booktitle = "Proceedings of IADIS Computer Graphics and
              Visualization 2008 (CGV 2008)",
  pages =     "(accepted)",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/krueger08/UnifiedVolumeFormat.pdf",
}

@InProceedings{SCI:Kru2009a,
  author =    "J. Kruger and T. Fogal",
  title =     "Focus and Context - Visualization without the
              Complexity",
  booktitle = "Proceedings of the World Congress on Medical
              Physics and Biomedical Engineering, September 7 -
              12, 2009, Munich, Germany",
  volume =    "25/13",
  pages =     "44--48",
  year =      "2009",
  series =    "IFMBE Proceedings",
  publisher = "Springer Berlin Heidelberg",
  url =       "http://www.sci.utah.edu/publications/fogal09/Fogal_IFMBE2009a.pdf",
}

@InProceedings{SCI:Kru2010a,
  author =    "J. Krueger",
  title =     "A new sampling scheme for slice based volume
              rendering",
  booktitle = "Proceedings of IEEE/EG International Symposium on
              Volume Graphics (2010)",
  pages =     "(accepted)",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/krueger10/Krueger_vg2010.pdf",
}

@Article{SCI:Kub2008a,
  author =    "M. Kubicki and M. Styner and S. Bouix and G. Gerig
              and D. Markant and K. Smith and R. Kikinis and R.W.
              McCarley and M.E. Shenton",
  title =     "Reduced Interhemispheric Connectivity in
              Schizophrenia- Tractography Based Segmentation of
              the Corpus Callosum",
  journal =   "Schizophrenia Research",
  volume =    "106",
  number =    "2-3",
  pages =     "125--131",
  year =      "2008",
  month =     "December",
}

@Article{SCI:Kum2006a,
  author =    "G. Kumfert and D.E. Bernholdt and T.G.W. Epperly
              and J.A. Kohl and L.C. McInnes and S.G. Parker and
              J. Ray",
  title =     "How the Common Component Architecture Advances
              Computational Science",
  journal =   "J. Phys.: Conf. Ser.",
  volume =    "46",
  pages =     "479--493",
  year =      "2006",
  keywords =  "ncrr, Common Component Architecture, CCA",
  url =       "http://www.sci.utah.edu/publications/kumfert06/jpconf6_46_066.pdf",
}

@InProceedings{SCI:Kum2010a,
  author =    "S. Kumar and V. Vishwanath and P. Carns and V.
              Pascucci and R. Latham and T. Peterka and M. Papka
              and R. Ross",
  title =     "Towards Efficient Access of Multi-dimensional,
              Multi-resolution Scientific Data",
  booktitle = "Proceedings of the 5th Petascale Data Storage
              Workshop, Supercomputing 2010",
  pages =     "(in press)",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/kumar10/pdsw10-paper21.pdf",
}

@InProceedings{SCI:Kum2011a,
  author =    "S. Kumar and V. Vishwanath and P. Carns and B.
              Summa and G. Scorzelli and V. Pascucci and R. Ross
              and J. Chen and H. Kolla and R. Grout",
  title =     "{PIDX}: Efficient Parallel {I/O} for
              Multi-resolution Multi-dimensional Scientific
              Datasets",
  booktitle = "Proceedings of The {IEEE} International Conference
              on Cluster Computing",
  pages =     "103--111",
  year =      "2011",
  month =     "September",
  url =       "http://www.sci.utah.edu/publications/kumar11/Kumar_ICCC2011.pdf",
}

@Article{SCI:Kup2010a,
  author =    "S.S. Kuppahally and N. Akoum and N.S. Burgon and
              T.J. Badger and E.G. Kholmovski and S. Vijayakumar
              and S.N. Rao and J. Blauer and E.N. Fish and E.V.
              Dibella and R.S. Macleod and C. McGann and S.E.
              Litwin and N.F. Marrouche",
  title =     "Left atrial strain and strain rate in patients
              with paroxysmal and persistent atrial fibrillation:
              relationship to left atrial structural remodeling
              detected by delayed-enhancement MRI",
  journal =   "Circ Cardiovasc Imaging",
  volume =    "3",
  number =    "3",
  pages =     "231--239",
  year =      "2010",
  pmid =      "20133512",
  keywords =  "cvrti",
  url =       "http://www.sci.utah.edu/publications/kuppahally10/Kuppahally_CircCardImaging2010.pdf",
}

@InProceedings{SCI:Lag2002a,
  author =    "I. Lagzi and A.S. Tomlin and T. Turanyi and L.
              Haszpra and R. Meszaros and M. Berzins",
  title =     "Modelling Tropospheric Ozone Formation in Hungary
              Using an Adaptive Gridding Method",
  booktitle = "Proceedings from the EUROTRAC-2 Symposium 2002",
  year =      "2002",
  editor =    "Garmisch-Partenkirchen, P.M. Midgley and M.
              Reuters",
  keywords =  "atmospherics, ozone, environment, pollution",
  url =       "http://www.sci.utah.edu/publications/lagzi02/Lagzi_Eurotrac2_2002.pdf",
}

@InProceedings{SCI:Lag2002b,
  author =    "I. Lagzi and A.S. Tomlin and T. Turanyi and L.
              Haszpra and R. Meszaros and M. Berzins",
  title =     "Modeling Photochemical Air Pollution in Hungary
              Using an Adaptive Grid Model",
  booktitle = "Air Pollution modeling and Simulation - Proc.2nd
              International Conference on Air Pollution Modeling
              and Simulation (APMS'2001)",
  pages =     "264--273",
  year =      "2002",
  month =     "april",
  isbn =      "3540425152, 9783540425151",
  keywords =  "atmospherics, pollution, environment, adaptive
              grid modeling",
  url =       "http://www.sci.utah.edu/publications/lagzi02/48_Lagzi_APMS_2002.PDF",
}

@InProceedings{SCI:Lai2001a,
  author =    "D.H. Laidlaw and R.M. Kirby and J.S. Davidson and
              T.S. Miller and M. da Silva and W.H. Warren and M.
              Tarr",
  title =     "Quantitative Comparative Evaluation of 2D Vector
              Field Visualization Methods",
  booktitle = "Proceedings of IEEE Visualization 2001",
  pages =     "143--150",
  year =      "2001",
  month =     "October",
  location =  "San Diego, CA",
}

@Article{SCI:Lai2005a,
  author =    "D.H. Laidlaw and R.M. Kirby and C.D. Jackson and
              J.S. Davidson and T.S. Miller and M. Silva and W.H.
              Warren and M. Tarr",
  title =     "Comparing 2D Vector Field Visualization Methods: A
              User Study",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "11",
  number =    "1",
  pages =     "59--70",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/laidlaw05/Laidlaw_VCG2005.pdf",
}

@InProceedings{SCI:Lam2003a,
  author =    "E. Lamar and V. Pascucci",
  title =     "A Multi-Layered Image Cache For Scientific
              Visualization",
  booktitle = "Proceedings of IEEE Symposium on Parallel and
              Large-Data Visualization and Graphics",
  pages =     "61--68",
  year =      "2003",
  month =     "October",
  note =      "UCRL-JC-152963",
}

@InProceedings{SCI:Lan2003a,
  author =    "M. Langbein and G. Scheuermann and X. Tricoche",
  title =     "An Efficient Point Location Method for
              Visualization in Large Unstructured Grids",
  booktitle = "Proceedings of Vision, Modeling, and Visualization
              2003",
  pages =     "27--36",
  year =      "2003",
  publisher = "IOS Press",
  url =       "http://www.sci.utah.edu/publications/langbein03/location.pdf",
}

@InProceedings{SCI:Lan2004a,
  author =    "D. Laney and V. Pascucci",
  title =     "Progressive Compression of Volumetric Subdivision
              Meshes",
  booktitle = "Proceedings of the International Symposium on 3D
              Data Processing, Visualization, and Transmission
              (3DPVT)",
  pages =     "293--300",
  year =      "2004",
  month =     "September",
  note =      "UCRL-CONF-203679",
}

@InProceedings{SCI:Lan2005a,
  author =    "D. Laney and S.P. Callahan and N. Max and C.T.
              Silva and S. Langer and R. Frank",
  title =     "Hardware-Assisted Simulated Radiography",
  booktitle = c-VIS2005,
  pages =     "44",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/laney05/radiography.pdf",
}

@Article{SCI:Lan2007a,
  author =    "D. Laney and P.-T. Bremer and A. Mascarenhas and
              P. Miller and V. Pascucci",
  title =     "Understanding the Structure of the Turbulent
              Mixing Layer in Hydrodynamic Instabilities",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "13",
  number =    "1",
  pages =     "1053--1060",
  year =      "2007",
  month =     "January",
}

@Article{SCI:Lan2010a,
  author =    "N. Lange and M.B. Dubray and J.E. Lee and M.P.
              Froimowitz and A. Froehlich and N. Adluru and B.
              Wright and C. Ravichandran and P.T. Fletcher and
              E.D. Bigler and A.L. Alexander and J.E. Lainhart",

  title =     "Atypical diffusion tensor hemispheric asymmetry in
              autism",
  journal =   "Autism Research",
  volume =    "3",
  number =    "6",
  pages =     "350--358",
  year =      "2010",
  doi =       "10.1002/aur.162",
  pmid =      "21182212",
  url =       "http://www.sci.utah.edu/publications/lange10/Lange_AutismRes2010a.pdf",
}

@Article{SCI:Law91a,
  author =    "J. Lawson and M. Berzins and P.M. Dew",
  title =     "Balancing Space and Time Errors in the Method of
              Lines for Parabolic Equations",
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "12",
  number =    "3",
  pages =     "573--594",
  year =      "1991",
}

@InProceedings{SCI:Law92a,
  author =    "J. Lawson and M. Berzins",
  title =     "Towards an Automatic Algorithm for the Numerical
              Solution of Parabolic P.D.E.s Using the Method of
              Lines",
  booktitle = "proc of I.M.A. 1989 O.D.E. Conference",
  pages =     "309--322",
  year =      "1992",
  editor =    "I. Gladwell, J. Cash and A. Iserles",
  publisher = "Oxford University Press",
  isbn =      "0-19-853659-3",
}

@Article{SCI:Laz2003a,
  author =    "M. Lazar and D.M. Weinstein and J.S. Tsuruda and 
              K.M. Hasan and K. Arfanakis and E. Meyer and B.
              Badie and H.A. Rowley and V. Haughton and A. Field
              and A.L. Alexander",
  title =     "White Matter Tractography Using Diffusion Tensor
              Deflection",
  journal =   "Human Brain Mapping",
  volume =    "18",
  pages =     "306--321",
  year =      "2003",
  keywords =  "tensor field methods, diffusion tensor imaging,
              Scientific visualization",
  url =       "http://www.sci.utah.edu/publications/lazar03/lazar.hbm.03.pdf",
}

@TechReport{SCI:Lef2002a,
  author =    "A.E. Lefohn and R.T. Whitaker",
  title =     "A {GPU}-Based, Three-Dimensional Level Set Solver
              with Curvature Flow",
  number =    "UUCS-02-017",
  year =      "2002",
  institution = "University of Utah School of Computing",
  type =      "Technical Report",
  keywords =  "ip image processing signal processing,
              segmentation, imaging, level set, level-set
              methods, level-sets",
  url =       "http://www.sci.utah.edu/publications/lefohn02/UUCS-02-017.pdf",
}

@InProceedings{SCI:Lef2003a,
  author =    "A.E. Lefohn and J.M. Kniss and C.D. Hansen and
              R.T. Whitaker",
  title =     "Interactive Deformation and Visualization of Level
              Set Surfaces Using Graphics Hardware",
  booktitle = "{IEEE} Visualization 2003",
  pages =     "75--82",
  year =      "2003",
  month =     "October",
  location =  "Seattle, Wa.",
  keywords =  "ip image processing signal processing,
              segmentation, imaging, level-set methods,
              level-sets",
  url =       "http://www.sci.utah.edu/publications/lefohn03/visLevelSetPaper.pdf",
}

@TechReport{SCI:Lef2003b,
  author =    "A.E. Lefohn and J. Cates and R.T. Whitaker",
  title =     "Interactive, {GPU}-Based Level Sets for 3D Brain
              Tumor Segmentation",
  number =    "UUCS-03-004",
  year =      "2003",
  institution = "University of Utah School of Computing",
  type =      "Technical Report",
  keywords =  "ip image processing signal processing,
              segmentation, imaging, level-set methods,
              level-sets",
  url =       "http://www.sci.utah.edu/publications/lefohn03/UUCS-03-004.pdf",
}

@Article{SCI:Lef2003d,
  author =    "A.E. Lefohn and R.T. Caruso and E. Reinhard and B.
              Budge and P. Shirley",
  title =     "An Ocularist's Approach to Human Iris Synthesis",
  journal =   "{IEEE} Computer Graphics and Applications",
  volume =    "23",
  number =    "6",
  pages =     "70--75",
  year =      "2003",
  keywords =  "human iris rendering, photorealistic rendering,",
  url =       "http://www.sci.utah.edu/publications/lefohn03/irisSynthesis.pdf",
}

@TechReport{SCI:Lef2003e,
  author =    "A.E. Lefohn and J.M. Kniss and C.D. Hansen and 
              R.T. Whitaker",
  title =     "Interactive Deformation and Visualization of Level
              Set Surfaces Using Graphics Hardware",
  number =    "UUCS-03-005",
  year =      "2003",
  institution = "University of Utah School of Computing",
  type =      "Technical Report",
  keywords =  "ip image processing signal processing,
              segmentation, imaging, level-set methods,
              level-sets",
  url =       "http://www.sci.utah.edu/publications/lefohn03/UUCS-03-005.pdf",
}

@Article{SCI:Lef2003f,
  author =    "A.E. Lefohn and J. Cates and R.T. Whitaker",
  title =     "Interactive, {GPU}-Based Level Sets for 3D
              Segmentation",
  journal =   "Medical Image Computing and Computer Assisted
              Intervention ({MICCAI})",
  pages =     "564--572",
  year =      "2003",
  keywords =  "ip image processing signal processing,
              segmentation, insight itk, imaging, level-set
              methods, level-sets",
  url =       "http://www.sci.utah.edu/publications/lefohn03/gpuTumorSeg.pdf",
}

@Article{SCI:Lef2004a,
  author =    "A.E. Lefohn and J.M. Kniss and C.D. Hansen and
              R.T. Whitaker",
  title =     "A Streaming Narrow-Band Algorithm: Interactive
              Deformation and Visualization of Level Sets",
  journal =   j-TVCG,
  pages =     "422--433",
  year =      "2004",
  keywords =  "scalar field methods, volume rendering, ip image
              processing signal processing, segmentation, surface
              processing, Imaging, modeling, GPU, level-set
              methods, imaging, deformable models, gpu, level-set
              methods level-sets, streaming computation, virtual
              memory, ncrr",
  url =       "http://www.sci.utah.edu/publications/lefohn04/lefohn_tvcg03.pdf",
}

@InBook{SCI:Lef2005a,
  author =    "A.E. Lefohn and J.M. Kniss and J. Owens",
  title =     "Implementing Efficient Parallel Data Structures on
              GPUs",
  booktitle = "GPU Gems II: Programming Techniques for
              High-Performance Graphics and General-Purpose
              Computation",
  pages =     "521--545",
  year =      "2005",
  editor =    "M. Pharr and R. Fernando",
  chapter =   "33",
  publisher = "Addison Wesley",
}

@InProceedings{SCI:Lef2005b,
  author =    "A.E. Lefohn and S. Sengupta and J.M. Kniss and R.
              Strzodka and J.D. Owens",
  title =     "Dynamic Adaptive Shadow Maps on Graphics
              Hardware",
  booktitle = "Proceedings of the ACM SIGGRAPH 2005 Conference on
              Abstracts and Applications",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/lefohn05/DynamicAdaptiveShadowMapsonGraphicsHardware.pdf",
}

@Article{SCI:Lef2006a,
  author =    "A. Lefohn and J.M. Kniss and R. Strzodka and S.
              Sengupta and J. Owens",
  title =     "Glift: Generic, Efficient Random-Access GPU Data
              Structures",
  journal =   j-ACM-CG,
  volume =    "25",
  number =    "1",
  pages =     "1--37",
  year =      "2006",
  month =     "January",
  keywords =  ", adaptive shadow maps, data structures, graphics
              hardware, GPU, GPGPU, multiresolution, octree
              textures, parallel computation",
  url =       "http://www.sci.utah.edu/publications/lefohn06/tog-05-0077.pdf",
}

@Article{SCI:Leg2001a,
  author =    "I. Lagzi and A.S. Tomlin and T.Turanyi and
              L.Haszpra and M.Berzins",
  title =     "The Simulation of Photochemical Smog Episodes in
              Hungary and Central Europe Using Adaptive Gridding
              Models",
  journal =   "Lecture Notes in Computer Science (LCNS),
              Computational Science - ICCS 2001",
  volume =    "2074/2001",
  pages =     "67--76",
  year =      "2001",
  publisher = "Springer Berlin / Heidelberg",
  isbn =      "978-3-540-42233-4",
  keywords =  "atmospherics, pollution, environment, adaptive
              grid modeling",
  url =       "http://www.sci.utah.edu/publications/lagzi01/lagzi_lncs_2001.pdf",
}

@InProceedings{SCI:Len2011a,
  author =    "Z. Leng and J.R. Korenberg and B. Roysam and T.
              Tasdizen",
  title =     "A rapid 2-D centerline extraction method based on
              tensor voting",
  booktitle = "2011 IEEE International Symposium on Biomedical
              Imaging: From Nano to Macro",
  pages =     "1000--1003",
  year =      "2011",
  doi =       "10.1109/ISBI.2011.5872570",
  url =       "http://www.sci.utah.edu/publications/leng11/Leng_ISBI2011.pdf",
}

@Article{SCI:Leu2003a,
  author =    "C.H. Leung and M. Berzins",
  title =     "A Computational Model for Organism Growth based on
              Surface Mesh Generation",
  journal =   "Journal of Computational Physics",
  volume =    "188",
  number =    "1",
  pages =     "75--99",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/leung03/JCPmgen.pdf",
}

@Article{SCI:Lev1997a,
  author =    "A.L. Levy and T.J. Schaewe and M.I. Miller and
              K.R. Smith and A.M. Hammoud and J.M. Henderson and
              S. Joshi and K.E. Mark and C.D. Sturm and L.L.
              McDurmont Jr and R. Bucholz",
  title =     "An Internet-Connected, Patient-Specific,
              Deformable Brain Atlas Integrated into a Surgical
              Navigation System",
  journal =   "J Digit Imaging",
  volume =    "10",
  number =    "3 (Suppl. 1)",
  pages =     "231--237",
  year =      "1997",
  month =     "August",
}

@Article{SCI:Lev2010a,
  author =    "J.A. Levine and D.J. Swenson and Z. Fu and R.S.
              MacLeod and R.T. Whitaker",
  title =     "A Comparison of Delaunay Based Meshing Algorithms
              for Electrophysiological Cardiac Simulations",
  journal =   "Virtual Physiological Human",
  pages =     "181--183",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/levine10/Levine_VPH2010.pdf",
}

@InProceedings{SCI:Lew2005a,
  author =    "S. Lew and C. Wolters and K. Lee and S. Makeig and
              G. Worrell and R.S. MacLeod",
  title =     "Epileptogenic Source Localization For Open Skull
              Head Model of Epilepsy By Independent Component
              Analysis And Inverse Dipole Fit Method",
  booktitle = "1st Annual Mountain West Biomedical Engineering
              Conference",
  year =      "2005",
  keywords =  "source localization, EEG, ICA, dipole fit, ncrr,
              forward problems inverse problems forward
              simulation inverse solutions, inverse eeg, eeg,
              ica",
}

@InProceedings{SCI:Lew2007a,
  author =    "S. Lew and C. Wolters and A. Anwander and S.
              Makeig and R.S. MacLeod",
  title =     "Low Resolution Conductivity Estimation to Improve
              Source Localization",
  booktitle = "New Frontiers in Biomagnetism. Proceedings of the
              15th International Conference on Biomagnetism,
              Vancouver, BC, Canada, August 21-25, 2006.",
  volume =    "1300",
  pages =     "149--152",
  year =      "2007",
  series =    "International Congress Series",
  month =     "June",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, source localization,
              ncrr",
  url =       "http://www.sci.utah.edu/publications/lew07/Lew_ICB2006.pdf",
}

@Article{SCI:Lew2008a,
  author =    "S. Lew and C.H. Wolters and A. Anwander and S.
              Makeig and R.S. Macleod",
  title =     "Improved EEG Source Analysis Using Low-Resolution
              Conductivity Estimation in a Four-Compartment
              Finite Element Head Model",
  journal =   "Human Brain Mapping",
  volume =    "31",
  year =      "2008",
  month =     "December",
  url =       "http://www.sci.utah.edu/publications/lew08/LewEtAl_HumanBrainMapping_2009.pdf",
}

@Article{SCI:Lew2009a,
  author =    "S. Lew and C.H. Wolters and T. Dierkes and C.
              R{\"o}er and R.S. MacLeod",
  title =     "Accuracy and run-time comparison for different
              potential approaches and iterative solvers in
              finite element method based EEG source analysis",
  journal =   "Applied Numerical Mathematics",
  volume =    "59",
  pages =     "1970--1988",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/lew09/Lew_ANM2009.pdf",
}

@Article{SCI:Lew2009b,
  author =    "S. Lew and C.H. Wolters and A. Anwander and S.
              Makeig and R.S. MacLeod",
  title =     "Improved EEG Source Analysis Using Low-Resolution
              Conductivity Estimation in a Four-Compartment
              Finite Element Head Model",
  journal =   "Human Brain Mapping",
  volume =    "30",
  pages =     "2862--2878",
  year =      "2009",
  keywords =  "EEG, source analysis, realistic four-compartment
              head modeling, in vivo conductivity estimation,
              brain and skull conductivity, cerebrospinal fluid,
              simulated annealing, finite element method,
              somatosensory-evoked potentials, T1- and
              PD-weighted MRI",
  url =       "http://www.sci.utah.edu/publications/lew09/Lew_HBM2009.pdf",
}

@InProceedings{SCI:Li2003a,
  author =    "G. Li and U.D. Bordoloi and H. Shen",
  title =     "Chameleon: An Interactive Texture-based Rendering
              Framework for Visualizing Three-dimensional Vector
              Fields",
  booktitle = "Proceedings of {IEEE} Visualization 2003",
  pages =     "32",
  year =      "2003",
  month =     "Oct",
  keywords =  "scalar field methods, vector field methods, tensor
              field methods, atmospherics weather meterology,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/li03/chameleon2003.pdf",
}

@InProceedings{SCI:Li2006a,
  author =    "G. Li and X. Tricoche and C.D. Hansen",
  title =     "GPUFLIC: Interactive and Accurate Dense
              Visualization of Unsteady Flows",
  booktitle = "Proceedings of Euro Vis 2006",
  pages =     "29--34",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/li06/eurovis06.pdf",
}

@InProceedings{SCI:Li2006b,
  author =    "G. Li and X. Tricoche and C.D. Hansen",
  title =     "Survey of Texture-based Techniques in Flow
              Visualization",
  booktitle = "VIsualization of Large and Unstructured Data Sets
              - Applications in Geospatial Planning, Modeling,
              and Engineering",
  pages =     "11--21",
  year =      "2006",
  series =    "Lecture Notes in Informatics - Visualization of
              Large and Unstructured Data Sets. First workshop of
              the DFG's International Research Training Group",
  edition =   "GI-Edition",
  month =     "June",
  location =  "Dagstuhl, Germany",
}

@TechReport{SCI:Li2007a,
  author =    "G.-S. Li and X. Tricoche and C.D. Hansen",
  title =     "Visualizing Unsteady Flows on Surfaces Using
              Spherical Parameterization",
  number =    "UUSCI-2007-013",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "vector field methods, cardiac heart, bioelectric
              fields",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-013.pdf",
}

@Article{SCI:Li2008a,
  author =    "G.-S. Li and X. Tricoche and D. Weiskopf and C.D.
              Hansen",
  title =     "Flow Charts: Visualization of Vector Fields on
              Arbitrary Surfaces",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "14",
  number =    "5",
  pages =     "1--14",
  year =      "2008",
  month =     "September/October",
  url =       "http://www.sci.utah.edu/publications/li08/flowcharts.pdf",
}

@InProceedings{SCI:Li2008b,
  author =    "G.-S. Li and X. Tricoche and C.D. Hansen",
  title =     "Physically-based Dye Advection for Flow
              Visualization",
  booktitle = "Proceedings of Eurographics/IEEE-VGTC Symposium on
              Visualization 2008",
  volume =    "27",
  number =    "3",
  pages =     "727--734",
  year =      "2008",
  editor =    "A. Vilanova, A. Telea, G. Scheuermann, and T.
              Moeller",
  url =       "http://www.sci.utah.edu/publications/li08/dyeadvection.pdf",
}

@Article{SCI:Li2010a,
  author =    "G. Li and R. Palmer and M. DeLisi and G.
              Gopalakrishnan and R.M. Kirby",
  title =     "Formal Specification of MPI 2.0: Case Study in
              Specifying a Practical Concurrent Programming
              API",
  journal =   "Science of Computer Programming",
  pages =     "(accepted)",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/li10/Li_MPI20-spec_abstract.pdf",
}

@Article{SCI:Li2011a,
  author =    "G. Li and R. Palmer and M. DeLisi and G.
              Gopalakrishnan and R.M. Kirby",
  title =     "Formal Specification of MPI 2.0: Case Study in
              Specifying a Practical Concurrent Programming
              API",
  journal =   "Science of Computer Programming",
  volume =    "76",
  pages =     "65--81",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/li11/Li_SCP2011.pdf",
}

@InProceedings{SCI:Lin2001a,
  author =    "P. Lindstrom and V. Pascucci",
  title =     "Visualization of Large Terrains Made Easy",
  booktitle = "Proceedings of the 12th Annual {IEEE} Conference
              on Visualization ({VIS}-01)",
  pages =     "363--370, 574",
  year =      "2001",
  organization = "IEEE Computer Society",
  month =     "October 21-26",
  location =  "San Diego, CA",
  note =      "UCRL-JC-144753",
}

@Article{SCI:Lin2002a,
  author =    "P. Lindstrom and V. Pascucci",
  title =     "Terrain Simplification Simplified: A General
              Framework for View-Dependent Out-of-Core
              Visualization",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "8",
  number =    "3",
  pages =     "239--254",
  year =      "2002",
  month =     "July-September",
  note =      "UCRL-JC-147847",
}

@InProceedings{SCI:Lin2002b,
  author =    "L. Linsen and V. Pascucci and M.A. Duchaineau and
              B. Hamann and K.I. Joy",
  title =     "Hierarchical Representation of Time-varying Volume
              Data with 4th-root-of-2 Subdivision and
              Quadrilinear {B}-spline Wavelets",
  booktitle = "Proceedings of Tenth Pacific Conference on
              Computer Graphics and Applications",
  pages =     "346--355",
  year =      "2002",
  location =  "Beijing, China",
  note =      "UCRL-JC-151063",
}

@InProceedings{SCI:Lin2004a,
  author =    "L. Linsen and V. Pascucci and M.A. Duchaineau and
              B. Hamann and K.I. Joy",
  title =     "Wavelet-Based Multiresolution with
              N-th-Root-of-2",
  booktitle = "Geometric Modeling, Dagstuhl 2002. Proceedings of
              the Dagstuhl Seminar on Geometric Modeling",
  year =      "2004",
  address =   "Dagstuhl, Germany",
  month =     "May",
  note =      "UCRL-PROC-208699",
}

@InBook{SCI:Lin2004b,
  author =    "L. Linsen and J.T. Gray and V. Pascucci and M.A.
              Duchaineau and B. Hamann and K.I. Joy",
  title =     "Geometric Modeling for Scientific Visualization",
  pages =     "259--378",
  year =      "2004",
  editor =    "G. Brunnett, B. Hamann, and H. Mueller",
  chapter =   "Hierarchical Large-scale Volume Representation
              with 3rd-root-of-2 Subdivision and Trivariate
              B-spline Wavelets",
  series =    "Mathematics and Visualization",
  publisher = "Springer-Verlag",
  address =   "Heidelberg, Berlin",
  month =     "February",
  note =      "UCRL-JC-146824",
}

@InProceedings{SCI:Lin2004c,
  author =    "L. Linsen and V. Pascucci and M.A. Duchaineau and
              B. Hamann and K.I. Joy",
  title =     "Wavelet-Based Multiresolution with
              n-th-root-of-2",
  booktitle = "Proceedings of Geometric Modeling, Dagstuhl
              2002",
  year =      "2004",
  month =     "May",
  location =  "Dagstuhl, Germany",
  note =      "UCRL-PROC-208699",
}

@InProceedings{SCI:Lin2008a,
  author =    "L. Lins and D. Koop and E.W. Anderson and S.P.
              Callahan and E. Santos and C.E. Scheidegger and J.
              Freire and C.T. Silva",
  title =     "Examining Statistics of Workflow Evolution
              Provenance: A First Study",
  booktitle = "Proceedings of the 20th International Conference
              on Scientific and Statistical Database Management
              (SSDBM)",
  pages =     "(accepted)",
  year =      "2008",
  keywords =  "vistrails, provenance, workflow management",
  url =       "http://www.sci.utah.edu/publications/lins08/ssdbm08.pdf",
}

@Article{SCI:Lin2008b,
  author =    "W. Lin and Q. Zhu and W. Gao and Y. Chen and C.-H.
              Toh and M. Styner and G. Gerig and J.K. Smith and
              B. Biswal and J. Gilmore",
  title =     "Functional Connectivity Magnetic Resonance Imaging
              Reveals Cortical Functional Connectivity in the
              Developing Brain",
  journal =   "American Journal of Neuroradiology",
  volume =    "29",
  pages =     "1883--1889",
  year =      "2008",
  month =     "Fall",
  keywords =  "ucnia",
  url =       "http://www.sci.utah.edu/publications/lin08/Functional_Connectivity_MRI.pdf",
}

@TechReport{SCI:Lin2011a,
  author =    "L. Lins and D. Koop and J. Freire and C.T.
              Silva",
  title =     "DEFOG: A System for Data-Backed Visual
              Composition",
  number =    "UUSCI-2011-003",
  year =      "2011",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2011-003.pdf",
}

@InProceedings{SCI:Liu2009a,
  author =    "Z. Liu and H. Zhu and B.L. Marks and L.M. Katz and
              C.B. Goodlett and G. Gerig and M. Styner",
  title =     "Voxel-wise group analysis of DTI",
  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging: From Nano to Macro, 2009",
  pages =     "807--810",
  year =      "2009",
  doi =       "10.1109/ISBI.2009.5193172",
  url =       "http://www.sci.utah.edu/publications/liu09/Liu_ISBI2009.pdf",
}

@Article{SCI:Liu2010a,
  author =    "W. Liu and P. Zhu and J.S. Anderson and D.
              Yurgelun-Todd and P.T. Fletcher",
  title =     "Spatial Regularization of Functional Connectivity
              Using High-Dimensional Markov Random Fields",
  journal =   "Medical Image Computing and Computer-Assisted
              Intervention (MICCAI 2010)",
  volume =    "14",
  pages =     "363--370",
  year =      "2010",
  pmid =      "20879336",
  url =       "http://www.sci.utah.edu/publications/liu10/MRF_connectivity_miccai2010.pdf",
}

@Article{SCI:Liu2010b,
  author =    "Z. Liu and C. Goodlett and G. Gerig and M.
              Styner",
  title =     "Evaluation of DTI Property Maps as Basis of DTI
              Atlas Building",
  journal =   "SPIE Medical Imaging",
  volume =    "7623, 762325",
  year =      "2010",
  month =     "February",
  doi =       "10.1117/12.844911",
}

@Article{SCI:Liu2010c,
  author =    "Z. Liu and Y. Wang and G. Gerig and S. Gouttard
              and R. Tao and T. Fletcher and M.A. Styner",
  title =     "Quality control of diffusion weighted images",
  journal =   "SPIE Medical Imaging",
  volume =    "7628, 76280J",
  year =      "2010",
  month =     "February",
  doi =       "10.1117/12.844748",
}

@Article{SCI:Liu2011a,
  author =    "W. Liu and S. Awate and J. Anderson and D.
              Yurgelun-Todd and P.T. Fletcher",
  title =     "Monte Carlo expectation maximization with hidden
              Markov models to detect functional networks in
              resting-state fMRI",
  journal =   "Machine Learning in Medical Imaging",
  volume =    "7009/2011",
  pages =     "59--66",
  year =      "2011",
  series =    "Lecture Notes in Computer Science (LNCS)",
  doi =       "10.1007/978-3-642-24319-6_8",
  url =       "http://www.sci.utah.edu/publications/liu11/Liu_MLMI2011.pdf",
}

@InCollection{SCI:Liv2000,
  author =    "Y. Livnat and S.G. Parker and C.R. Johnson",
  title =     "Fast Isosurface Extraction Methods for Large Image
              Data Sets",
  booktitle = "Handbook of Medical Imaging",
  pages =     "731--745",
  year =      "2000",
  editor =    "A.N. Bankman",
  publisher = "Academic Press",
  address =   "San Diego, CA",
  month =     "Nov",
  keywords =  "scalar field methods, isosurface extraction,
              remote visualization, remote isosurface
              visualization, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/hmip_00/paper_final.ps",
  url =       "http://www.sci.utah.edu/publications/hmip_00/paper_final.ps.gz",
  url =       "http://www.sci.utah.edu/publications/hmip_00/paper_final.pdf",
}

@InProceedings{SCI:Liv2001,
  author =    "Y. Livnat and C.D. Hansen and S.G. Parker and C.R.
              Johnson",
  title =     "Isosurface extraction for large-scale datasets",
  booktitle = "Proceedings of Scientific Visualization
              -Dagstuhl`2000",
  year =      "2001",
  editor =    "F. Post",
  keywords =  "scalar field methods, isosurface extraction,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/yarden01/dagstuhl00.pdf",
}

@TechReport{SCI:Liv2002b,
  author =    "Y. Livnat and X. Cavin and C.D. Hansen",
  title =     "{PHASE}: Progressive Hardware Assisted IsoSurface
              Extraction Framework",
  number =    "UUSCI-2002-001",
  year =      "2002",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "isosurface extraction, scalar field methods",
  url =       "http://www.sci.utah.edu/publications/yarden02/UUSCI-2002-001.pdf",
}

@TechReport{SCI:Liv2003a,
  author =    "Y. Livnat and C.D. Hansen",
  title =     "Dynamic View Dependent Isosurface Extraction",
  number =    "UUSCI-2003-004",
  year =      "2003",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scalar field methods, isosurface extraction",
  url =       "http://www.sci.utah.edu/publications/yarden03/UUSCI-2003-004.pdf",
}

@InProceedings{SCI:Liv2004a,
  author =    "Y. Livnat and X. Tricoche",
  title =     "Interactive Point Based Isosurface Extraction",
  booktitle = c-VIS2004,
  pages =     "457--464",
  year =      "2004",
  keywords =  "scalar field methods, isosurface extraction,
              parallel visualization, visible human, point based
              methods, hybrid surface representation, ncrr",
  url =       "http://www.sci.utah.edu/publications/yarden04/pisa.pdf",
}

@InCollection{SCI:Liv2005a,
  author =    "Y. Livnat",
  title =     "Accelerated Isosurface Extraction Approaches",
  booktitle = "The Visualization Handbook",
  pages =     "39--55",
  year =      "2005",
  editor =    "C.D. Hansen and C.R. Johnson",
  publisher = "Elsevier",
  isbn =      "0-12-387582-X",
  keywords =  "scalar field methods, isosurface extraction",
  url =       "http://www.sci.utah.edu/publications/yarden05/ch02_livnat.pdf",
}

@InProceedings{SCI:Liv2005b,
  author =    "Y. Livnat and J. Agutter and S. Moon and R.F.
              Erbacher and S. Foresti",
  title =     "A Visualization Paradigm for Network Intrusion
              Detection",
  booktitle = "IEEE Workshop on Information Assurance and
              Security 2005",
  pages =     "30--37",
  year =      "2005",
  month =     "June",
  keywords =  ", network security visualization, interfaces,
              intrusion detection, visalert",
  url =       "http://www.sci.utah.edu/publications/yarden05/VisAlert.pdf",
}

@InProceedings{SCI:Liv2005c,
  author =    "Y. Livnat and J. Agutter and S. Moon and S.
              Foresti",
  title =     "Visual Correlation for Situational Awareness",
  booktitle = c-IVIS2005,
  pages =     "13",
  year =      "2005",
  month =     "October",
  keywords =  "network security visualization, interfaces,
              intrusion detection, visalert, visaware,",
  url =       "http://www.sci.utah.edu/publications/yarden05/VisAware.pdf",
}

@TechReport{SCI:Liv2005d,
  author =    "Y. Livnat and X. Tricoche",
  title =     "Shadows for Incomplete Point-based Isosurfaces",
  number =    "UUSCI-2005-001",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "isosurface extraction, remote visualization,
              remote isosurface visualization",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-001.pdf",
}

@TechReport{SCI:Liv2006a,
  author =    "O.E. Livne",
  title =     "Clustering on Single Refinement Level:
              Berger-Rigoustos Algorithm",
  number =    "UUSCI-2006-001",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-001.pdf",
}

@TechReport{SCI:Liv2006b,
  author =    "O.E. Livne",
  title =     "Minimum and Maximum Patch Size Clustering on a
              Single Refinement Level",
  number =    "UUSCI-2006-002",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-002.pdf",
}

@TechReport{SCI:Liv2006c,
  author =    "O.E. Livne",
  title =     "Efficient Update of Persistent Patches in the
              Berger Rigoutsous Algorithm",
  number =    "UUSCI-2006-003",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-003.pdf",
}

@TechReport{SCI:Liv2006d,
  author =    "O.E. Livne",
  title =     "Clustering Patches for Multi-Level Refined Grids:
              a Hierarchical Approach",
  number =    "UUSCI-2006-004",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-004.pdf",
}

@TechReport{SCI:Liv2006e,
  author =    "O.E. Livne",
  title =     "ShockTube Problem - Status Report 1 Uni-Level
              Experiments",
  number =    "UUSCI-2006-005",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-005.pdf",
}

@TechReport{SCI:Liv2006f,
  author =    "O.E. Livne",
  title =     "ICE Algorithm and the Davis Advection Scheme",
  number =    "UUSCI-2006-006",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-006.pdf",
}

@TechReport{SCI:Liv2006g,
  author =    "O.E. Livne",
  title =     "ICE Algorithm for the Shocktube Problem",
  number =    "UUSCI-2006-007",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-007.pdf",
}

@InCollection{SCI:Liv2007a,
  author =    "Y. Livnat and S.G. Parker and C.R. Johnson",
  title =     "Fast Isosurface Extraction Methods for Large Image
              Data Sets",
  booktitle = "Handbook of Medical Imaging: Processing and
              Analysis",
  year =      "2007",
  editor =    "Isaac Bankman",
  chapter =   "44",
  publisher = "Academic Press",
  edition =   "2nd Edition",
  keywords =  "isosurface extraction, large dataset
              visualization",
  url =       "http://www.sci.utah.edu/publications/livnat07/Livnat_Handbook_MI_Ch44.pdf",
}

@InCollection{SCI:Liv2008a,
  author =    "Y. Livnat and S.G. Parker and C.R. Johnson",
  title =     "Fast Isosurface Extraction Methods for Large Image
              Data Sets",
  booktitle = "Handbook of Medical Image Processing and
              Analysis",
  pages =     "801--816",
  year =      "2008",
  editor =    "Isaac N. Bankman",
  chapter =   "47",
  publisher = "Elsevier",
  edition =   "2nd edition",
  note =      "(to appear)",
  url =       "http://www.sci.utah.edu/publications/livnat08/Large-scale-isosurface08.pdf",
}

@InProceedings{SCI:Liv2010a,
  author =    "Y. Livnat and P. Gesteland and J. Benuzillo and W.
              Pettey and D. Bolton and F. Drews and H. Kramer and
              M. Samare",
  title =     "A Novel Workbench for Epidemic investigation and
              Analysis of Search Strategies in public health
              practice",
  booktitle = "Proceedings of AMIA 2010 Annual Symposium",
  pages =     "647--651",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/livnat10/Epinome_AMIA_2010.pdf",
}

@Article{SCI:Liv96,
  author =    "Y. Livnat and H.W. Shen and C.R. Johnson",
  title =     "A Near Optimal Isosurface Extraction Algorithm
              Using the Span Space",
  journal =   "{IEEE} Transactions on Visual Computer Graphics",
  volume =    "2",
  number =    "1",
  pages =     "73--84",
  year =      "1996",
  keywords =  "scalar field methods, isosurface extraction,
              scientific visualization",
  url =       "http://www.sci.utah.edu/publications/yarden96/tvcg96.pdf",
}

@InProceedings{SCI:Liv98,
  author =    "Y. Livnat and C.D. Hansen",
  title =     "View Dependent Isosurface Extraction",
  booktitle = "{IEEE} Visualization '98",
  pages =     "175--180",
  year =      "1998",
  month =     "Oct",
  keywords =  "scalar field methods, isosurface extraction,
              remote isosurface visualization",
  url =       "http://www.sci.utah.edu/publications/yarden98/wise.pdf",
}

@TechReport{SCI:Liv99a,
  author =    "Y. Livnat",
  title =     "{NOISE}, {WISE} and {SAGE}: Algorithms for Rapid
              Isosurface Extraction",
  number =    "UUSCI-1999-001",
  year =      "1999",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  month =     "December",
  keywords =  "scalar field methods, isosurface extraction",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-1999-001.pdf",
}

@InProceedings{SCI:Liz2008a,
  author =    "M. Lizier and J.F. Shepherd and L.G. Nonato and J.
              Comba and C.T. Silva",
  title =     "Comparing Techniques for Tetrahedral Mesh
              Generation",
  booktitle = "Proceedings of the Inaugural International
              Conference of the Engineering Mechanics Institute
              ({EM} 2008)",
  pages =     "(accepted)",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/lizier08/meshing-comp.pdf",
}

@InProceedings{SCI:Liz2010a,
  author =    "M.A.S. Lizier and M.F. Siqueira and J.D. Daniels
              II and C.T. Silva and L.G. Nonato",
  title =     "Template-based Remeshing for Image
              Decomposition",
  booktitle = "Proceedings of the 23rd SIBGRAPI Conference on
              Graphics, Patterns and Images",
  pages =     "95--102",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/lizier10/Lizier_SIBGRAPI2010.pdf",
}

@Article{SCI:Lom1999a,
  author =    "I. Lomtev and R.M. Kirby and G.E. Karniadakis",
  title =     "A Discontinuous Galerkin ALE Method for
              Compressible Viscous Flows in Moving Domains",
  journal =   "Journal of Computational Physics",
  volume =    "155",
  pages =     "128--159",
  year =      "1999",
}

@InProceedings{SCI:Lor2001a,
  author =    "P. Lorenzen and S. Joshi and G. Gerig and E.
              Bullitt",
  title =     "Tumor-Induced Structural Radiometric Asymmetry in
              Brain Images",
  booktitle = "Workshop on Mathematical Methods in Biomedical
              Image Analysis (MMBIA)",
  pages =     "163--170",
  year =      "2001",
  month =     "2001",
  url =       "http://www.sci.utah.edu/publications/lorenzen01/MMBIA01-Lorenzen-brain.pdf",
}

@InProceedings{SCI:Lor2003a,
  author =    "P. Lorenzen and S. Joshi",
  title =     "High-Dimensional Multi-modal Image Registration",
  booktitle = "Proceedings of the Workshop on Biomedical Image
              Registration",
  pages =     "234--243",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/lorenzen03/WBIR03_Lorenzen.pdf",
}

@InProceedings{SCI:Lor2004a,
  author =    "P. Lorenzen and B. Davis and S. Joshi",
  title =     "Model Based Symmetric Information Theoretic Large
              Deformation Multi-Modal Image Registration",
  booktitle = "Proceedings of the International Symposium on
              Biomedical Imaging (ISBI)",
  pages =     "720--723",
  year =      "2004",
  month =     "April",
  location =  "Piscataway, NJ",
  url =       "http://www.sci.utah.edu/publications/lorenzen04/ISBI04-Lorenzen-MultiModal.pdf",
}

@InProceedings{SCI:Lor2005a,
  author =    "P. Lorenzen and B. Davis and S. Joshi",
  title =     "Unbiased Atlas Formation via Large Deformations
              Metric Mapping",
  booktitle = "Med Image Comput Comput Assist Interv Int Conf Med
              Image Comput Comput Assist Interv (MICCAI)",
  volume =    "8 (Pt. 2)",
  pages =     "411--418",
  year =      "2005",
  editor =    "J.S. Duncan and G. Gerig",
  url =       "http://www.sci.utah.edu/publications/lorenzen05/MICCAI05_Lorenzen.pdf",
}

@InProceedings{SCI:Lor2006a,
  author =    "L. Lorenzo and R.S. MacLeod and R.T. Whitaker and
              G. Adluru and E.V.R. DiBella",
  title =     "Level Sets and Shape Models for Segmentation of
              Cardiac Perfusion MRI",
  booktitle = c-SPIEMI2006,
  volume =    "6144",
  pages =     "1320--1331",
  year =      "2006",
  keywords =  "ip image processing signal processing,
              segmentation, cardiac heart, ncrr, ip gp image
              processing goemetry processing",
  url =       "http://www.sci.utah.edu/publications/adluru06/SPIE_06.pdf",
}

@Article{SCI:Lor2006b,
  author =    "P. Lorenzen and M. Prastawa and B. Davis and G.
              Gerig and E. Bullitt and S. Joshi",
  title =     "Multi-Modal Image Set Registration and Atlas
              Formation",
  journal =   "Med Image Anal",
  volume =    "10",
  number =    "3",
  pages =     "440--451",
  year =      "2006",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/lorenzen06/Lorenzen-MedIA-2006.pdf",
}

@InProceedings{SCI:Lu2002a,
  author =    "A. Lu and J. Taylor and M. Hartner and D. Ebert
              and C.D. Hansen",
  title =     "Hardware-Accelerated Interactive Illustrative
              Stipple Drawing of Polygonal Objects",
  booktitle = c-VMV2002,
  pages =     "61--68",
  year =      "2002",
  month =     "November",
  location =  "Erlangen, Germany",
  url =       "http://www.sci.utah.edu/publications/lu02/stipple_VMV_2002.pdf",
}

@InProceedings{SCI:Lu2002b,
  author =    "A. Lu and C.J. Morris and D. Ebert and P.
              Rheingans and C.D. Hansen",
  title =     "Non-Photorealistic Volume Rendering Using
              Stippling Techniques",
  booktitle = c-VIS2002,
  pages =     "211--218",
  year =      "2002",
  location =  "Boston, MA",
  note =      "Awarded Best Paper at the conference",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/lu02/vis_stipple.pdf",
}

@Article{SCI:Lu2003a,
  author =    "A. Lu and C.J. Morris and J. Taylor and D.S. Ebert
              and C.D. Hansen and P. Rheingans and M. Hartner",
  title =     "Illustrative Interactive Stipple Rendering",
  journal =   "{IEEE} Transactions on Visualization and Computer
              Graphics",
  volume =    "9",
  number =    "2",
  pages =     "127--138",
  year =      "2003",
  month =     "April",
  keywords =  "scalar field methods, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/lu03/Lu_TVCG2003.pdf",
}

@Article{SCI:Lu2003b,
  author =    "C. Lu and S. Pizer and S. Joshi",
  title =     "A Markov Random Field Approach to Multi-scale
              Shape Analysis",
  journal =   "Scale Space Methods in Computer Vision",
  pages =     "416--431",
  year =      "2003",
  editor =    "LD Griffin and M Lillholm",
  url =       "http://www.sci.utah.edu/publications/lu03/ScaleSpace03_Lu_shape.pdf",
}

@Article{SCI:Lu2005a,
  author =    "H. Lu and M. Berzins and C.E. Goodyer and P.K.
              Jimack",
  title =     "High Order Discontinuous Galerkin Method for EHL
              Line Contact Problems",
  journal =   "Communication in Numerical Methods in
              Engineering",
  volume =    "21",
  number =    "11",
  pages =     "643--650",
  year =      "2005",
  keywords =  "computational mechanics, EHL",
  url =       "http://www.sci.utah.edu/publications/lu05/LBGJ05.pdf",
}

@InProceedings{SCI:Lu2006a,
  author =    "H. Lu and M. Berzins and C.E. Goodyer and P.K.
              Jimack and M. Walkley",
  title =     "Adaptive High-order Finite Element Solution of
              Transient Elastohydrodynamic Lubrication
              Problems",
  booktitle = "Proc. IMechE Part J: J. Engrg. Tribology",
  volume =    "220",
  pages =     "215--225",
  year =      "2006",
  keywords =  "high-order DG, adaptivity, EHL, line contact,
              transient",
  url =       "http://www.sci.utah.edu/publications/lu06/LBGJW06.pdf",
}

@Article{SCI:Lu2006b,
  author =    "H. Lu and M. Berzins and P.K. Jimack",
  title =     "Application of the Adaptive Discontinuous Galerkin
              Method to Problems in Elastohydrodynamic
              Lubrication",
  journal =   "Innovation in Engineering Computational
              Technology",
  pages =     "169--191",
  year =      "2006",
  editor =    "B.H.V. Topping, G. Montero and R. Montenegro",
  publisher = "Saxe-Coburg Publications, Stirling",
  keywords =  "computational mechanics, EHL",
  url =       "http://www.sci.utah.edu/publications/lu06/LBJ06.pdf",
}

@Article{SCI:Lu2012a,
  author =    "H. Lu and M. Berzins and C.E. Goodyer and P.K.
              Jimack",
  title =     "Adaptive High-Order Discontinuous Galerkin
              Solution of Elastohydrodynamic Lubrication Point
              Contact Problems",
  journal =   "Advances in Engineering Software",
  pages =     "(published online)",
  year =      "2012",
  keywords =  "Elastohydrodynamic lubrication, Discontinuous
              Galerkin, High polynomial degree, h-adaptivity,
              Nonlinear systems",
  url =       "http://www.sci.utah.edu/publications/lu12/Lu_LBGJ2012.pdf",
}

@Article{SCI:Lui2007a,
  author =    "J. Luitjens and M. Berzins and T.C. Henderson",
  title =     "Parallel Space Filling Curve Generation Through
              Sorting",
  journal =   "Journal of Concurrency and Computation",
  volume =    "19",
  number =    "10",
  pages =     "1387--1402",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/luitjens07/Concurrency2007JL.pdf",
}

@InCollection{SCI:Lui2007b,
  author =    "J. Luitjens and B. Worthen and M. Berzins and T.C.
              Henderson",
  title =     "Scalable Parallel AMR for the Uintah Multiphysics
              Code",
  booktitle = "Petascale Computing Algorithms and Applications",
  year =      "2007",
  editor =    "D. Bader",
  publisher = "Chapman and Hall/CRC",
  keywords =  "uintah",
  url =       "http://www.sci.utah.edu/publications/luitjens07/2008_Luitjens_UintahMultiphysicsCode.pdf",
}

@TechReport{SCI:Lui2008a,
  author =    "J. Luitjens and Q. Meng and M. Berzins and T.
              Henderson",
  title =     "Improving the Load Balance of Parallel Adaptive
              Mesh Refined Simulations",
  number =    "UUSCI-2008-007",
  year =      "2008",
  institution = "University of Utah School of Computing",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2008-007.pdf",
}

@TechReport{SCI:Lui2009a,
  author =    "J. Luitjens and M. Berzins",
  title =     "Uintah: A Scalable Adaptive Framework for Emerging
              Petascale Platforms",
  number =    "UUSCI-2009-002",
  year =      "2009",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2009-002.pdf",
}

@InProceedings{SCI:Lui2010a,
  author =    "J. Luitjens and M. Berzins",
  title =     "Improving the Performance of Uintah: A Large-Scale
              Adaptive Meshing Computational Framework",
  booktitle = "Proceedings of the 24th IEEE International
              Parallel and Distributed Processing Symposium
              (IPDPS10)",
  pages =     "(accepted)",
  year =      "2010",
  location =  "Atlanta, GA",
  keywords =  "csafe, c-safe, scirun, uintah, fires, explosions,
              simulation",
  url =       "http://www.sci.utah.edu/publications/luitjens10/Luitjens_ipdps2010.pdf",
}

@InBook{SCI:Lui2010b,
  author =    "J. Luitjens and J. Guilkey and T. Harman and B.
              Worthen and S.G. Parker",
  title =     "Adaptive Computations in the Uintah Framework",
  booktitle = "Advanced Computational Infastructures for
              Parallel/Distributed Adapative Applications",
  year =      "2010",
  chapter =   "1",
  publisher = "Wiley Press",
  url =       "http://www.sci.utah.edu/publications/luitjens10/Luitjens_Uintah2010a.pdf",
}

@Article{SCI:Lui2011a,
  author =    "J. Luitjens and M. Berzins",
  title =     "Scalable parallel regridding algorithms for
              block-structured adaptive mesh renement",
  journal =   "Concurrency And Computation: Practice And
              Experience",
  volume =    "23",
  number =    "13",
  pages =     "1522--1537",
  year =      "2011",
  publisher = "John Wiley & Sons, Ltd.",
  issn =      "1532--0634",
  doi =       "10.1002/cpe.1719",
  keywords =  "adaptive mesh refinement, regridding, remeshing,
              scalability",
  url =       "http://www.sci.utah.edu/publications/luitjens11/Luitjens-Berzins_CCPE2011.pdf",
}

@InProceedings{SCI:Luj2004a,
  author =    "T.J. Lujan and M.S. Dalton and S.P. Lake and B.J.
              Ellis and T.D. Rosenberg and J.A. Weiss",
  title =     "{ACL} Injury Alters {MCL} Strain During
              Anterior-Posterior but not Varus-Valgus Loading",
  booktitle = c-ORS2004,
  volume =    "29",
  pages =     "1272",
  year =      "2004",
  month =     "March",
  location =  "San Francisco, CA",
}

@Article{SCI:Luj2005a,
  author =    "T.J. Lujan and S.P. Lake and T.A. Plaizier and
              B.J. Ellis and J.A. Weiss",
  title =     "Simultaneous Measurement of Three-Dimensional
              Joint Kinematics and Tissue Strains with Optical
              Methods",
  journal =   "ASME Journal of Biomechanical Engineering",
  volume =    "127",
  pages =     "193--197",
  year =      "2005",
  keywords =  "computational biomechanics, computational
              mechanics",
  url =       "http://www.sci.utah.edu/publications/lujan05/lujan_jbme_2005.pdf",
}

@Article{SCI:Luj2006a,
  author =    "T.J. Lujan and M.S. Dalton and B.M. Thompson B.J.
              Ellis and J.A. Weiss",
  title =     "Effect of ACL Deficiency on MCL Strains and Joint
              Kinematics",
  journal =   "Journal of Biomechanical Engineering",
  pages =     "(in press)",
  year =      "2006",
  month =     "November",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/lujan06/lujan_jbme_2007.pdf",
}

@Article{SCI:Luj2006b,
  author =    "T.J. Lujan and C.J. Underwood and H.B. Henninger
              and B.M. Thompson and J.A. Weiss",
  title =     "Effect of Dermatan Sulfate Glycosaminoglycans on
              the Quasi-Static Material Properties of the Human
              Medial Collateral Ligament",
  journal =   "Journal of Orthopaedic Research",
  pages =     "(in press)",
  year =      "2006",
  month =     "October",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/lujan06/lujan_JOR_2007.pdf",
}

@Article{SCI:Luj2007a,
  author =    "T.J. Lujan and M.S. Dalton and B.M. Thompson and
              B.J. Ellis and J.A. Weiss",
  title =     "Effect of ACL Deficiency on MCL Strains and Joint
              Kinematics",
  journal =   "Journal of Biomechanical Engineering",
  volume =    "129",
  number =    "3",
  pages =     "386--392",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/lujan07/lujan_jbme_2007.pdf",
}

@Article{SCI:Luj2007b,
  author =    "T.J. Lujan and C.J. Underwood and H.B. Henninger
              and B.M. Thompson and J.A. Weiss",
  title =     "Effect of Dermatan Sulfate Glycosaminoglycans on
              the Quasi-Static Material Properties of the Human
              Medial Collateral Ligament",
  journal =   "Journal of Orthopaedic Research",
  volume =    "25",
  number =    "7",
  pages =     "894--903",
  year =      "2007",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/lujan07/lujan_JOR_2007.pdf",
}

@Article{SCI:Luj2008a,
  author =    "T.J. Lujan and C.J. Underwood and N.T. Jacobs and
              J.A. Weiss",
  title =     "Contribution of Glycosaminoglycans to Viscoelastic
              Tensile Behavior of Human Ligament",
  journal =   "Journal of Applied Physiology",
  volume =    "106",
  number =    "2",
  pages =     "423--431",
  year =      "2008",
  keywords =  "mrl",
  url =       "http://www.sci.utah.edu/publications/lujan08/lujan_jap_2009.pdf",
}

@InProceedings{SCI:Luk2002a,
  author =    "E. Luke and C.D. Hansen",
  title =     "Semotus Visum: A Flexible Remote Visualization
              Framework",
  booktitle = c-VIS2002,
  pages =     "61--68",
  year =      "2002",
  location =  "Boston, MA",
  url =       "http://www.sci.utah.edu/publications/luke02/Vis02-luke-hansen-2002.pdf",
}

@Article{SCI:Ma2001,
  author =    "K. Ma and S.G. Parker",
  title =     "Massively Parallel Software Rendering for
              Visualizing Large-Scale DataSets",
  journal =   j-TVCG,
  pages =     "72--83",
  year =      "2001",
  month =     "July/August",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt, scientific
              visualization",
  url =       "http://www.sci.utah.edu/publications/ma01/ma2001.pdf",
}

@InProceedings{SCI:Ma93a,
  author =    "K.L. Ma and J. Painter and C.D. Hansen and M.
              Krogh",
  title =     "A Data Distributed, Parallel Algorithm for
              Ray-Traced Volume Rendering",
  booktitle = "Proceedings of the Parallel Rendering Symposium
              1993",
  pages =     "15--22",
  year =      "1993",
  month =     "October",
  location =  "San Jose, Ca.",
  keywords =  "scalar field methods, volume rendering, parallel
              visualization",
}

@TechReport{SCI:Ma93b,
  author =    "K.L. Ma and J.S. Painter and C.D. Hansen and M.F.
              Krogh",
  title =     "A Data Distributed Parallel Algorithm for
              Ray-Traced Volume Rendering",
  pages =     "15--22",
  year =      "1993",
  institution = "Institute for Computer Applications in Science
              and Engineering, {NASA} Langley Research Center",
  type =      "{ICASE} Report",
  month =     "August",
  location =  "Hampton, VA",
  keywords =  "volume rendering, parallel visualization,
              interactive rt distributed interactive ray tracing
              dirt",
}

@Article{SCI:Ma94a,
  author =    "K.L. Ma and J. Painter and C.D. Hansen and M.
              Krogh",
  title =     "Parallel Volume Rendering Using Binary-Swap
              Compositing",
  journal =   "{IEEE} Computer Graphics and Applications",
  volume =    "14",
  number =    "4",
  pages =     "59--68",
  year =      "1994",
}

@TechReport{SCI:Maa2009a,
  author =    "S.A. Maas and B.J. Ellis and D.S. Rawlins and J.A.
              Weiss",
  title =     "A Comparison of FEBio, ABAQUS, and NIKE3D Results
              for a Suite of Verification Problems",
  number =    "UUSCI-2009-009",
  year =      "2009",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  keywords =  "mrl, MRL, FEBio, ABAQUS, NIKE3D",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2009-009.pdf",
}

@TechReport{SCI:Maa2011a,
  author =    "S.A. Maas and B.J. Ellis and D.S. Rawlins and L.T.
              Edgar and C.R. Henak and J.A. Weiss",
  title =     "Implementation and Verification of a
              Nodally-Integrated Tetrahedral Element in FEBio",
  number =    "UUSCI-2011-007",
  year =      "2011",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  keywords =  "MRL",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2011-007.pdf",
}

@Article{SCI:Mac2001a,
  author =    "R.S. MacLeod and B. Yilmaz and B. Taccardi and 
              B.B. Punske and Y. Serina and D.H. Brooks",
  title =     "Direct and Inverse Methods for Cardiac Mapping
              Using Multielectrode Catheter Measurements",
  journal =   "Journal of Biomedizinische Technik",
  volume =    "46(supp)",
  pages =     "207--209",
  year =      "2001",
  keywords =  "ncrr, map3d, cardiac heart, scientific
              visualization, forward problems inverse problems
              forward simulation inverse solutions finite
              elements",
}

@Article{SCI:Mac2001b,
  author =    "R.S. MacLeod and B.B. Punske and B. Yilmaz and S.
              Shome and B. Taccardi",
  title =     "The Role of Heart Rate in Myocardial Ischemia From
              Restricted Coronary Perfusion",
  journal =   j-JE,
  volume =    "34 (supp)",
  pages =     "43--51",
  year =      "2001",
  note =      "ISCE conference paper",
  keywords =  "ncrr, map3d, cardiac heart, scientific
              visualization",
  url =       "http://www.sci.utah.edu/publications/macleod_isce01/isce01.pdf",
}

@Article{SCI:Mac2002a,
  author =    "R.S. MacLeod and Q. Ni and B. Taccardi",
  title =     "Modeling Cardiac Bioelectricity in Realistic
              Volumes: How Real is Real?",
  journal =   "Einthoven 2002",
  pages =     "45-56",
  year =      "2002",
  editor =    "M.J. Schalij, M.J. Janse, A. van Oosterom, H.J.J.
              Wellens, E.E. van der Wall",
  institution = "The Einthoven Foundation",
  location =  "Leiden",
  keywords =  "NCRR, forward problems inverse problems forward
              simulation inverse solutions finite elements,
              biopse, cardiac heart, ncrr, scientific
              computing",
  url =       "http://www.sci.utah.edu/publications/macleod02/MacLeod-EInthoven2002.pdf",
}

@InProceedings{SCI:Mac2002b,
  author =    "R.S. MacLeod and E.D. DiBella and B.B. Punske and
              E.K. Jeong",
  title =     "Multimodal Imaging of Cardiac Activation,
              Perfusion, and Ischemia",
  booktitle = "14th Annual Research Symposium of the Medical
              Imaging Research Laboratory",
  year =      "2002",
  keywords =  "NCRR, forward problems inverse problems forward
              simulation inverse solutions finite elements,
              forward simulation, map3d, biopse, cardiac heart,
              ncrr, scientific computing",
}

@InProceedings{SCI:Mac2004a,
  author =    "R.S. Macleod and D.M. Weinstein and J.D. de St.
              Germain and D.H. Brooks and C.R. Johnson and S.G.
              Parker",
  title =     "SCIRun/BioPSE: Integrated Problem Solving
              Environment for Bioelectric Field Problems and
              Visualization",
  booktitle = "Proceedings of the Int. Symp. on Biomed. Imag.",
  pages =     "640--643",
  year =      "2004",
  month =     "April",
  location =  "Arlington, Va",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions, scirun, biopse",
  url =       "http://www.sci.utah.edu/publications/macleod04/paper-utah.pdf",
}

@Article{SCI:Mac2005a,
  author =    "R.S. MacLeod and B. Yilmaz and B.B. Punske and B.
              Taccardi and D.H. Brooks",
  title =     "Epicardial Activation Mapping from Multielectrode
              Venous Catheters",
  journal =   j-JE,
  pages =     "(in press)",
  year =      "2005",
  keywords =  "cardiac heart, ncrr",
}

@Article{SCI:Mac2005b,
  author =    "R.S. MacLeod and S. Shome and J.G. Stinstra and
              B.P. Punske and B. Hopenfeld",
  title =     "Mechanisms of Ischemia-Induced ST-Segment
              Changes",
  journal =   j-JE,
  volume =    "38(4 Suppl)",
  pages =     "8--13",
  year =      "2005",
  month =     "November",
  keywords =  "ncrr",
}

@InProceedings{SCI:Mac2005c,
  author =    "R.S. MacLeod",
  title =     "Ischemia-Induced ST Changes and Arrhythmic Risk",
  booktitle = "International Congress on Electrocardiology",
  pages =     "(accepted)",
  year =      "2005",
  keywords =  "cardiac heart, ncrr",
}

@Misc{SCI:Mac2005d,
  author =    "R.S. MacLeod and D.H. Brooks",
  title =     "Quantitative Electrocardiography: Two Steps
              Forward and One Step Back",
  year =      "2005",
  howpublished = "Presented at The Joint Meeting of The 5th
              International Conference on Bioelectromagnetism and
              The 5th International Symposium on Noninvasive
              Functional Source Imaging within the Human Brain
              and Heart",
  keywords =  "cardiac heart, ncrr",
}

@Article{SCI:Mac2005e,
  author =    "R.S. MacLeod and F. Kornreich and A. van Oosterom
              and P. Rautaharju and R. Selvester and G. Wagner
              and C. Zywietz",
  title =     "Report of the First Virtual Visualization of the
              Reconstructed Electrocardiographic Display
              Symposium",
  journal =   "Journal of Electrocardiology",
  volume =    "38",
  pages =     "385--399",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/macleod05/FredSymposium-final.pdf",
}

@Article{SCI:Mac2009a,
  author =    "R.S. MacLeod and J.G. Stinstra and S. Lew and R.T.
              Whitaker and D.J. Swenson and M.J. Cole and J.
              Krueger and D.H. Brooks and C.R. Johnson",
  title =     "Subject-specific, multiscale simulation of
              electrophysiology: a software pipeline for
              image-based models and application examples",
  journal =   "Philosophical Transactions of The Royal Society A,
              Mathematical, Physical & Engineering Sciences",
  volume =    "367",
  number =    "1896",
  pages =     "2293--2310",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/macleod09/MacLeod_TRSA2009.pdf",
}

@InProceedings{SCI:Mac91a,
  author =    "R.S. MacLeod and C.R. Johnson and P.R. Ershler",
  title =     "Construction of an Inhomogeneous Model of the
              Human Torso for Use in Computational
              Electrocardiography",
  booktitle = "{IEEE} Engineering in Medicine and Biology Society
              13th Annual International Conference",
  pages =     "688--689",
  year =      "1991",
  publisher = "{IEEE} Press",
}

@InProceedings{SCI:Mac92c,
  author =    "R.S. MacLeod and C.R. Johnson and M.A. Matheson",
  title =     "Visualization Tools for Computational
              Electrocardiology",
  booktitle = "Visualization in Biomedical Computing",
  pages =     "433--444",
  year =      "1992",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart, pse, problem solving environments",

  url =       "http://www.sci.utah.edu/publications/macleod92/MacLeod_VBC1992.pdf",
}

@InProceedings{SCI:Mac92d,
  author =    "R.S. MacLeod and C.R. Johnson and M.A. Matheson",
  title =     "Visualization of cardiac bioelectricity --- a case
              study",
  booktitle = "{IEEE} Visualization `92",
  pages =     "411--418",
  year =      "1992",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scalar field methods, vector field methods, cardiac
              heart",
}

@InProceedings{SCI:Mac92e,
  author =    "R.S. MacLeod and C.R. Johnson and M.J. Gardner
              B.M.",
  title =     "Localization of Ischemia during Coronary
              Angioplasty using Body Surface Potential Mapping
              and an Electrocardiographic Inverse Solution",
  booktitle = "Computers in Cardiology",
  pages =     "251--254",
  year =      "1992",
  publisher = "{IEEE} Press",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart",
}

@Article{SCI:Mac93,
  author =    "R.S. MacLeod and C.R. Johnson and M.A. Matheson",
  title =     "Visualization of Bioelectric Fields",
  journal =   "{IEEE} Computer Graphics and Applications",
  volume =    "14",
  pages =     "10--12",
  year =      "1993",
  month =     "Jul",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              scalar field methods, vector field methods",
}

@InProceedings{SCI:Mac93b,
  author =    "R.S. MacLeod and C.R. Johnson",
  title =     "Map3d: Interactive Scientific Visualization for
              Bioengineering Data",
  booktitle = "Proceedings of the {IEEE} Engineering in Medicine
              and Biology Society 15th Annual International
              Conference",
  pages =     "30--31",
  year =      "1993",
  publisher = "{IEEE} Press",
  keywords =  "map3d, neuro brain, cardiac heart, scientific
              visualization",
  url =       "http://www.sci.utah.edu/publications/macleod93/embs93.pdf",
}

@TechReport{SCI:Mac94d,
  author =    "R.S. MacLeod and P.R. Ershler and C.R. Johnson
              M.A.",
  title =     "Map3d: Scientific Visualization Program for
              Multichannel Time Series Data on Unstructured,
              Three-Dimensional Meshes. Program User's Guide",
  number =    "UUCS-94-016",
  year =      "1994",
  institution = "University of Utah",
  type =      "School of Computing Technical Report",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, map3d, cardiac
              heart, scientific visualization",
  url =       "http://www.sci.utah.edu/publications/macleod94/tr-map3d.ps",
  url =       "http://www.sci.utah.edu/publications/macleod94/tr-map3d.ps.Z",
}

@TechReport{SCI:Mac94e,
  author =    "R.S. MacLeod and C.R. Johnson and P.R. Ershler",
  title =     "Construction of a Human Torso Model from Magnetic
              Resonance Images for Problems in Computational
              Electrocardiography",
  number =    "UUCS-94-017",
  year =      "1994",
  institution = "University of Utah",
  type =      "School of Computing Technical Report",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              computational pde pdes computational partial
              differential equations evaporation, cardiac heart,
              scientific computing",
  url =       "http://www.sci.utah.edu/publications/macleod94/tr-mridoc.ps",
  url =       "http://www.sci.utah.edu/publications/macleod94/tr-mridoc.ps.Z",
}

@InProceedings{SCI:Mag2004a,
  author =    "M. Magnor and G. Kindlmann and C.D. Hansen and N.
              Duric",
  title =     "Constrained Inverse Volume Rendering for Planetary
              Nebulae",
  booktitle = c-VIS2004,
  pages =     "83--90",
  year =      "2004",
  keywords =  "scalar field methods, volume rendering, simian,
              inverse constrained volume rendering",
  url =       "http://www.sci.utah.edu/publications/magnor04/Magnor_Vis2004.pdf",
}

@Article{SCI:Mah2010a,
  author =    "C. Mahnkopf and T.J. Badger and N.S. Burgon and M.
              Daccarett and T.S. Haslam and C.T. Badger and C.J.
              McGann and N. Akoum and E. Kholmovski and R.S.
              Macleod and N.F. Marrouche",
  title =     "Evaluation of the left atrial substrate in
              patients with lone atrial fibrillation using
              delayed-enhanced MRI: implications for disease
              progression and response to catheter ablation",
  journal =   "Heart Rhythm",
  volume =    "7",
  number =    "10",
  pages =     "1475--1481",
  year =      "2010",
  pmid =      "20601148",
  keywords =  "af, atrial fibrillation, ablation",
  url =       "http://www.sci.utah.edu/publications/mahnkopf10/mahnkopf2010.pdf",
}

@Article{SCI:Mal2007a,
  author =    "M. Malik and Y. Birnbaum and R.S. MacLeod and V.
              Shusterman",
  title =     "Markers of impaired repolarization",
  journal =   "Journal of Electrocardiology",
  volume =    "40",
  number =    "1",
  pages =     "S54--S57",
  year =      "2007",
  month =     "January",
}

@InProceedings{SCI:Man2011a,
  author =    "J. Mandel and J.D. Beezley and A. Kochanski and
              V.Y. Kondratenko and L. Zhang and E. Anderson and
              J. Daniels II and C.T. Silva and C.R. Johnson",
  title =     "A wildland fire modeling and visualization
              environment",
  title_url =
              "http://ams.confex.com/ams/9FIRE/webprogram/Paper192277.html",

  booktitle = "Proceedings of the Ninth Symposium on Fire and
              Forest Meteorology",
  pages =     "(published online)",
  year =      "2011",
  keywords =  "vistrails, wildland fire modeling, openwfm.org",
  url =       "http://www.sci.utah.edu/publications/mandel11/Mandel_9fire2011.pdf",
}

@Misc{SCI:Map3d,
  author =    "CIBC",
  year =      "2011",
  note =      "map3d: Interactive scientific visualization tool
              for bioengineering data. Scientific Computing and
              Imaging Institute (SCI), Download from:
              http://www.sci.utah.edu/cibc/software.html",
  keywords =  "map3d, ncrr",
}

@Article{SCI:Mar2002a,
  author =    "W. Martin and E. Reinhard and P. Shirly and S.G.
              Parker and W. Thompson",
  title =     "Temporally Coherent Interactive Ray Tracing",
  journal =   "Journal of Graphics Tools",
  volume =    "7",
  number =    "2",
  pages =     "41--48",
  year =      "2002",
  keywords =  "rtrt real-time ray tracing, interactive rt
              distributed interactive ray tracing dirt",
  url =       "http://www.sci.utah.edu/publications/martin02/Temporally_Coherent_Inter_Raytracing.pdf",
}

@TechReport{SCI:Mar2006a,
  author =    "H. Marmanis and C.W. Hamman and R.M. Kirby",
  title =     "A One-Dimensional Model of the Navier-Stokes",
  number =    "UUSCI-2006-012",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  ", navier-stokes",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-012.pdf",
}

@InProceedings{SCI:Mar2008a,
  author =    "T. Martin and E. Cohen and R.M. Kirby",
  title =     "Volumetric Parameterization and Trivariate
              B-spline Fitting using Harmonic Functions",
  booktitle = "Proceedings of ACM Solid and Physical Modeling",
  pages =     "269-280",
  year =      "2008",
  location =  "Stony Brook, NY",
  note =      "Awarded Best Paper",
  url =       "http://www.sci.utah.edu/publications/martin08/martin_spm08.pdf",
}

@Article{SCI:Mar2009a,
  author =    "H.G. Martinez and S.I. Prajapati and C.A. Estrada
              and F. Jimenez and M.P. Quinones and I. Wu and A.
              Bahadur and A. Sanderson and C.R. Johnson and M.
              Shim and C. Keller and S.S. Ahuja",
  title =     "Microscopic Computed Tomography Based Virtual
              Histology for Visualization and Morphometry of
              Atherosclerosis in Diabetic Apolipoprotein E Mutant
              Mice",
  journal =   "Circulation: Journal of the American Heart
              Association",
  volume =    "120",
  number =    "9",
  pages =     "821--822",
  year =      "2009",
  keywords =  "virtual histology, diabetes, tomography,
              morphometry",
  url =       "http://www.sci.utah.edu/publications/martinez09/Prajapati-etal-CIRCULATION.pdf",
}

@Article{SCI:Mar2009b,
  author =    "H. Martinez and S. Prajapati and C. Estrada and F.
              Jimenez and I. Wu and A. Bahadur and A. Sanderson
              and C.R. Johnson and M. Shim and C. Keller and S.
              Ahuja",
  title =     "Microscopic Computed Tomography–Based Virtual
              Histology for Visualization and Morphometry of
              Atherosclerosis in Diabetic Apolipoprotein E Mutant
              Mice",
  journal =   "Circulation",
  volume =    "120",
  number =    "821--822",
  year =      "2009",
  url =       "http://www.sci.utah.edu/publications/martinez09/Martinez_Circulation2009.pdf",
}

@InProceedings{SCI:Mar2010a,
  author =    "C. Marc and C. Vachet and J.E. Blocher and G.
              Gerig and J.H. Gilmore and M.A. Styner",
  title =     "Changes of MR and DTI appearance in early human
              brain development",
  booktitle = "Proceedings of SPIE Medical Imaging 7623,
              762324",
  year =      "2010",
  doi =       "10.1117/12.844912",
}

@Article{SCI:Mar2011a,
  author =    "T. Martin and E. Cohen and R.M. Kirby",
  title =     "Direct Isosurface Visualization of Hex-Based
              High-Order Geometry and Attribute
              Representations",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics (TVCG)",
  volume =    "PP",
  number =    "99",
  pages =     "1--14",
  year =      "2011",
  issn =      "1077-2626",
  doi =       "10.1109/TVCG.2011.103",
  url =       "http://www.sci.utah.edu/publications/martin11/Martin_TVCG2011.pdf",
}

@InProceedings{SCI:Mas2004a,
  author =    "A. Mascarenhas and M. Isenburg and V. Pascucci and
              J. Snoeyink",
  title =     "Encoding Volumetric Meshes For Streaming
              Isosurface Extraction",
  booktitle = "Proceedings of the International Symposium on 3D
              Data Processing, Visualization, and Transmission
              (3DPVT)",
  pages =     "293--300",
  year =      "2004",
  month =     "September",
  note =      "UCRL-PROC-208696",
}

@InProceedings{SCI:Max2003a,
  author =    "N. Max and P. Williams and C.T. Silva and R.
              Cook",
  title =     "Volume Rendering for Curvilinear and Unstructured
              Grids",
  booktitle = "Proceedings of Computer Graphics International,
              2003",
  pages =     "210--215",
  year =      "2003",
  isbn =      "0-7695-1946-6",
  issn =      "1530-1052",
  url =       "http://www.sci.utah.edu/publications/max03/cgi2003.pdf",
}

@InProceedings{SCI:Mcc2001a,
  author =    "J. McCorquodale and J.D. de St. Germain and S.G.
              Parker and C.R. Johnson",
  title =     "The Uintah Parallelism Infrastructure: A
              Performance Evaluation on the SGI Origin 2000",
  booktitle = c-HPC2001,
  year =      "2001",
  month =     "Mar",
  location =  "Seattle",
  keywords =  "scirun, uintah, csafe, sgi",
  url =       "http://www.sci.utah.edu/publications/hpc01-dav/hpc01.pdf",
}

@InProceedings{SCI:Mcc2004a,
  author =    "P. McCormick and J. Inman and J. Ahrens and G.
              Roth and C.D. Hansen",
  title =     "Hardware-Accelerated System for Quantitatively
              Driven Visualization and Analysis",
  booktitle = c-VIS2004,
  pages =     "171--178",
  year =      "2004",
  keywords =  "volume rendering, hardware acceleration,
              visualization systems, multivariate
              visualization",
  url =       "http://www.sci.utah.edu/publications/mccormick04/vis04-scout04.pdf",
}

@Article{SCI:Mcc99a,
  author =    "P. McCormick and C.D. Hansen and E. Angel",
  title =     "The Deferred Accumulation Buffer",
  journal =   "Journal for Graphics Tools",
  volume =    "4",
  number =    "3",
  pages =     "35--46",
  year =      "1999",
}

@Article{SCI:Mcg2008a,
  author =    "C.J. McGann and E.G. Kholmovski and R.S. Oakes and
              J.J. Blauer and M. Daccarett and N. Segerson and
              K.J. Airey and N. Akoum and E. Fish and T.J. Badger
              and E.V. DiBella and D.L. Parker and R.S. MacLeod
              and N.F. Marrouche",
  title =     "New Magnetic Resonance Imaging-Based Method for
              Defining the Extent of Left Atrial Wall Injury
              After the Ablation of Atrial Fibrillation",
  journal =   "Journal of the American College of Cardiology",
  volume =    "52",
  number =    "15",
  pages =     "1263--1271",
  year =      "2008",
  month =     "Oct 7",
  url =       "http://www.sci.utah.edu/publications/mcgann08/mcg2008.pdf",
}

@Article{SCI:Mcg2011a,
  author =    "C.J. McGann and E.G. Kholmovski and J.J. Blauer
              and S. Vijayakumar and T.S. Haslam and J.E. Cates
              and E.V. DiBella and N.S. Burgon and B. Wilson and
              A.J. Alexander and M. Prastawa and M. Daccarett and
              G. Vergara and N.W. Akoum and D.L. Parker and R.S.
              MacLeod and N.F. Marrouche",
  title =     "Dark Regions of No-Reflow on Late Gadolinium
              Enhancement Magnetic Resonance Imaging Result in
              Scar Formation After Atrial Fibrillation
              Ablation",
  journal =   "Journal of the American College of Cardiology",
  volume =    "58",
  number =    "2",
  pages =     "177--185",
  year =      "2011",
  doi =       "10.1016/j.jacc.2011.04.008",
  url =       "http://www.sci.utah.edu/publications/mcgann11/McGann_JACC2011.pdf",
}

@InCollection{SCI:Mci2006a,
  author =    "L.C. McInnes and B.A. Allan and R. Armstrong and
              S.J. Benson and D.E. Bernholdt and T.L. Dahlgren
              and L.F. Diachin and M. Krishnan and J.A. Kohl and
              J.W. Larson and S. Lefantzi and J. Nieplocha and B.
              Norris and S.G. Parker and J. Ray and S. Zhou",
  title =     "Parallel PDE-Based Simulations Using the Common
              Component Architecture",
  booktitle = "Numerical Solution of Partial Differential
              Equations on Parallel Computers",
  pages =     "327--284",
  year =      "2006",
  editor =    "A.M. Bruaset, P. Bjorstad, and A. Tveito",
  series =    "Lecture Notes in Computational Science and
              Engineering",
  publisher = "Springer",
  isbn =      "3-540-29076-1",
  keywords =  "computational pde pdes computational partial
              differential equations, cca, simulation, parallel
              computing",
}

@Article{SCI:Mea2006a,
  author =    "S. Means and A.J. Smith and J. Shepherd and J.
              Shadid and J. Fowler and R. Wojcikiewicz and T.
              Mazel and G.D. Smith and B.S. Wilson",
  title =     "Reaction Diffusion Modeling of Calcium Dynamics
              with Realistic ER Geometry",
  journal =   j-BJ,
  volume =    "91",
  pages =     "537--557",
  year =      "2006",
  month =     "March",
  url =       "http://www.sci.utah.edu/publications/means06/means_biophysj_2006.pdf",
}

@InProceedings{SCI:Mel2006a,
  author =    "I. Melatti and R. Palmer and G. Sawaya and Y. Yang
              and R.M. Kirby and G. Gopalakrishnan",
  title =     "Parallel and Distributed Model Checking in Eddy",
  booktitle = "Model Checking Software: Proceedings of the 13th
              International SPIN Workshop ({SPIN} 2006)",
  volume =    "3925/2006",
  pages =     "108--125",
  year =      "2006",
  location =  "Austria",
  url =       "http://www.sci.utah.edu/publications/melatti06/melatti_SPIN06.pdf",
}

@TechReport{SCI:Men2008a,
  author =    "Q. Meng and J. Luitjens and M. Berzins",
  title =     "A Comparison of Load Balancing Algorithms for AMR
              in Uintah",
  number =    "UUSCI-2008-006",
  year =      "2008",
  institution = "University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2008-006.pdf",
}

@TechReport{SCI:Men2010a,
  author =    "Q. Meng and J. Luitjens and M. Berzins",
  title =     "Dynamic Task Scheduling for Scalable Parallel AMR
              in the Uintah Framework",
  number =    "UUSCI-2010-001",
  year =      "2010",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  keywords =  "csafe, c-safe, uintah, scirun, fluid structure,
              amr, mpm",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2010-001.pdf",
}

@InProceedings{SCI:Men2010b,
  author =    "Q. Meng and J. Luitjens and M. Berzins",
  title =     "Dynamic Task Scheduling for the Uintah
              Framework",
  booktitle = "Proceedings of the 3rd IEEE Workshop on Many-Task
              Computing on Grids and Supercomputers (MTAGS10)",
  pages =     "(in press)",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/meng10/Meng_TaskSchedulingUintah2010.pdf",
}

@InProceedings{SCI:Men2011a,
  author =    "Q. Meng and M. Berzins and J. Schmidt",
  title =     "Using Hybrid Parallelism to improve memory use in
              Uintah",
  booktitle = "Proceedings of the Teragrid 2011 Conference",
  pages =     "(accepted)",
  year =      "2011",
  publisher = "ACM",
  month =     "July",
  location =  "Salt Lake City, Utah",
  keywords =  "Uintah, C-SAFE, parallel computing",
  url =       "http://www.sci.utah.edu/publications/meng11/Meng_Tgrid11.pdf",
}

@InProceedings{SCI:Mer2008a,
  author =    "S. Mergen and C. Heuser and J. Freire",
  title =     "Querying Structured Information Sources on the
              Web",
  booktitle = "Proceedings of the 10th International Conference
              on Information Integration and Web-based
              Applications & Services",
  pages =     "470--476",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/mergen08/p470-mergen.pdf",
}

@Article{SCI:Mer2008b,
  author =    "D. Merck and G. Tracton and R. Saboo and J. Levy
              and E. Chaney and S. Pizer and S. Joshi",
  title =     "Training models of anatomic shape variability",
  journal =   "Medical Physics",
  volume =    "35",
  number =    "8",
  pages =     "3584--3596",
  year =      "2008",
  pmid =      "18777919",
  url =       "http://www.sci.utah.edu/publications/merck08/Merck_MedPhy2008.pdf",
}

@TechReport{SCI:Mey2005a,
  author =    "M.D. Meyer and H. Pfister and C.D. Hansen and C.R.
              Johnson",
  title =     "Image-Based Volume Rendering with Opacity Light
              Fields",
  number =    "UUSCI-2005-002",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scalar field methods, volume rendering, image
              based volume rendering ibvr",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-002.pdf",
}

@InProceedings{SCI:Mey2005b,
  author =    "M.D. Meyer and P. Georgel and R.T. Whitaker",
  title =     "Robust Particle Systems for Curvature Dependent
              Sampling of Implicit Surfaces",
  booktitle = "In Proceedings of the International Conference on
              Shape Modeling and Applications (SMI)",
  pages =     "124--133",
  year =      "2005",
  month =     "June",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/miriah05/smi05meyer.pdf",
}

@Article{SCI:Mey2007a,
  author =    "M.D. Meyer and B. Nelson and R.M. Kirby and R.T.
              Whitaker",
  title =     "Particle Systems for Efficient and Accurate Finite
              Element Visualization",
  journal =   "IEEE Transactions on Visualization and Computer
              Graphics",
  pages =     "1015--1026",
  year =      "2007",
  keywords =  "finite elements, particle systems",
  url =       "http://www.sci.utah.edu/publications/meyer07/tvcg07meyer.pdf",
}

@InProceedings{SCI:Mey2007b,
  author =    "M.D. Meyer and R.M. Kirby and R.T. Whitaker",
  title =     "Topology, Accuracy, and Quality of Isosurface
              Meshes Using Dynamic Particles",
  booktitle = "Proceedings of Visualization 2007 (IEEE TVCG)",
  volume =    "13",
  number =    "6",
  pages =     "1704--1711",
  year =      "2007",
  keywords =  "scalar field methods",
  url =       "http://www.sci.utah.edu/publications/meyer07/vis07meyer.pdf",
}

@InProceedings{SCI:Mey2008a,
  author =    "M.D. Meyer and R.T. Whitaker and R.M. Kirby and C.
              Ledergerber and H. Pfister",
  title =     "Particle-based Sampling and Meshing of Surfaces in
              Multimaterial Volumes",
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics",
  volume =    "14",
  number =    "6",
  pages =     "1539--1546",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/meyer08/Meyer_VCG2008.pdf",
}

@Article{SCI:Mil1994a,
  author =    "M.I. Miller and S. Joshi and D.R. Maffitt and J.G.
              McNally and U. Grenander",
  title =     "Membranes, Mitochondria and Amoebae: Shape
              Models",
  journal =   "Journal of Applied Statistics",
  volume =    "21",
  number =    "1, 2",
  pages =     "141--163",
  year =      "1994",
  editor =    "Kanti Mardia",
}

@Article{SCI:Mil1997a,
  author =    "M. Miller and A. Banerjee and G. Christensen and
              S. Joshi and N. Khaneja and U. Grenander and L.
              Matejic",
  title =     "Statistical Methods in Computational Anatomy",
  journal =   "Stat Methods Med Res",
  volume =    "6",
  number =    "3",
  pages =     "267--299",
  year =      "1997",
  month =     "September",
}

@InProceedings{SCI:Mil1997b,
  author =    "M.I. Miller and S. Joshi",
  title =     "Discussion of Mathematics for Object Recognition
              Shape, Invariance and Deformations",
  booktitle = "Proceedings of the Workshop on Mathematics for
              Object Recognition Shape, Invariance and
              Deformations",
  year =      "1997",
  editor =    "L. Younes",
  month =     "November",
}

@InProceedings{SCI:Mil1999a,
  author =    "M. Miller and C.D. Hansen and C.R. Johnson",
  title =     "The {SCIR}un Problem Solving Environment:
              Implementation within a Distributed Environment",
  booktitle = "Ninth {SIAM} Conference on Parallel Processing for
              Scientific Computing",
  year =      "1999",
  note =      "extended abstract",
  keywords =  "scirun, ncrr",
  url =       "http://www.sci.utah.edu/publications/siam99/siam99c.pdf",
}

@Article{SCI:Mil1999b,
  author =    "M.I. Miller and S.C. Joshi and G.E. Christensen",
  title =     "Large Deformation Fluid Diffeomorphisms For
              Landmark and Image Matching",
  journal =   "Brain Warping",
  pages =     "115--131",
  year =      "1999",
  editor =    "A. W. Toga and John Mazziotta",
}

@InProceedings{SCI:Mil2001,
  author =    "M. Miller and C. Moulding and J. Dongarra and C.R.
              Johnson",
  title =     "Grid-enabling Problem Solving Environments: A Case
              Study of {SCIR}un and Netsolv",
  booktitle = c-HPC2001,
  pages =     "98--103",
  year =      "2001",
  series =    "2001 Advanced Simulation Technologies
              Conference",
  organization = "Society for Modeling and Simulation
              International",
  month =     "April",
  keywords =  "scirun, netsolv, grid",
}

@InProceedings{SCI:Mil2006a,
  author =    "P. Miller and P.-T. Bremer and W. Cabot and A.
              Cook and D. Laney and A. Mascarenhas and V.
              Pascucci",
  title =     "Application of Morse Theory to Analysis of
              Rayleigh-Taylor Topology",
  booktitle = "10th International Workshop on the Physics of
              Compressible Turbulent Mixing",
  year =      "2006",
}

@InProceedings{SCI:Mil2009a,
  author =    "M. Milanic and V. Jazbinsek and D.F. Wang and J.
              Sinstra and R.S. Macleod and D.H. Brooks and R.
              Hren",
  title =     "Evaluation of Approaches of Solving
              Electrocardiographic Imaging Problem",
  booktitle = "Proceeding of Computers in Cardiology 2010",
  year =      "2009",
  month =     "September",
  location =  "Park City, Utah",
  url =       "http://www.sci.utah.edu/publications/milanic09/Milanic_CinC2009.pdf",
}

@InCollection{SCI:Mil98a,
  author =    "M. Miller and C.D. Hansen and C.R. Johnson",
  title =     "Simulation Steering with {SCIR}un in a Distributed
              Memory Environment",
  booktitle = "Applied Parallel Computing, 4th International
              Workshop, PARA'98",
  journal =   "Lecture Notes in Computer
              Science,Springer-Verlag",
  volume =    "1541",
  pages =     "366--376",
  year =      "1998",
  editor =    "B. Kagstrom, J. Dongarra, E. Elmroth and J.
              Wasniewski",
  series =    "Lecture Notes in Computer Science",
  publisher = "Springer-Verlag",
  address =   "Berlin",
  keywords =  "scirun",
  url =       "http://www.sci.utah.edu/publications/miller98/para98.ps.gz",
  url =       "http://www.sci.utah.edu/publications/miller98/para98.ps",
  url =       "http://www.sci.utah.edu/publications/miller98/hpdc98_abs.pdf",
}

@InProceedings{SCI:Mil98b,
  author =    "M. Miller and C.D. Hansen and S.G. Parker and C.R.
              Johnson",
  title =     "Simulation Steering with {SCIR}un in a Distributed
              Memory Environment",
  booktitle = "Seventh {IEEE} International Symposium on High
              Performance Distributed Computing (HPDC-7)",
  year =      "1998",
  month =     "Jul",
  url =       "http://www.sci.utah.edu/publications/miller98/hpdc98_abs.ps.Z",
  url =       "http://www.sci.utah.edu/publications/miller98/hpdc98_abs.ps",
  url =       "http://www.sci.utah.edu/publications/miller98/hpdc98_abs.pdf",
}

@TechReport{SCI:Mir2009a,
  author =    "H. Mirzaee and C. Eskilsson and S.J. Sherwin and
              R.M. Kirby",
  title =     "Comparison of Consistent Integration Versus
              Adaptive Quadrature for Taming Aliasing Errors",
  number =    "UUSCI-2009-008",
  year =      "2009",
  institution = "SCI Institute, University of Utah",
  type =      "SCI Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2009-008.pdf",
}

@Article{SCI:Mir2010a,
  author =    "H. Mirzaee and J.K. Ryan and R.M. Kirby",
  title =     "Quantificiation of Errors Introduced in the
              Numerical Approximation and Implementation of
              Smoothness-Increasing Accuracy Conserving (SIAC)
              Filtering of Discontinuous Galerkin (DG) Fields",
  journal =   "Journal of Scientific Computing",
  volume =    "45",
  pages =     "447-470",
  year =      "2010",
  url =       "http://www.sci.utah.edu/publications/mirzaee10/Mirzaee_JSC2010.pdf",
}

@Article{SCI:Mir2011a,
  author =    "H. Mirzaee and Liangyue and J.K. Ryan and R.M.
              Kirby",
  title =     "Smoothness-Increasing Accuracy-Conserving (SIAC)
              Postprocessing for Discontinuous Galerkin Solutions
              Over Structured Triangular Meshes",
  journal =   "SIAM Journal of Numerical Analysis",
  volume =    "49",
  number =    "5",
  pages =     "1899--1920",
  year =      "2011",
  url =       "http://www.sci.utah.edu/publications/mirzaee11/Mirzaee_JNA2011.pdf",
}

@Article{SCI:Mir2011b,
  author =    "H. Mirzaee and J.K. Ryan and R.M. Kirby",
  title =     "Efficient Implementation of Smoothness-Increasing
              Accuracy-Conserving (SIAC) Filters for
              Discontinuous Galerkin Solutions",
  journal =   "Journal of Scientific Computing",
  pages =     "(in press)",
  year =      "2011",
  doi =       "10.1007/s10915-011-9535-x",
  url =       "http://www.sci.utah.edu/publications/mirzaee11/Mirzaee_JSC2011.pdf",
}

@Article{SCI:Mlo2011a,
  author =    "M.J. Mlodzianoski and J.M. Schreiner and S.P.
              Callahan and K. Smolková and A. Dlasková and J.
              Šantorová and P. Ježek and J. Bewersdorf",
  title =     "Sample drift correction in 3D fluorescence
              photoactivation localization microscopy",
  journal =   "Optics Express",
  volume =    "19",
  number =    "16",
  pages =     "15009--15019",
  year =      "2011",
  doi =       "10.1364/OE.19.015009",
  url =       "http://www.sci.utah.edu/publications/mlodzianoski11/Mlodzianoski_OptExpress2011.pdf",
}

@InProceedings{SCI:Moo2005a,
  author =    "S.M. Moore and R.E. Debski and B. Ellis and P.J.
              McMahon and J.A. Weiss",
  title =     "All Three Regions of the Inferior Glenohumeral
              Ligament Contribute to Anterior Stability",
  booktitle = "Proceedings, 51st Annual Orthopaedic Research
              Society Meeting",
  volume =    "30",
  pages =     "804",
  year =      "2005",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/moore05/moore_ORS_05.pdf",
}

@Article{SCI:Moo2006a,
  author =    "C.R. Johnson and R. Moorhead and T. Munzner and H.
              Pfister and P. Rheingans and T. Yoo",
  title =     "NIH/NSF Visualization Research Challenges Report
              Summary",
  journal =   "IEEE Computing in Science and Engineering",
  pages =     "66-73",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/crj06/NIH-NSF-VRC-Report-Final.pdf",
}

@Article{SCI:Moo2009a,
  au