%%: Begin bibliography entries

@InProceedings{SCI:Ade94a,
  author =    "S. Adelson and C.D. Hansen",
  title =     "Fast Stereoscopic Images with Ray-Traced Volume
              Rendering", 
  booktitle = "Symposium on Volume Visualization",
  pages =     "3--9",
  year =      "1994",
  month =     "October",
  location =  "Washington, DC.",
  keywords =  "volume rendering",
}

@InProceedings{SCI:Adl2006a,
  author =    "G. Adluru and E.V.R. DiBella and R.T. Whitaker",
  title =     "Automatic Segmentation of Cardiac Short Axis
              Slices in Perfusion MRI", 
  booktitle = c-ISBI2006,
  pages =     "133--136",
  year =      "2006",
  keywords =  "ip image processing signal processing,
              segmentation, cardiac heart, ncrr, ip gp image
              processing goemetry processing", 
  url =       "http://www.sci.utah.edu/publications/adluru06/Adluru_ISBI_06.pdf",
}

@InProceedings{SCI:Adl2006b,
  author =    "G. Adluru and E.V.R. DiBella",
  title =     "Segmentation Based Registration of Myocardium in
              Cardiac Perfusion Images", 
  booktitle = c-ISMRM2006,
  volume =    "14",
  pages =     "1223",
  year =      "2006",
  keywords =  "ip image processing signal processing,
              segmentation, cardiac heart, ncrr, ip gp image
              processing goemetry processing", 
  url =       "http://www.sci.utah.edu/publications/adluru06/Adluru_ISMRM_06.pdf",
}

@InProceedings{SCI:Adl2006d,
  author =    "G. Adluru and E.V.R. DiBella and M.C. Schabel",
  title =     "Model-Based Registration for Dynamic Cardiac
              Perfusion MRI", 
  booktitle = "Journal of Magnetic Resonance Imaging",
  number =    "24",
  pages =     "1062--1070",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/adluru06/Adluru_JMRI_06.pdf",
}

@Article{SCI:Adl2007a,
  author =    "G. Adluru and S.P. Awate and T. Tasdizen and R.T.
              Whitaker and E.V.R. DiBella", 
  title =     "Temporally Constrained Reconstruction of Dynamic
              Cardiac Perfusion MRI", 
  journal =   "Magnetic Resonance in Medicine",
  volume =    "57",
  pages =     "1027--1036",
  year =      "2007",
  keywords =  "ncrr",
  url =       "http://www.sci.utah.edu/publications/adluru07/Adluru_MRM_07.pdf",
}

@InProceedings{SCI:Adl2007b,
  author =    "G. Adluru and R.T. Whitaker and E.V.R. DiBella",
  title =     "Spatio-Temporal Constrained Reconstruction of
              Sparse Dynamic Contrast Enhanced Radial MRI Data", 
  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging",
   pages =     "109--112",
  year =      "2007",
  keywords =  "ncrr",
  url =       "http://www.sci.utah.edu/publications/adluru07/Adluru_ISBI_07.pdf",
}

@InProceedings{SCI:Adl2007c,
  author =    "G. Adluru and E. Hsu and E.V.R. DiBella",
  title =     "Constrained Reconstruction of Sparse Cardiac MR
              DTI Data", 
  booktitle = "Proceedings of FIMH 2007",
  number =    "4466",
  pages =     "91--99",
  year =      "2007",
  series =    "LNCS",
  keywords =  "tensor field methods, diffusion tensor imaging,
              cardiac heart", 
  url =       "http://www.sci.utah.edu/publications/adluru07/Adluru_FIMH_07.pdf",
}

@InProceedings{SCI:Adl2008a,
  author =    "G. Adluru and E.V.R. DiBella and C.J. McGann",
  title =     "Data Acquisition and Reconstruction of
              Undersampled Radial MR Myocardial Perfusion", 
  booktitle = "Proceedings of the 11th Annual Scientific Sessions
              of the Society for Cardiovascular Magnetic
              Resonance (SCMR) 2008",
   pages =     "215",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/adluru08/Adluru_SCMR_08.pdf",
}

@InProceedings{SCI:Adl2008b,
  author =    "G. Adluru and E.V.R. DiBella",
  title =     "A Comparison of L1 and L2 Norms as Temporal
              Constraints for Reconstruction of Undersampled
              Dynamic Contrast Enhanced Cardiac Scans with
              Respiratory Motion", 
  booktitle = "Proceedings of the 16th Scientific Meeting &
              Exhibition of the International Society for
              Magnetic Resonance in Medicine (ISMRM) 2008",
   pages =     "340",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/adluru08/Adluru_ISMRM_08_a.pdf",
}

@InProceedings{SCI:Adl2008c,
  author =    "G. Adluru and E.V.R. DiBella",
  title =     "Data Reordering for Improved Constrained
              Reconstruction from Undersampled k-space Data", 
  booktitle = "Proceedings of the 16th Scientific Meeting &
              Exhibition of the International Society for
              Magnetic Resonance in Medicine (ISMRM) 2008",
   pages =     "3153",
  year =      "2008",
  url =       "http://www.sci.utah.edu/publications/adluru08/Adluru_ISMRM_08_b.pdf",
}

@Article{SCI:Ahm97a,
  author =    "I. Ahmad and M. Berzins",
  title =     "An Algorithm for {ODE}s from Atmospheric
              Dispersion Problems", 
  journal =   "Applied Numerical Mathematics",
  volume =    "25",
  pages =     "137--149",
  year =      "1997",
}

@InProceedings{SCI:Ahr95a,
  author =    "J. Ahrens and C.D. Hansen",
  title =     "Cost-Effective Data-Parallel Load Balancing",
  booktitle = "International Conference on Parallel Processing",
  pages =     "14--18",
  year =      "1995",
  month =     "August",
  location =  "Oconomowoc, Wi.",
}

@InProceedings{SCI:Ale2005a,
  author =    "Y. Alexeev and B.A. Allan and R.C. Armstrong and
              D.E. Bernholdt and T.L. Dahlgren and D. Gannon and
              C.L. Janssen and J.P. Kenny and M. Krishnan and
              J.A. Kohl and G. Kumfert and L.C. McInnes and J.
              Nieplocha and S.G. Parker and C. Rasmussen and T.L.
              Windus", 
  title =     "Component-Based Software for High-Performance
              Scientific Computing", 
  booktitle = "Journal of Physics: Conference Series",
  number =    "16",
  pages =     "536--540",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/alexeev05/jpconf5_16_073.pdf",
}

@Article{SCI:Alt2006a,
  author =    "I. Altintas and O. Barney and Z. Cheng and T.
              Critchlow and B. Ludaescher and S.G. Parker and A.
              Shoshani and M. Vouk", 
  title =     "Accelerating the Scientific Exploration Process
              with Scientific Workflows", 
  journal =   "J. Phys. : Conf. Ser.",
  volume =    "46",
  pages =     "468--478",
  year =      "2006",
  keywords =  "SciDAC Scientific Data Management (SDM) Center, ,
              scidac scientific data management (sdm) center", 
  url =       "http://www.sci.utah.edu/publications/altintas06/jpconf6_46_065.pdf",
}

@Article{SCI:And1992a,
  author =    "D.R. Anderson and J.A. Weiss and S. Takai and K.J.
              Ohland and S.L-Y. Woo", 
  title =     "Healing of the Medial Collateral Ligament
              Following a Triad Injury: A Biomechanical and
              Histological Study of the Knee in Rabbits", 
  journal =   "Journal of Orthopaedic Research",
  volume =    "10",
  pages =     "485--495",
  year =      "1992",
}

@InProceedings{SCI:And2004a,
  author =    "A.E. Anderson and C.L. Peters and B.D. Tuttle and
              J.A. Weiss", 
  title =     "Development and Validation of a Subject-Specific
              Finite Element Model of the Pelvis: Assessment of
              Model Sensitivity", 
  booktitle = c-CMBBE2004,
  pages =     "(6 pages)",
  year =      "2004",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational mechanics, computational
              biomechanics, ip image processing signal
              processing, segmentation, surface processing", 
  url =       "http://www.sci.utah.edu/publications/anderson04/25B.pdf",
}

@InProceedings{SCI:And2004b,
  author =    "A.E. Anderson and C.L. Peters and B.D. Tuttle and
              J.A. Weiss", 
  title =     "A Subject-Specific Finite Element Model of the
              Pelvis Accurately Predicts Cortical Strains Under
              Acetabular Loading", 
  booktitle = c-ORS2004,
  volume =    "29",
  pages =     "1334",
  year =      "2004",
  month =     "March",
  location =  "San Francisco, {CA}",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational mechanics, computational
              biomechanics, segmentation, surface processing", 
}

@Article{SCI:And2005a,
  author =    "A.E. Anderson and C.L. Peters and B.D. Tuttle and
              J.A. Weiss", 
  title =     "A Subject-Specific Finite Element Model of the
              Pelvis: Development, Validation and Sensitivity
              Studies", 
  journal =   j-JBE,
  volume =    "127",
  number =    "3",
  pages =     "364--373",
  year =      "2005",
  keywords =  "finite elements, computational mechanics,
              computational biomechanics", 
  url =       "http://www.sci.utah.edu/publications/anderson05/Anderson_JBME_2005.pdf",
}

@TechReport{SCI:And2006a,
  author =    "E.W. Anderson and S.P. Callahan and G.T.Y. Chen
              and J. Freire and E. Santos and C.E. Scheidegger
              and C.T. Silva and H.T. Vo", 
  title =     "Visualization in Radiation Oncology: Towards
              Replacing the Laboratory Notebook", 
  number =    "UUSCI-2006-017",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scalar field methods",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-017.pdf",
}

@Article{SCI:And2006b,
  author =    "A.E. Anderson and B.J. Ellis and J.A. Weiss",
  title =     "Verification, Validation and Sensitivity Studies
              in Computational Biomechanics", 
  journal =   "Computer Methods in Biomechanics and Biomedical
              Engineering",
   pages =     "(in press)",
  year =      "2006",
  keywords =  "mrl, computational mechanics, computational
              biomechanics", 
  url =       "http://www.sci.utah.edu/publications/anderson06/anderson_cmbbe_2007.pdf",
}

@Article{SCI:And2007a,
  author =    "A.E. Anderson and B.J. Ellis and C.L. Peters and
              J.A. Weiss", 
  title =     "Factors Influencing Cartilage Thickness
              Measurements with Multi-Detector CT: A Phantom
              Study", 
  journal =   "Radiology",
  pages =     "(in press)",
  year =      "2007",
  month =     "April",
  keywords =  "mrl",
}

@InProceedings{SCI:And2007b,
  author =    "E.W. Anderson and S.P. Callahan and C.E.
              Scheidegger and J.M. Schriener and C.T. Silva", 
  title =     "Hardware-Assisted Point-Based Volume Rendering of
              Tetrahedral Meshes", 
  booktitle = "Proceedings of SIBGRAPI 2007",
  pages =     "(accepted)",
  year =      "2007",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/anderson07/pbvr.pdf",
  related-images = "465",
}

@InProceedings{SCI:And2007c,
  author =    "E.W. Anderson and G.A. Preston and C.T. Silva",
  title =     "Towards Development of a Circuit Based Treatment
              for Impaired Memory: A Multidisciplinary Approach",
              
  booktitle = "Proceedings of IEEE EMBS Neural Engineering
              2007",
   pages =     "(accepted)",
  year =      "2007",
  keywords =  "neuro brain",
  url =       "http://www.sci.utah.edu/publications/anderson07/embs2007_neuro.pdf",
}

@Article{SCI:And2007d,
  author =    "A.E. Anderson and B.J. Ellis and J.A. Weiss",
  title =     "Verification, Validation and Sensitivity Studies
              in Computational Biomechanics", 
  journal =   "Computer Methods in Biomechanics and Biomedical
              Engineering",
   volume =    "10",
  number =    "3",
  pages =     "171--184",
  year =      "2007",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/anderson07/anderson_cmbbe_2007.pdf",
}

@InProceedings{SCI:And2007e,
  author =    "E.W. Anderson and S.P. Callahan and D.A. Koop and
              E. Santos and C.E. Scheidegger and H.T. Vo and J.
              Freire and C.T. Silva", 
  title =     "VisTrails: Using Provenance to Streamline Data
              Exploration", 
  booktitle = "Poster Proceedings of the International Workshop
              on Data Integration in the Life Sciences (DILS)
              2007",
   year =      "2007",
  note =      "Poster presentation",
  keywords =  " vistrails",
}

@Article{SCI:Ape2000a,
  author =    "Th. Apel and M. Berzins and P.K. Jimack and G.
              Kunert and A. Plaks and I. Tsukerman and M.
              Walkley", 
  title =     "Mesh Shape and Anistropic Elements: Theory and
              Practice", 
  journal =   "The Mathematics of Finite Elements and
              Applications X",
   pages =     "367--376",
  year =      "2000",
  editor =    "J.R. Whiteman",
  publisher = "Elsevier",
  keywords =  "finite elements, meshing",
  url =       "http://www.sci.utah.edu/publications/apel00/ABJKPTW99.pdf",
}

@Article{SCI:Arm2006a,
  author =    "R. Armstrong and G. Kumfert and L.C. McInnes and
              S. Parker and B. Allan and M. Sottile and T.
              Epperly and T. Dahlgren", 
  title =     "The CCA Component Model for High-Performance
              Scientific Computing", 
  journal =   "Concurrency and Computation: Practice &
              Experience",
   volume =    "18",
  number =    "2",
  pages =     "215--229",
  year =      "2006",
  publisher = "John Wiley and Sons Ltd.",
  address =   "Chichester, UK",
  issn =      "1532-0626",
  keywords =  "ncrr, Common Component Architecture, CCA",
}

@InProceedings{SCI:Arm99a,
  author =    "R. Armstrong and D. Gannon and A. Geist and K.
              Keahey and S. Kohn and L. McInnes and S. Parker and
               B. Smolinksi", 
  title =     "Toward a Common Component Architecture for
              High-Performance Scientific Computing", 
  booktitle = "Proceedings of the 8th {IEEE} International
              Symposium on High Performance Distributed
              Computation ({HPDC})",
   year =      "1999",
  month =     "August",
  keywords =  "scirun, CCA",
  url =       "http://www.sci.utah.edu/publications/hpdc99/cca.ps.gz",
  url =       "http://www.sci.utah.edu/publications/hpdc99/cca.pdf",
}

@Article{SCI:Ate2006a,
  author =    "G.A. Ateshian and B.J. Ellis and J.A. Weiss",
  title =     "Equivalence Between Instantaneous Biphasic and
              Incompressible Elastic Material Response", 
  journal =   "Journal of Biomechanical Engineering",
  pages =     "(in press)",
  year =      "2006",
  month =     "November",
  keywords =  "mrl, computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/ateshian06/ateshian_jbme_2007.pdf",
}

@Article{SCI:Ate2007a,
  author =    "G.A. Ateshian and B.J. Ellis and J.A. Weiss",
  title =     "Equivalence Between Short-Time Biphasic and
              Incompressible Elastic Material Response", 
  journal =   "Journal of Biomechanical Engineering",
  volume =    "129",
  number =    "3",
  pages =     "405--412",
  year =      "2007",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/ateshian07/ateshian_jbme_2007.pdf",
}

@Article{SCI:Att2006a,
  author =    "L. Atty and N. Holzschuch and M. Lapierre and
              J.-M. Hasenfratz and C.D. Hansen and F.X. Sillion",
              
  title =     "Soft Shadow Maps: Efficient Sampling of Light
              Source Visibility", 
  journal =   "Computer Graphics Forum",
  volume =    "25",
  number =    "4",
  pages =     "725--741",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/atty06/Soft_Shadow_Maps.pdf",
}

@TechReport{SCI:Awa2005a,
  author =    "S.P. Awate and T. Tasdizen and R.T. Whitaker",
  title =     "Nonparametric Statistics of Image Neighborhoods
              for Unsupervised Texture Segmentation", 
  number =    "UUSCI-2005-003",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "segmentation",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-003.pdf",
}

@TechReport{SCI:Awa2005b,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Higher-Order Image Statistics for Unsupervised,
              Information-Theoretic, Adaptive, Image Filtering", 
  number =    "UUSCI-2005-004",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-004.pdf",
}

@TechReport{SCI:Awa2005c,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Nonparametric Neighborhood Statistics for MRI
              Denoising", 
  number =    "UUSCI-2005-005",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-005.pdf",
}

@InProceedings{SCI:Awa2005e,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Nonparametric Neighborhood Statistics for MRI
              Denoising", 
  booktitle = "In Proc. Int. Conf. Information Processing in
              Medical Imaging (IPMI), 2005. Lecture Notes in
              Computer Science",
   volume =    "3565",
  pages =     "677--688",
  year =      "2005",
  month =     "July",
  keywords =  "ip image processing signal processing, ncrr",
}

@InProceedings{SCI:Awa2005f,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Higher-Order Image Statistics for Unsupervised,
              Information-Theoretic, Adaptive, Image Filtering", 
  booktitle = "Proceedings of the IEEE Int. Conf. Computer Vision
              and Pattern Recognition (CVPR)",
   pages =     "44--51",
  year =      "2005",
  keywords =  "ip image processing signal processing, ncrr",
}

@Article{SCI:Awa2005g,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Unsupervised, Information-Theoretic, Adaptive
              Image Filtering for Image Restoration", 
  journal =   j-PAMI,
  pages =     "(accepted)",
  year =      "2005",
  keywords =  "ip image processing signal processing, ncrr",
}

@TechReport{SCI:Awa2006a,
  author =    "S.P. Awate and T. Tasdizen and N. Foster and R.T.
              Whitaker", 
  title =     "Adaptive, Nonparametric Markov Modeling for
              Unsupervised, MRI Brain-Tissue Classification", 
  number =    "UUSCI-2006-008",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-008.pdf",
}

@InProceedings{SCI:Awa2006b,
  author =    "S.P. Awate and T. Tasdizen and R.T. Whitaker",
  title =     "Unsupervised Texture Segmentation with
              Nonparametric Neighborhood Statistics", 
  booktitle = "Proceedings of The European Conference on Computer
              Vision (ECCV) 2006 Springer, Lecture Notes in
              Computer Science",
   pages =     "494--507",
  year =      "2006",
  keywords =  "segmentation, ip image processing signal
              processing, crcns", 
}

@TechReport{SCI:Awa2006c,
  author =    "S.P. Awate and T. Tasdizen and R.T. Whitaker",
  title =     "Unsupervised Texture Segmentation with
              Nonparametric Neighborhood Statistics", 
  number =    "UUSCI-2006-011",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing,
              segmentation", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-011.pdf",
}

@Article{SCI:Awa2006d,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Unsupervised, Information-Theoretic, Adaptive
              Image Filtering for Image Restoration", 
  journal =   j-PAMI,
  volume =    "28",
  number =    "3",
  pages =     "364--376",
  year =      "2006",
  month =     "March",
  keywords =  "ip image processing signal processing, ncrr",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_UINTA_PAMI.pdf",
}

@TechReport{SCI:Awa2006e,
  author =    "S.P. Awate and R.T. Whitaker",
  title =     "Adaptive Markov Models for Information-Theoretic
              Empirical-Bayesian MRI Denoising", 
  number =    "UUSCI-2006-030",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-030.pdf",
}

@PhdThesis{SCI:Awa2006f,
  author =    "S.P. Awate",
  title =     "Adaptive, Nonparametric Markov Models and
              Information-Theoretic Methods for Image Restoration
              and Segmentation", 
  year =      "2006",
  school =    "School of Computing, University of Utah",
  month =     "December",
  note =      "PhD Thesis",
  keywords =  "ip image processing signal processing,
              segmentation", 
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_Dissertation.pdf",
}

@InProceedings{SCI:Awa2006g,
  author =    "S.P. Awate and E.V.R. DiBella and T. Tasdizen and
              R.T. Whitaker", 
  title =     "Model-Based Image Reconstruction for Dynamic
              Cardiac Perfusion MRI from Sparse Data", 
  booktitle = "Proceedings of the 2006 IEEE Int. Conf.
              Engineering and Biology Society (EMBC)",
   pages =     "936--941",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_ModelBasedCardiacPerfusionReconstruct.pdf",
}

@Article{SCI:Awa2006h,
  author =    "Suyash P. Awate and Tolga Tasdizen and Norman L.
              Foster and Ross T. Whitaker", 
  title =     "Adaptive, Nonparametric Markov Modeling for
              Unsupervised, MRI Brain-Tissue Classification", 
  journal =   "Medical Image Analysis (MEDIA)",
  volume =    "10",
  number =    "5",
  pages =     "726--739",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/suyash06/Awate_MRI_Segmentation.pdf",
}

@Article{SCI:Awa2007a,
  author =    "S. Awate and R. Whitaker",
  title =     "Feature-Preserving MRI Denoising: A Nonparametric
              Empirical-Bayes Approach", 
  journal =   "IEEE Transactions on Medical Imaging",
  pages =     "(accepted)",
  year =      "2007",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/awate07/Awate_MRI_Denoising_TMI.pdf",
}

@InProceedings{SCI:Aya88a,
  author =    "N. Ayache and C.D. Hansen",
  title =     "Rectification of Images for Binocular and
              Trinocular Stereovision", 
  booktitle = "International Conference on Pattern Recognition",
  number =    "RR-0860",
  year =      "1988",
  month =     "November",
  location =  "Rome, Italy",
}

@Conference{SCI:Bab2006a,
  author =    "S. Babaeizadeh and D.H. Brooks",
  title =     "Imaging Error from Mislocation of Surface Sensors:
              Sensitivity, Detection, and Estimate Correction,
              with Application to EIT", 
  booktitle = "Proceedings of the IEEE International Conference
              on Acoustics, Speech, and Signal Processing",
   year =      "2006",
  address =   "Toulouse, France",
  month =     "May",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr, bioelectric
              fields", 
}

@Article{SCI:Bag1993a,
  author =    "C.M. Bagi and M. Mecham and J.A. Weiss and S.C.
              Miller", 
  title =     "Comparative Morphometric Changes in Rat Cortical
              Bone Following Ovariectomy and/or Immobilization", 
  journal =   "Bone",
  volume =    "14",
  pages =     "877--883",
  year =      "1993",
}

@Misc{SCI:Bal2002a,
  author =    "J. Balling and C.R. Johnson",
  title =     "Brain Visualization of Facial Recognition {MRI}
              Data", 
  year =      "2002",
  howpublished = "Presented before the Utah State Legislature",
  keywords =  "undergrad, fmri, ",
  url =       "http://www.sci.utah.edu/publications/balling02/brain_vis_MRI.pdf",
}

@InProceedings{SCI:Ban1995a,
  author =    "A. Banerjee and G.E. Christensen and J. Haller and
              S. Joshi and M.E. Raichle and M.I. Miller", 
  title =     "Accommodating anatomical variability in functional
              imaging via deformable templates", 
  booktitle = "Proc. 33rd Annual Allerton Conference on
              Communication, Control and Computing",
   pages =     "275--284",
  year =      "1995",
}

@InProceedings{SCI:Bas2006a,
  author =    "S. Basu and P.T. Fletcher and R.T. Whitaker",
  title =     "Rician Noise Removal in Diffusion Tensor MRI",
  booktitle = "Medical Image Computing and Computer Assisted
              Intervention (MICCAI)",
   volume =    "LNCS 4190",
  pages =     "117--125",
  year =      "2006",
  month =     "October",
  keywords =  "ip image processing signal processing",
  url =       "http://www.sci.utah.edu/publications/basu06/BasuDTIFilteringMICCAI2006.pdf",
}

@InProceedings{SCI:Bav2005a,
  author =    "L. Bavoil and S.P. Callahan and P.J. Crossno and
              J. Freire and C.E. Scheidegger and C.T. Silva and
              H.T. Vo", 
  title =     "Vistrails: Enabling Interactive Multiple-View
              Visualizations", 
  booktitle = c-VIS2005,
  pages =     "18",
  year =      "2005",
  keywords =  "scientific visualization, pses",
  url =       "http://www.sci.utah.edu/publications/bavoil05/vistrails.pdf",
}

@TechReport{SCI:Bav2006a,
  author =    "L. Bavoil and S.P. Callahan and C.T. Silva",
  title =     "Robust Soft Shadow Mapping with Depth Peeling",
  number =    "UUSCI-2006-028",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-028.pdf",
}

@TechReport{SCI:Bav2006b,
  author =    "L. Bavoil and S.P. Callahan and A. Lefohn and
              J.L.D. Comba and C.T. Silva", 
  title =     "Multi-Fragment Effects on the GPU using the
              k-Buffer", 
  number =    "UUSCI-2006-032",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-032.pdf",
}

@InProceedings{SCI:Bav2007a,
  author =    "L. Bavoil and S.P. Callahan and A. Lefohn and
              J.L.D. Comba and C.T. Silva", 
  title =     "Multi-Fragment Effects on the GPU using the
              k-Buffer", 
  booktitle = "{ACM} Symposium on Interactive {3D} Graphics and
              Games (i3D)",
   pages =     "97--104",
  year =      "2007",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/bavoil07/kbuffer_preprint.pdf",
}

@Article{SCI:Bav2007b,
  author =    "L. Bavoil and S. Callahan and and C.T. Silva",
  title =     "Robust Soft Shadow Mapping with Depth Peeling",
  journal =   "Journal of Graphics Tools",
  pages =     "(accepted)",
  year =      "2007",
}

@Article{SCI:Bav2008a,
  author =    "L. Bavoil and S. Callahan and and C. Silva",
  title =     "Robust Soft Shadow Mapping with Depth Peeling",
  journal =   "Journal of Graphics Tools",
  pages =     "(to appear)",
  year =      "2008",
}

@InProceedings{SCI:Bea96a,
  author =    "D.M. Beazley",
  title =     "Using SWIG to control, prototype, and debug C
              programs with Python", 
  booktitle = "4th International Python Conference",
  year =      "1996",
}

@Article{SCI:Bea97,
  author =    "D.M. Beazley",
  title =     "Using SWIG to control, prototype, and debug C
              program with Python", 
  journal =   "4th International Python Conference",
  year =      "1997",
  keywords =  ", swig. python",
}

@Article{SCI:Bel2007a,
  author =    "M.K. Belmonte and J.C. Mazziotta and N.J. Minshew
              and A.C. Evans and E. Courchesne and S.R. Dager and
              S.Y. Bookheimer and E.H. Aylward and D.G. Amaral
              and R.M. Cantor and D.C. Chugani and A.M. Dale and
              C. Davatzikos and G. Gerig and M.R. Herbert and
              J.E. Lainhart and D.G. Murphy and J. Piven and A.L.
              Reiss and R.T. Schultz and T.A. Zeffiro and S.
              Levi-Pearl and C. Lajonchere and S.A. Colamarino", 
  title =     "Offering to Share: How to Put Heads Together in
              Autism Neuroimaging", 
  journal =   "Journal of Autism and Developmental Disorders
              JADD",
   pages =     "(in print)",
  year =      "2007",
}

@Article{SCI:Ben2006a,
  author =    "C. Benthin and I. Wald and P. Slusallek",
  title =     "Techniques for Interactive Ray Tracing of Bezier
              Surfaces", 
  journal =   "Journal of Graphics Tools",
  volume =    "11",
  number =    "2",
  pages =     "1--16",
  year =      "2006",
  keywords =  "rtcenter",
}

@InProceedings{SCI:Ben2006b,
  author =    "C. Benthin and I. Wald and M. Scherbaum and H.
              Friedrich", 
  title =     "Ray Tracing on the CELL Processor",
  booktitle = "Proceedings of the 2006 IEEE Symposium on
              Interactive Ray Tracing",
   pages =     "25--32",
  year =      "2006",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/benthin06/cell.pdf",
}

@TechReport{SCI:Ben2007a,
  author =    "C. Benthin and S. Boulos and D. Lacewell and I.
              Wald", 
  title =     "Packet-based Ray Tracing of Catmull-Clark
              Subdivision Surfaces", 
  number =    "UUSCI-2007-011",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, rtcenter", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-011.pdf",
}

@Misc{SCI:Ber1996b,
  author =    "M. Berzins and P. Pratt",
  title =     "A Problem Solving Environment for Convection
              Dominated {PDE}s", 
  year =      "1996",
  month =     "September",
  keywords =  "computational pde pdes computational partial
              differential equations, pse grid computing,
              sprint2d", 
  url =       "http://www.sci.utah.edu/publications/berzins96/berzins96problem.pdf",
}

@Article{SCI:Ber1997c,
  author =    "M. Berzins and P.J. Capon and P.K. Jimack",
  title =     "On Spatial Adaptivity and Interpolation when Using
              the Method of Lines", 
  journal =   "Applied Numerical Mathematics: Transactions of
              IMACS",
   volume =    "26",
  number =    "1--2",
  pages =     "117--133",
  year =      "1997",
  url =       "http://www.sci.utah.edu/publications/berzins97/berzins91spatial.pdf",
}

@InProceedings{SCI:Ber1999a,
  author =    "M. Berzins and L.J.K. Durbeck",
  title =     "Unstructured Mesh Methods Applied to Hyperbolic
              {PDE}s with Source Terms: Error Estimates and Mesh
              Quality", 
  booktitle = "Godunov Methods: Theory and Applications
              Conference and Short Course",
   year =      "1999",
  publisher = "Oxford. numeritek Ltd.URL",
  month =     "October",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, scirun, atmospherics
              weather meterology", 
  url =       "http://www.sci.utah.edu/publications/berzins99/unstructured-mesh-methods-applied.pdf",
}

@InCollection{SCI:Ber2000a,
  author =    "M. Berzins and L. Durbeck and P.K. Jimack and M.
              Walkley", 
  title =     "Mesh Quality and Moving and Meshes for 2D and 3D
              Unstructured Mesh Solvers", 
  booktitle = "Von Karman Institute for Fluid Mechanics 31st
              Lecture Series on Computational Fluid Mechanics",
   year =      "2000",
  editor =    "N.P. Weatherill and H. Deconinck",
  institution = "Von Karman Institute for Fluid Mechanics",
  institution-url = "http://www.vki.ac.be/",
  month =     "March",
  issn =      "0377-8312",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, atmospherics weather
              meterology, scientific computing", 
  url =       "http://www.sci.utah.edu/publications/ldurbeck/vki_00.ps",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/vki_00.pdf",
}

@Article{SCI:Ber2000b,
  author =    "M. Berzins",
  title =     "An Introduction to Mesh Quality",
  journal =   "Lectures notes for 31st Lecture Series on
              Computational Fluid Mechanics",
   pages =     "21 pages",
  year =      "2000",
  editor =    "N.P. Weatherill and H. Deconink",
  institution = "Von Karman Institute for Fluid Mechanics",
  month =     "March",
  location =  "Rhode st Genessee, Brussels, Belgium",
  issn =      "0377-8312",
}

@Article{SCI:Ber2000d,
  author =    "M. Berzins",
  title =     "Solution-Based Mesh Quality Indicators for
              Triangular and Tetrahedral Meshes", 
  journal =   "International Journal of Computational Geometry
              and Applications",
   volume =    "10",
  number =    "3",
  pages =     "333-346",
  year =      "2000",
  month =     "June",
}

@Article{SCI:Ber2000e,
  author =    "M. Berzins",
  title =     "A New Metric for Dynamic Load Balancing",
  journal =   "Applied Mathematical Modelling",
  volume =    "25",
  pages =     "141--151",
  year =      "2000",
  note =      "Special issue on dynamic load balancing",
}

@Article{SCI:Ber2000g,
  author =    "M. Berzins",
  title =     "A Data-Bounded Quadratic Interpolant on Triangles
              and Tetrahedra", 
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "22",
  number =    "1",
  pages =     "177--197",
  year =      "2000",
}

@InProceedings{SCI:Ber2001a,
  author =    "M. Bertram and D. Laney and M. Duchaineau and C.
              Hansen and B. Hamann and K. Joy", 
  title =     "Wavelet Representation of Contour Sets",
  booktitle = c-VIS2001,
  pages =     "303--310, 566",
  year =      "2001",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, ip image
              processing signal processing, surface processing", 
  url =       "http://www.sci.utah.edu/publications/bertram01/vis01-bertram.pdf",
}

@InCollection{SCI:Ber2001b,
  author =    "M. Berzins and A.S. Tomlin and S. Ghorai and I.
              Ahmad J.Ware", 
  title =     "Unstructured Mesh Adaptive Mesh {MOL} Solvers for
              Atmospheric Reacting Flow Problems", 
  booktitle = "The Adaptive Method of Lines",
  pages =     "317--351",
  year =      "2001",
  editor =    "A. Vande Wouwer, Ph. Saucez and W. Schiesser",
  publisher = "CRC Press, Boca Raton, Florida, USA.",
  note =      "invited chapter",
  isbn =      "1-58488-231-X",
}

@InCollection{SCI:Ber2001c,
  author =    "M. Berzins and L. Durbeck",
  title =     "Mesh Quality for Unstructured Mesh Riemann Solver
              based methods applied to Hyperbolic Equations with
              Source Terms", 
  booktitle = "Godunonv Methods: Theory and Applications",
  pages =     "117--124",
  year =      "2001",
  editor =    "E. Toro et al.",
  publisher = "Kluwer Academic/Plenum",
  note =      "Proc. of Godunov Conf. October 18-22, Oxford UK",
}

@Article{SCI:Ber2001d,
  author =    "M. Berzins",
  title =     "Modified Mass Matrices and Positivity Preservation
              for Hyperbolic and Parabolic {PDE}s", 
  journal =   "Communications in Numerical Methods in
              Engineering",
   volume =    "17",
  pages =     "659--666",
  year =      "2001",
}

@Article{SCI:Ber2003a,
  author =    "M. Berzins",
  title =     "Variable Order Finite Elements and Positivity
              Preservation for Hyperbolic {PDE}s", 
  journal =   "Applied Numerical Mathematics",
  volume =    "48",
  number =    "3-4",
  pages =     "271--292",
  year =      "2003",
  month =     "August",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, Finite
              elements, scientific computing, finite elements", 
}

@Article{SCI:Ber2003b,
  author =    "M. Berzins and A.G. Wilson",
  title =     "Spatial Interaction Models and Fisher Information
              Theory A New Calibration Model", 
  journal =   "Environment and Planning",
  volume =    "35",
  pages =     "2161--2176",
  year =      "2003",
}

@InProceedings{SCI:Ber2003c,
  author =    "M. Bertram and X. Tricoche and H. Hagen",
  title =     "Adaptive Smooth Scattered Data Approximation for
              Largescale Terrain Visualization", 
  booktitle = "Proceedings of the Joint Eurographics-IEEE TCVG
              Symposium on Visualization: Data Visualization
              2003",
   pages =     "177--184",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/bertram03/terrain.pdf",
}

@TechReport{SCI:Ber2004a,
  author =    "Fabio F. Bernardon and Christian A. Pagot and Joao
              L.D. Comba and Claudio T. Silva", 
  title =     "{GPU}-based Tiled Ray Casting using Depth
              Peeling", 
  number =    "UUSCI-2004-006",
  year =      "2004",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2004-006.pdf",
}

@Article{SCI:Ber2004b,
  author =    "M. Berzins",
  title =     "Variable Order Finite Elements and Positivity
              Preservation for Hyperbolic PDEs", 
  journal =   "Applied Numerical Mathematics",
  volume =    "48",
  number =    "3-4",
  pages =     "253--439",
  year =      "2004",
  month =     "March",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational pde pdes computational partial
              differential equations", 
}

@InProceedings{SCI:Ber2005a,
  author =    "F. Bertrand and R. Bramley and K. Damevski and D.
              Bernholdt and J. Kohl and J. Larson and A.
              Sussman", 
  title =     "Data Redistribution and Remote Method Invocation
              in Parallel Component Architectures", 
  booktitle = c-IPDPS2005,
  year =      "2005",
  note =      "(Accepted, Best Paper Award)",
}

@TechReport{SCI:Ber2005b,
  author =    "F.F. Bernardon and S.P. Callahan and J.L.D. Comba
              and C.T. Silva", 
  title =     "Volume Rendering of Time-Varying Scalar Fields on
              Unstructured Meshes", 
  number =    "UUSCI-2005-006",
  year =      "2005",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "scalar field methods, volume rendering",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2005-006.pdf",
}

@InProceedings{SCI:Ber2005c,
  author =    "M. Berzins and R.M. Kirby and C.R. Johnson",
  title =     "Integrating Teaching and Research in HPC:
              Experiences and Opportunities", 
  booktitle = c-ICCS2005,
  pages =     "36--43",
  year =      "2005",
  location =  "Atlanta, GA",
}

@Article{SCI:Ber2005d,
  author =    "M. Berzins",
  title =     "Preserving Positivity for Hyperbolic PDEs Using
              Variable-Order Finite Elements with Bounded
              Polynomials", 
  journal =   "Applied Numerical Mathematics",
  volume =    "52",
  number =    "2-3",
  pages =     "197--217",
  year =      "2005",
  month =     "February",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              computational pde pdes computational partial
              differential equations", 
}

@InProceedings{SCI:Ber2006a,
  author =    "F.F. Bernardon and S.P. Callahan and J.L.D. Comba
              and C.T. Silva", 
  title =     "Interactive Volume Rendering of Unstructured Grids
              with Time-Varying Scalar Fields", 
  booktitle = "Proceedings of the Eurographics Symposium on
              Parallel Graphics and Visualization",
   pages =     "51--58",
  year =      "2006",
  keywords =  "scalar field methods, volume rendering",
  url =       "http://www.sci.utah.edu/publications/bernardon06/egpgv2006.pdf",
}

@InProceedings{SCI:Ber2006b,
  author =    "M. Berzins",
  title =     "Is there Still More to Science than Simulation?",
  number =    "UUSCI-2006-031",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-031.pdf",
}

@TechReport{SCI:Ber2006c,
  author =    "M. Berzins",
  title =     "Adaptive Polynomial Interpolation on Evenly Spaced
              Meshes", 
  number =    "UUSCI-2006-033",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-033.pdf",
}

@Article{SCI:Ber2007a,
  author =    "F.F. Bernardon and S.P Callahan and J.L.D. Comba
              and C.T. Silva", 
  title =     "An Adaptive Framework for Visualizing Unstructured
              Grids with Time-Varying Scalar Fields", 
  journal =   "Journal on Parallel Computing",
  volume =    "33",
  number =    "6",
  pages =     "391--405",
  year =      "2007",
  keywords =  "vacet",
  url =       "http://www.sci.utah.edu/publications/bernardon07/parco07.pdf",
}

@TechReport{SCI:Ber2007b,
  author =    "F.F. Bernardon and L.K. Ha and S.P. Callahan and
              J.L.D. Comba and C.T. Silva", 
  title =     "Interactive Transfer Function Specification for
              Direct Volume Rendering of Disparate Volumes", 
  number =    "UUSCI-2007-007",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "volume rendering, transfer functions",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-007.pdf",
}

@Article{SCI:Ber2007c,
  author =    "M. Berzins",
  title =     "Is there Still More to Science than Computation?",
  journal =   "Computing in Science and Engineering",
  volume =    "9",
  number =    "1",
  pages =     "98--101",
  year =      "2007",
  keywords =  " scientific computing",
}

@Article{SCI:Ber80a,
  author =    "M. Berzins and P.M. Dew",
  title =     "A note on the extension of the Chebyshev method to
              quasi-linear parabolic {P.D.E}.s.", 
  journal =   "International Journal on Computer Mathematics",
  volume =    "8",
  pages =     "249--263",
  year =      "1980",
}

@Article{SCI:Ber81a,
  author =    "M. Berzins and P.M. Dew",
  title =     "A Generalized Chebyshev Method for Non-linear
              Parabolic Equations in One Space Variable", 
  journal =   "I.M.A. Journal on Numerical Analysis",
  volume =    "1",
  pages =     "469--487",
  year =      "1981",
}

@Article{SCI:Ber83a,
  author =    "M. Berzins and P.M. Dew and R.M. Furzeland",
  title =     "Software for time-dependent problems",
  journal =   "{P.D.E.} Software: Modules, Interfaces and
              Systems; Proc. of 1983 {IFIPS} Conference",
   year =      "1983",
  editor =    "B. Engquist and J. Rice",
  location =  "North Holland",
}

@Article{SCI:Ber84a,
  author =    "M. Berzins and T.F. Buckley and P.M. Dew",
  title =     "Path Pascal Simulation of Multi-Processor Lattice
              Architectures for Numerical Computations", 
  journal =   "Progress in the Use of Vector and Array
              processors",
   year =      "1984",
  editor =    "D.J. Paddon and J.D. Pryce",
  publisher = "Academic Press",
}

@Article{SCI:Ber86a,
  author =    "M. Berzins",
  title =     "A C1 Interpolant for Codes Based on Backward
              Differentiation Formulae", 
  journal =   "Applied Numerical Mathematics",
  volume =    "2",
  pages =     "109--118",
  year =      "1986",
}

@Article{SCI:Ber87a,
  author =    "M. Berzins and P.M. Dew",
  title =     "A Note on C0 Chebyshev Methods for Parabolic
              Equations", 
  journal =   "I.M.A. Journal of Numerical Analysis",
  volume =    "7",
  pages =     "15--37",
  year =      "1987",
}

@Article{SCI:Ber88b,
  author =    "M. Berzins",
  title =     "Global Error Estimation in the Method of Lines for
              Parabolic Equations", 
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "9",
  pages =     "687--703",
  year =      "1988",
}

@Article{SCI:Ber88c,
  author =    "M. Berzins and R. Brankin and I. Gladwell",
  title =     "Design of Stiff Integrators in the {N.A.G.}
              Library", 
  journal =   "Signum Bulletin",
  volume =    "23",
  number =    "2",
  pages =     "16--24",
  year =      "1988",
  month =     "April",
}

@Article{SCI:Ber89a,
  author =    "M. Berzins",
  title =     "Developments in {NAG} Library Software for
              Parabolic Equations", 
  journal =   "Scientific Software Systems",
  pages =     "59--72",
  year =      "1989",
  editor =    "J.C. Mason",
  publisher = "Chapman and Hall",
  month =     "July",
}

@Article{SCI:Ber89b,
  author =    "M. Berzins and P.M. Dew and R.M. Furzeland",
  title =     "Developing Software for Time-Dependent Problems
              Using the Method of Lines and Differential
              Algebraic Integrators", 
  journal =   "Applied Numerical Mathematics",
  volume =    "5",
  pages =     "375--397",
  year =      "1989",
}

@Article{SCI:Ber90a,
  author =    "M. Berzins and A.J. Preston and P.M. Dew",
  title =     "Integration Algorithms for the Dynamic Simulation
              of Production Processes", 
  journal =   "Proc of Third European Conference for Mathematics
              in Industry",
   pages =     "265--271",
  year =      "1990",
  editor =    "J. Manley et al.",
  publisher = "Kluwer Academic Publishers, Stuttgart.",
}

@Article{SCI:Ber91a,
  author =    "M. Berzins and P. Baehmann and J.E. Flaherty and
              J. Lawson", 
  title =     "Towards An Automated Finite Element Solver for
              Time-Dependent Fluid-Flow Problems", 
  journal =   "MAFELAP 90",
  pages =     "181--188",
  year =      "1991",
  editor =    "J.R. Whiteman",
  publisher = "Academic Press",
}

@Article{SCI:Ber91b,
  author =    "M. Berzins and P.M. Dew",
  title =     "Chebyshev Polynomial Software for
              Elliptic-Parabolic Systems of {P.D.E.}s", 
  journal =   "{A.C.M.} Transactions on Mathematical Software",
  volume =    "17",
  number =    "2",
  pages =     "178--206",
  year =      "1991",
  month =     "June",
}

@InProceedings{SCI:Ber92b,
  author =    "M. Berzins and A.J. Preston and P.M. Dew and L.E.
              Scales", 
  title =     "Towards Efficient {D.A.E.} Solvers for the
              Solution of Dynamic Simulation Problems", 
  booktitle = "Proc of {I.M.A.} 1989 {O.D.E.} Conference",
  pages =     "299--308",
  year =      "1992",
  editor =    "I. Gladwell, J. Cash and A. Iserles",
  publisher = "Oxford University Press",
  isbn =      "0-19-853659-3",
}

@Article{SCI:Ber92c,
  author =    "M. Berzins and R.M. Furzeland",
  title =     "An Adaptive Theta Method for the Solution of Stiff
              and Non-stiff Differential Equations", 
  journal =   "Applied Numerical Mathematics",
  volume =    "9",
  pages =     "1--19",
  year =      "1992",
}

@Article{SCI:Ber92d,
  author =    "M. Berzins and P.M. Dew and S. Hillen",
  title =     "Exploiting Parallelism for Adaptive {CFD}
              Software", 
  journal =   "Parallelogram",
  pages =     "14--16",
  year =      "1992",
  month =     "February",
}

@Article{SCI:Ber93a,
  author =    "M. Berzins and J.M. Ware",
  title =     "Towards An Automated Finite Element Solver for
              Time-Dependent Fluid-Flow Problems", 
  journal =   "MAFELAP 1993 Highlights",
  pages =     "299--306",
  year =      "1993",
  editor =    "J.R. Whiteman, John Wiley",
}

@InProceedings{SCI:Ber95a,
  author =    "M. Berzins and T.H.C. Childs and K.W. Dalgarno and
               G.R. Ryder and G. Stein", 
  title =     "Densification and Distortion in Selective Laser
              Sintering of Polycarbonate", 
  booktitle = "Proc 6th Symposium on Solid Free Form
              Fabrication",
   pages =     "196--203",
  year =      "1995",
  editor =    "J.W. Barlow et al.",
  location =  "University of Texas at Austin",
}

@Article{SCI:Ber95c,
  author =    "M. Berzins",
  title =     "Temporal Error Control in the Method of Lines for
              Convection Dominated Equations", 
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "16",
  pages =     "558--580",
  year =      "1995",
}

@Article{SCI:Ber95d,
  author =    "M. Berzins and J.M. Ware",
  title =     "Positive Cell Centered Finite Volume
              Discretisation Methods for Hyperbolic Equations on
              Irregular Meshes", 
  journal =   "Applied Numerical Mathematics",
  volume =    "16",
  pages =     "417--438",
  year =      "1995",
}

@Article{SCI:Ber96a,
  author =    "M. Berzins and J.M. Ware",
  title =     "Solving Convection and Convection Reaction
              Problems Using the M.O.L.", 
  journal =   "Applied Numerical Mathematics",
  volume =    "20",
  pages =     "83--99",
  year =      "1996",
}

@Article{SCI:Ber97b,
  author =    "M. Berzins and S.V. Pennington and P.R. Pratt and
              J.M. Ware", 
  title =     "{SPRINT2D} Software for Convection Dominated
              {PDE}s", 
  journal =   "Modern Software Tools in Scientific Computing",
  year =      "1997",
  editor =    "E. Arge, A.M. Bruaset and H.P. Langtangen",
  publisher = "Birkhauser Press",
}

@Article{SCI:Ber97d,
  author =    "M. Berzins and T.H.C. Childs and G.R. Ryder",
  title =     "The Selective Laser Sintering of Polycarbonate",
  journal =   "CIRP Annals",
  volume =    "45",
  number =    "1",
  pages =     "187--190",
  year =      "1997",
}

@Article{SCI:Ber98b,
  author =    "M. Berzins and P.J. Capon and P.K. Jimack",
  title =     "On Spatial Adaptivity and Interpolation When Using
              the Method of Lines", 
  journal =   "Applied Numerical Mathematics",
  volume =    "26",
  pages =     "117--134",
  year =      "1998",
  url =       "http://www.sci.utah.edu/publications/berzins98/berzins91spatial.pdf",
}

@Article{SCI:Ber98c,
  author =    "M. Berzins",
  title =     "A Solution-Based Triangular and Tetrahedral Mesh
              Quality Indicator", 
  journal =   "{SIAM} Journal on Scientific Computing",
  volume =    "19",
  pages =     "2051--2060",
  year =      "1998",
}

@Article{SCI:Ber98d,
  author =    "M. Berzins and R. Fairlie and S.V. Pennington and
              J.M. Ware and L.E. Scales", 
  title =     "{SPRINT2D}: Adaptive Software for {PDE}s",
  journal =   "{ACM} Transactions on Mathematical Software",
  volume =    "24",
  number =    "4",
  pages =     "475--499",
  year =      "1998",
  month =     "December",
  keywords =  "computational pde pdes computational partial
              differential equations", 
  url =       "http://www.sci.utah.edu/publications/berzins98/berzins98sprintd.pdf",
}

@InProceedings{SCI:Ber99b,
  author =    "M. Berzins and L.J.K Durbeck",
  title =     "Mesh Quality for Unstructured Mesh Riemann Solver
              Based Methods Applied to Hyperbolic {PDE}s with
              Source Terms", 
  booktitle = "Proceedings of Godunov Methods: Theory and
              Applications",
   year =      "1999",
  month =     "Oct",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, scirun, atmospherics
              weather meterology", 
  url =       "http://www.sci.utah.edu/publications/ldurbeck/godunov_99.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/godunov_99.ps",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/godunov_99.pdf",
}

@Article{SCI:Ber99c,
  author =    "M. Berzins and J. Nash and P. Selwood",
  title =     "Parallel Solution of Reacting Flow Problems using
              Unstructured Tetrahedral Meshes", 
  journal =   "Proceedings of 9th {SIAM} Parallel Processing for
              Scientific Computing",
   year =      "1999",
  location =  "Philadelphia, PA",
  isbn =      "0-89871-435-4",
}

@Article{SCI:Ber99d,
  author =    "M. Berzins",
  title =     "Mesh Quality - Geometry, Error Estimates or
              Both?", 
  journal =   "Engineering and Computers",
  volume =    "15",
  pages =     "236--247",
  year =      "1999",
}

@Article{SCI:Bet2006a,
  author =    "W. Bethel and C.R. Johnson and C.D. Hansen and
              S.G. Parker and A. Sanderson and C. Silva and X.
              Tricoche and V. Pascucci and H. Childs and J. Cohen
              and M. Duchaineau and D. Laney and P. Lindstrom and
              S. Ahern and J. Meredith and G. Ostrouchov and K.
              Joy and B. Hamann", 
  title =     "VACET: Proposed SciDAC2 Visualization and
              Analytics Center for Enabling Technologies", 
  journal =   "J. Phys.: Conf. Ser.",
  volume =    "46",
  pages =     "561--569",
  year =      "2006",
  keywords =  ", VACET, SciDAC",
  url =       "http://www.sci.utah.edu/publications/bethel06/jpconf6_46_078.pdf",
}

@Article{SCI:Bet2007a,
  author =    "E.W. Bethel and C.R. Johnson and K. Joy and S.
              Ahern and V. Pascucci and H. Childs and J. Cohen
              and M. Duchaineau and B. Hamann and C. Hansen and
              D. Laney and P. Lindstrom and J. Meredith and G.
              Ostrouchov and S.G. Parker and C.T. Silva and A.
              Sanderson and X. Tricoche", 
  title =     "SciDAC Visualization and Analytics Center for
              Enabling Technology", 
  journal =   "Journal of Physics",
  pages =     "(accepted)",
  year =      "2007",
  series =    "Conference Series",
  keywords =  "vacet",
  url =       "http://www.sci.utah.edu/publications/bethel07/VACET-Paper07-Final.pdf",
}

@Article{SCI:Bet2007b,
  author =    "E.W. Bethel and C.R. Johnson and C. Aragon and
              Prabhat and O. R{\"u}bel and G. Weber and V.
              Pascucci and H. Childs and P.-T. Bremer and B.
              Whitlock and S. Ahern and J. Meredith and G.
              Ostrouchov and K. Joy and B. Hamann and C. Garth
              and M. Cole and C. Hansen and S. Parker and A.
              Sanderson and C.T. Silva and X. Tricoche", 
  title =     "DOE’s SciDAC Visualization and Analytics Center
              for Enabling Technologies - Strategy for Petascale
              Visual Data Analysis Success", 
  title-url =
              "http://www.ctwatch.org/quarterly/articles/2007/11/does-scidac-visualization-and-analytics-center-for-enabling-technologies-strategy-for-petascale-visual-data-analysis-success/",
              
  journal =   "CTWatch Quarterly",
  volume =    "3",
  number =    "4",
  year =      "2007",
}

@TechReport{SCI:Big2006a,
  author =    "J. Bigler and A. Stephens and S.G. Parker",
  title =     "Design for Parallel Interactive Ray Tracing
              Systems", 
  number =    "UUSCI-2006-027",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-027.pdf",
}

@InProceedings{SCI:Big2006b,
  author =    "J. Bigler and J. Guilkey and C. Gribble and C.D.
              Hansen and S.G. Parker", 
  title =     "A Case Study: Visualizing Material Point Method
              Data", 
  booktitle = "Proceedings of Euro Vis 2006",
  pages =     "299--306, 377",
  year =      "2006",
  month =     "May",
  keywords =  "mpm material point method, csafe c-safe",
  url =       "http://www.sci.utah.edu/publications/bigler06/mpmvis-electronic.pdf",
}

@InProceedings{SCI:Big2006c,
  author =    "J. Bigler and A. Stephens and S.G. Parker",
  title =     "Design for Parallel Interactive Ray Tracing
              Systems", 
  booktitle = "Proceedings of The {IEEE} {S}ymposium on
              {I}nteractive {R}ay {T}racing",
   pages =     "187--196",
  year =      "2006",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter", 
  url =       "http://www.sci.utah.edu/publications/bigler06/manta-rt06.pdf",
}

@Misc{SCI:BioFEM,
  year =      "2008",
  note =      "BioFEM: A SCIRun PowerApp that computes the
              electric field in a volume produced by a set of
              dipoles. Scientific Computing and Imaging Institute
              (SCI), Download from:
              http://www.sci.utah.edu/cibc/software/", 
  keywords =  "biofem, ncrr",
  url =       "http://www.sci.utah.edu/cibc/software/index.html",
}

@Misc{SCI:BioImg,
  year =      "2008",
  note =      "BioImage: A SCIRun Power App for processing and
              visualizing medical image volumes. Scientific
              Computing and Imaging Institute (SCI), Download
              from:
              http://www.sci.utah.edu/cibc/software/index.html", 
  keywords =  "bioimage, ncrr",
  url =       "http://www.sci.utah.edu/cibc/software/index.html",
}

@Misc{SCI:BioPSE,
  year =      "2008",
  note =      "BioPSE: Problem Solving Environment for modeling,
              simulation, image processing, and visualization for
              biomedical computing applications. Scientific
              Computing and Imaging Institute (SCI), Download
              from: http://www.sci.utah.edu/cibc/software/", 
  keywords =  "BioPSE, biopse, ncrr",
  url =       "http://www.sci.utah.edu/cibc/software/index.html",
}

@Misc{SCI:BioTen,
  year =      "2008",
  note =      "BioTensor: A SCIRun Power App for processing and
              visualizing diffusion tensor images. Scientific
              Computing and Imaging Institute (SCI), Download
              from: http://www.sci.utah.edu/cibc/software/", 
  keywords =  "biotensor, ncrr",
  url =       "http://www.sci.utah.edu/cibc/software/index.html",
}

@Article{SCI:Bon2005a,
  author =    "C. Bonifasi-Lista and S.P. Lake and M. Small and
              J.A. Weiss", 
  title =     "Viscoelastic Properties of the Human Medial
              Collateral Ligament Under Longitudinal, Transverse
              and Shear Loading", 
  journal =   j-OR,
  volume =    "23",
  number =    "1",
  pages =     "67--76",
  year =      "2005",
  month =     "January",
  keywords =  "computational mechanics, computational
              biomechanics, angiogenesis", 
  url =       "http://www.sci.utah.edu/publications/lista05/bonifasi_jor_2005.pdf",
}

@TechReport{SCI:Bou2006a,
  author =    "S. Boulos and D. Edwards and J.D. Lacewell and
              J.M. Kniss and J. Kautz and P. Shirley and I.
              Wald", 
  title =     "Interactive Distribution Ray Tracing",
  number =    "UUSCI-2006-022",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt, rtcenter", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-022.pdf",
}

@TechReport{SCI:Bou2006b,
  author =    "S. Boulos and I. Wald and P. Shirley",
  title =     "Geometric and Arithmetic Culling Methods for
              Entire Ray Packets", 
  number =    "UUCS-06-010",
  year =      "2006",
  institution = "School of Computing, University of Utah",
  type =      "School of Computing Technical Report",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/boulos06/UUCS-06-10.pdf",
}

@InProceedings{SCI:Bou2007a,
  author =    "S. Boulos and D. Edwards and J.D. Lacewell and J.
              Kniss and J. Kautz and I. Wald and P. Shirley", 
  title =     "Packet-based Whitted and Distribution Ray
              Tracing", 
  booktitle = "Proceedings of Graphics Interface 2007",
  year =      "2007",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/boulos07/packetdrt.pdf",
}

@InProceedings{SCI:Bow1998a,
  author =    "A.E. Bowden and R.D. Rabbitt and J.A. Weiss",
  title =     "Anatomical Registration and Segmentation by
              Warping Template Finite Element Models", 
  booktitle = "Proc. {SPIE} (Laser-Tissue Interaction IX)",
  volume =    "3254",
  pages =     "469--476",
  year =      "1998",
  url =       "http://www.sci.utah.edu/publications/bowden98/spie98_anton.pdf",
}

@InProceedings{SCI:Bre2000a,
  author =    "J.D. Brederson and M. Ikits and C.R. Johnson and
              C.D. Hansen and J.M. Hollerbach", 
  title =     "The Visual Haptic Workbench",
  booktitle = "Proceedings of the Fifth PHANToM Users Group
              Workshop",
   pages =     "46--49",
  year =      "2000",
  month =     "October",
  keywords =  "vr virtual reality haptics, uve, scientific
              visualization, haptics", 
  url =       "http://www.sci.utah.edu/publications/jdb00/pug00.pdf",
  url =       "http://www.sci.utah.edu/publications/jdb00/pug00.ps.gz",
  url =       "http://www.sci.utah.edu/publications/jdb00/pug00.ps",
}

@InProceedings{SCI:Bre2001a,
  author =    "J.D. Brederson and M. Ikits and C. Johnson and C.
              Hansen", 
  title =     "A Prototype System For Synergistic Data Display",
  booktitle = "{IEEE} Virtual Reality 2001",
  year =      "2001",
  keywords =  "vector field methods, visual haptic workbench,
              scientific visualization", 
  url =       "http://www.sci.utah.edu/publications/jdb01/vr01-wk.ps",
  url =       "http://www.sci.utah.edu/publications/jdb01/vr01-wk.ps.gz",
  url =       "http://www.sci.utah.edu/publications/jdb01/vr01-wk.pdf",
}

@Article{SCI:Bre2001b,
  author =    "D. Breen and R. Whitaker",
  title =     "A Level-Set Approach for the Metamorphosis of
              Solid Models", 
  journal =   j-TVCG,
  volume =    "7",
  number =    "2",
  pages =     "173--192",
  year =      "2001",
  keywords =  "ip image processing signal processing,
              segmentation, imaging, level-set methods,
              level-sets", 
  url =       "http://www.sci.utah.edu/publications/breen01/breen_whitaker_2001.pdf",
}

@TechReport{SCI:Bre99,
  author =    "J.D. Brederson",
  title =     "The I3Stick: An Inexpensive, Immersive,
              Interaction Device", 
  number =    "UUCS-99-014",
  year =      "1999",
  institution = "University of Utah",
  type =      "School of Computing Technical Report",
  month =     "November",
  keywords =  "vector field methods, vr virtual reality haptics",
  url =       "http://www.sci.utah.edu/publications/jdb99/UUCS-99-016.ps",
  url =       "http://www.sci.utah.edu/publications/jdb99/UUCS-99-016.ps.gz",
  url =       "http://www.sci.utah.edu/publications/jdb99/UUCS-99-016.pdf",
}

@Article{SCI:Bro1999a,
  author =    "D.H. Brooks and G.F. Ahmad and R.S. MacLeod and
              G.M. Maratos", 
  title =     "Inverse Electrocardiography by Simultaneous
              Imposition of Multiple Constraints", 
  journal =   j-BME,
  volume =    "46",
  number =    "1",
  pages =     "3--18",
  year =      "1999",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, cardiac heart, ncrr",
              
  url =       "http://www.sci.utah.edu/publications/brooks99/brooks-tmbe-1999.pdf",
}

@Misc{SCI:Bro2004a,
  author =    "S.R. Browd and L. McAninch and G.M. Jones and D.L.
              Brockmeyer", 
  title =     "CT Image Segmentation and 3-D Reconstruction for
              Evaluation of Occipital-Cervical Instability in
              Children", 
  year =      "2004",
  howpublished = "presented at AANS/CNS Section on Pediatric
              Neurological Surgery Annual Meeting, December 8-11,
              2004 San Francisco, CA.", 
  keywords =  "ip image processing signal processing,
              segmentation, Occipital-Cervical Instability, CT,
              Down Syndrome", 
  url =       "http://www.sci.utah.edu/publications/browd04/CTseg_abstract.txt",
}

@InProceedings{SCI:Bro2004b,
  author =    "D.H. Brooks and A. Ghodrati and Y. Zhang and G.
              Tadmor and R.S. MacLeod", 
  title =     "Inverse Electrocardiography in the Framework of
              Dynamic Imaging Problems", 
  booktitle = c-EMBS2004,
  pages =     "3565--3568",
  year =      "2004",
  month =     "September",
  location =  "San Francisco, CA",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions, cardiac heart", 
  url =       "http://www.sci.utah.edu/publications/brooks04/EMBS04_DanaBrooks.pdf",
}

@Article{SCI:Bro2006a,
  author =    "S. Browd and L.J. Healy and G. Dobie and J.T.
              Johnson III and G.M. Jones and L.F. Rodriguez and
              D.L. Brockmeyer", 
  title =     "Morphometric and Qualitative Analysis of
              Congenital Occipitocervical Instability in
              Children: Implications for Down Syndrome Patients",
              
  journal =   "Journal of Pediatric Neurosurgery",
  pages =     "(accepted)",
  year =      "2006",
}

@InProceedings{SCI:Bro2007a,
  author =    "D.H. Brooks and A. Keely and A. Ghodrati and G.
              Tadmor and R.S. MacLeod", 
  title =     "Some Spatio-Temporal Approaches to Inverse
              Electrocardiography", 
  booktitle = "Proc. Asilomar Conf. on Signals, Systems, and
              Computers",
   year =      "2007",
  month =     "November",
  location =  "Pacific Grove, CA",
  keywords =  "inverse eeg, ncrr, cibc",
}

@Article{SCI:Bro92a,
  author =    "K.W. Brodlie and M. Berzins and P.M. Dew and A.
              Poon and H. Wright", 
  title =     "Visualization and its Use in Scientific
              Computation", 
  journal =   "Programming Environments for High-Level Scientific
              Problem Solving",
   pages =     "293--303",
  year =      "1992",
  publisher = "Elsevier",
}

@InProceedings{SCI:Bue2008a,
  author =    "K. Buerger and P. Kondratieva and J. Krueger and
              R. Westermann", 
  title =     "Importance-Driven Particle Techniques for Flow
              Visualization", 
  booktitle = "Proceedings of {IEEE} {VGTC} PacificVis 2008",
  pages =     "(accepted)",
  year =      "2008",
  keywords =  "particle systems, flow visualization, vacet",
  url =       "http://www.sci.utah.edu/publications/buerger08/pvis08.pdf",
}

@Article{SCI:Bul2004a,
  author =    "E. Bullitt and M.G. Ewend and S. Aylward and W.
              Lin and G. Gerig G and S. Joshi and I. Jung and K.
              Muller and J. Smith", 
  title =     "Abnormal Vessel Tortuosity as a Marker of
              Treatment Response of Malignant Gliomas:
              Preliminary Report", 
  journal =   "Technol Cancer Res Treat",
  volume =    "3",
  number =    "6",
  pages =     "577--584",
  year =      "2004",
  month =     "December",
  url =       "http://www.sci.utah.edu/publications/bullitt04/B_TCRT_3_6_577.pdf",
}

@Article{SCI:Bul2005a,
  author =    "E. Bullitt and D. Zeng and G. Gerig and S. Aylward
              and S. Joshi and J.K. Smith and W. Lin and M.
              Ewend", 
  title =     "Vessel Tortuosity and Brain Tumor Malignancy: A
              Blinded Study", 
  journal =   "Acad Radiol",
  volume =    "12",
  number =    "10",
  pages =     "1232--1240",
  year =      "2005",
  month =     "October",
}

@InProceedings{SCI:But2001a,
  author =    "C.R. Butson",
  title =     "From Action Potentials to Surface Potentials",
  booktitle = "Multilevel Neuronal Modeling Workshop",
  year =      "2001",
  month =     "May",
  location =  "Edinburgh, Scotland",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              forward simulation, scalar field methods, bipolar
              stimulation, neuron potential simulation, ncrr", 
}

@InProceedings{SCI:But2001b,
  author =    "C.R. Butson and G.A. Clark",
  title =     "Random Noise Confers a Paradoxical Improvement in
              the Ability of a Simulated Hermissenda
              Photoreceptor Network to Encode Light Intensity", 
  booktitle = "Society for Neuroscience Conference",
  year =      "2001",
  month =     "November",
  keywords =  "bipolar stimulation, neuron potential simulation",
}

@InProceedings{SCI:But2007a,
  author =    "L. Butler and A. Stephens",
  title =     "Bullet Ray Vision",
  booktitle = "Proceedings of the IEEE Symposium on Interactive
              Ray Tracing",
   pages =     "(accepted)",
  year =      "2007",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, rtcenter", 
  url =       "http://www.sci.utah.edu/publications/butler07/BulletRayVision.pdf",
}

@TechReport{SCI:Cal2004a,
  author =    "S.P. Callahan and M. Ikits and J.L.D. Comba and
              C.T. Silva", 
  title =     "Hardware-Assisted Visibility Sorting for
              Unstructured Volume Rendering", 
  number =    "UUSCI-2004-003",
  year =      "2004",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2004-003.pdf",
}

@Article{SCI:Cal2005a,
  author =    "S.P. Callahan and M. Ikits and J.L.D. Comba and
              C.T. Silva", 
  title =     "Hardware-Assisted Visibility Ordering for
              Unstructured Volume Rendering", 
  journal =   j-TVCG,
  volume =    "11",
  number =    "3",
  pages =     "285--295",
  year =      "2005",
  publisher = "IEEE Educational Activities Department",
  issn =      "1077-2626",
  keywords =  "scalar field methods, volume rendering, visibility
              ordering, GPU, tetrahedral meshes, unstructured
              volume rendering", 
  url =       "http://www.sci.utah.edu/publications/stevec05/HAVS.pdf",
  related-images = "757, 761, 760, 756, 758, 759",
}

@InProceedings{SCI:Cal2005b,
  author =    "F. Calderero and A. Ghodrati and D.H. Brooks and
              G. Tadmor and R.S. MacLeod", 
  title =     "A Method to Reconstruct Activation Wavefronts
              Without Isotropy Assumptions Using a Level Sets
              Approach", 
  booktitle = "Functional Imaging and Modeling of the Heart:
              Third International Workshop (FIMH 2005)",
   pages =     "195",
  year =      "2005",
  location =  "Barcelona, June 2-4",
  keywords =  "ncrr",
}

@InProceedings{SCI:Cal2005c,
  author =    "S. P. Callahan and J. L. D. Comba and P. Shirley
              and C. T. Silva", 
  title =     "Interactive Rendering of Large Unstructured Grids
              Using Dynamic Level-of-Detail", 
  booktitle = c-VIS2005,
  pages =     "26",
  year =      "2005",
  keywords =  "interactive rt distributed interactive ray tracing
              dirt, interactive volume rendering, multiresolution
              meshes, level-of-detail, tetrahedral meshes", 
  url =       "http://www.sci.utah.edu/publications/stevec05/dynamic_lod.pdf",
}

@MastersThesis{SCI:Cal2005d,
  author =    "S.P. Callahan",
  title =     "The k-Buffer and its Applications to Volume
              Rendering", 
  year =      "2005",
  school =    "School of Computing, University of Utah",
  note =      "Masters Thesis",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/stevec05/thesis.pdf",
}

@InProceedings{SCI:Cal2006a,
  author =    "S.P. Callahan and J. Freire and E. Santos and C.E.
              Scheidegger and C.T. Silva and H.T. Vo", 
  title =     "Managing the Evolution of Dataflows with
              VisTrails", 
  booktitle = "Proceedings of The 2006 IEEE Workshop on Workflow
              and Data Flow for Scientific Applications (SciFlow
              2006)",
   year =      "2006",
  keywords =  "vistrails, ",
  url =       "http://www.sci.utah.edu/publications/stevec06/sciflow2006.pdf",
}

@InProceedings{SCI:Cal2006b,
  author =    "S.P. Callahan and J. Freire and E. Santos and C.
              Scheidegger and C. Silva and H. Vo", 
  title =     "VisTrails: Visualization Meets Data Management",
  booktitle = "Proceedings of the 2006 ACM SIGMOD/PODS
              Conference",
   pages =     "(accepted)",
  year =      "2006",
  keywords =  ", vistrails",
  url =       "http://www.sci.utah.edu/publications/stevec06/vt-sigmod.pdf",
}

@TechReport{SCI:Cal2006c,
  author =    "S.P. Callahan and J. Freire and E. Santos and C.E.
              Scheidegger and C.T. Silva and H.T. Vo", 
  title =     "Using Provenance to Streamline Data Exploration
              through Visualization", 
  number =    "UUSCI-2006-016",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "VisTrails",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-016.pdf",
}

@TechReport{SCI:Cal2006d,
  author =    "S.P. Callahan and L. Bavoil and V. Pascucci and
              C.T. Silva", 
  title =     "Progressive Volume Rendering of Large Unstructured
              Grids", 
  number =    "UUSCI-2006-019",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "volume rendering, rtrt real-time ray tracing,
              scientific visualization", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-019.pdf",
}

@InProceedings{SCI:Cal2006e,
  author =    "S.P. Callahan and L. Bavoil and V. Pascucci and
              C.T. Silva", 
  title =     "Progressive Volume Rendering of Large Unstructured
              Grids", 
  booktitle = "IEEE Transactions on Visualization and Computer
              Graphics (Proceedings of Visualization/Information
              Visualization 2006)",
   volume =    "12",
  number =    "5",
  pages =     "(to appear)",
  year =      "2006",
  note =      "Updated version of UUSCI-2006-019.",
  keywords =  "volume rendering",
  url =       "http://www.sci.utah.edu/publications/stevec06/pro-havs.pdf",
}

@TechReport{SCI:Cal2007a,
  author =    "M. Callahan and M.J. Cole and J.F. Shepherd and J.
              Stinstra and C.R. Johnson", 
  title =     "BioMesh3D: A Meshing Pipeline for Biomedical
              Models", 
  number =    "UUSCI-2007-009",
  year =      "2007",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "ncrr, biomesh3d",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2007-009.pdf",
}

@Article{SCI:Cal2007b,
  author =    "M. Callahan and M.J. Cole and J.F. Shepherd and
              J.G. Stinstra and C.R. Johnson", 
  title =     "A Meshing Pipeline for Biomedical Computing",
  journal =   "Engineering with Computers",
  pages =     "(in press)",
  year =      "2007",
  series =    "Special Issue on Computational Bioengineering",
  url =       "http://www.sci.utah.edu/publications/callahan07/Meshing-Pipeline07.pdf",
}

@Article{SCI:Cal2007c,
  author =    "S.P. Callahan and J.H. Callahan and C.E.
              Scheidegger and and C.T. Silva", 
  title =     "Direct Volume Rendering: A 3D Plotting Technique
              for Scientific Data", 
  journal =   "IEEE Computing in Science and Engineering",
  pages =     "(accepted)",
  year =      "2007",
}

@Article{SCI:Cal2008a,
  author =    "S.P. Callahan and J.H. Callahan and C.E.
              Scheidegger and C. Silva", 
  title =     "Direct Volume Rendering: A 3D Plotting Technique
              for Scientific Data", 
  journal =   "Computing in Science and Engineering",
  volume =    "10",
  number =    "1",
  pages =     "88--92",
  year =      "2008",
}

@TechReport{SCI:Car2006a,
  author =    "C.D. Carbonera and J.F. Shepherd",
  title =     "On the Existence of a Perfect Matching for
              4-regular Graphs derived from Quadrilateral
              Meshes", 
  number =    "UUSCI-2006-021",
  year =      "2006",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2006-021.pdf",
}

@InProceedings{SCI:Car2006b,
  author =    "C.D. Carbonera and J.F. Shepherd",
  title =     "A Constructive Approach to Constrained Hexahedral
              Mesh Generation", 
  booktitle = "Proceedings of the 15th International Meshing
              Roundtable",
   year =      "2006",
  month =     "September",
  location =  "Birmingham, AL",
  keywords =  ", meshing, open problem 27 ",
  url =       "http://www.sci.utah.edu/publications/carbonera06/carbonera.pdf",
}

@Article{SCI:Cas2006a,
  author =    "C.J. Cascio and M. Styner and R.G. Smith and M.D.
              Poe and G. Gerig and H.C. Hazlett and M. Jomier and
              R. Bammer and J. Piven", 
  title =     "Tractography-Based Segmentation of the Corpus
              Callosum Reveals a Reduced Relationship to Cortical
              White Matter Volume in Young Children with
              Developmental Delay", 
  journal =   "Am J Psychiatry",
  volume =    "163",
  pages =     "2157--2163",
  year =      "2006",
  month =     "December",
}

@Article{SCI:Cas2007a,
  author =    "C.J. Cascio and G. Gerig and J. Piven",
  title =     "Diffusion Tensor Imaging: Application to the Study
              of the Developing Brain", 
  journal =   "Journal of the American Academy of Child and
              Adolescent Psychiatry JAACAP",
   year =      "2006",
  month =     "August",
}

@InProceedings{SCI:Cat2003a,
  author =    "J. Cates and R. Whitaker",
  title =     "Interactive Medical Image Segmentation Using the
              Insight Toolkit", 
  booktitle = c-RSNA2003,
  year =      "2003",
  month =     "November",
  keywords =  "ip image processing signal processing,
              segmentation, insight itk", 
}

@TechReport{SCI:Cat2004a,
  author =    "J. Cates and A. Lefohn and R. Whitaker",
  title =     "GIST: an Interactive, GPU-Based Level Set
              Segmentation Tool for 3D Medical Images", 
  number =    "UUCS-04-007",
  year =      "2004",
  institution = "University of Utah School of Computing",
  keywords =  "ip image processing signal processing,
              segmentation", 
  url =       "http://www.sci.utah.edu/publications/cates04/Cates_MedIA2004Tech.pdf",
}

@TechReport{SCI:Cat2004b,
  author =    "J. Cates and R. Whitaker and G.M. Jones",
  title =     "Case Study: An Evaluation of User-Assisted
              Hierarchical Watershed Segmentation", 
  number =    "UUCS-04-006",
  year =      "2004",
  institution = "University of Utah School of Computing",
  keywords =  "ip image processing signal processing,
              segmentation, watershed, ncrr", 
  url =       "http://www.sci.utah.edu/publications/cates04/UUCS-04-006.pdf",
}

@Article{SCI:Cat2004c,
  author =    "J. Cates and A. Lefohn and R. Whitaker",
  title =     "GIST: An Interactive, GPU-Based Level Set
              Segmentation Tool for 3D Medical Images", 
  journal =   "Medical Image Analysis",
  volume =    "8",
  number =    "3",
  pages =     "217--231",
  year =      "2004",
  month =     "September",
  keywords =  "ip image processing signal processing,
              segmentation, ncrr", 
}

@InProceedings{SCI:Cat2006a,
  author =    "J. Cates and M. Meyer and P.T. Fletcher and R.T.
              Witaker", 
  title =     "Entropy-Based Particle Systems for Shape
              Correspondence", 
  booktitle = "Workshop on Mathematical Foundations of
              Computational Anatomy, MICCAI 2006",
   pages =     "90--99",
  year =      "2006",
  month =     "October",
  keywords =  "particle systems, ,  particle systems",
  url =       "http://www.sci.utah.edu/publications/cates06/Cates-miccai2006.pdf",
}

@InProceedings{SCI:Cat2006b,
  author =    "J. Cates and D. Weinsten and M. Davis",
  title =     "The Center for Integrative Biomedical Computing:
              Advancing Biomedical Science with Open Source", 
  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging (ISBI) 2006",
   year =      "2006",
  keywords =  "ncrr, open source software, biomedical",
  url =       "http://www.sci.utah.edu/publications/cates06/Cates-isbi2006.pdf",
}

@InProceedings{SCI:Cat2007a,
  author =    "J. Cates and P.T. Fletcher and M. Styner and M.
              Shenton and R. Whitaker", 
  title =     "Shape Modeling and Analysis with Entropy-Based
              Particle Systems", 
  booktitle = "Proceedings of Information Processing in Medical
              Imaging (IPMI) 2007",
   pages =     "333--345",
  year =      "2007",
  series =    "LNCS 4584",
}

@InProceedings{SCI:Cha2004a,
  author =    "E. Chaney and S. Pizer and S. Joshi and R.
              Broadhurst and T. Fletcher and G. Gash and Q. Han
              and J.Y. Jeong and C. Lu and D. Merck and J. Stough
              and G. Tracton and M.D.J. Bechtel and J. Rosenman
              and Y.Y. Chi and K. Muller", 
  title =     "Automatic Male Pelvis Segmentation from CT Images
              via Statistically Trained Multi-Object Deformable
              M-rep Models", 
  booktitle = "Presented at American Society for Therapeutic
              Radiology and Oncology (ASTRO)",
   year =      "2004",
  url =       "http://www.sci.utah.edu/publications/chaney04/ASTRO04_Chaney.pdf",
}

@Article{SCI:Che2002a,
  author =    "Z. Chen and S. Pizer and E. Chaney and S. Joshi",
  title =     "Medical Image Synthesis via Monte Carlo
              Simulation", 
  journal =   "Medical Image Computing and Computer-Assisted
              Intervention (MICCAI)",
   pages =     "347--354",
  year =      "2002",
  editor =    "T Dohi and R Kikinis",
  url =       "http://www.sci.utah.edu/publications/chen02/MICCAI02-chenzj.pdf",
}

@Article{SCI:Che2004a,
  author =    "A.B. Cheryauka and J.N. Lee and A.A. Samsonov and
              M. Defrise and G.T. Gullberg", 
  title =     "{MRI} Diffusion Tensor Reconstruction with
              {PROPELLER} Data Acquisition", 
  journal =   j-JMRI,
  volume =    "22",
  number =    "2",
  pages =     "139--148",
  year =      "2004",
  keywords =  "tensor field methods, diffusion tensor imaging, ip
              image processing signal processing, bisti,
              PROPELLER, Imaging, propeller, imaging, ncrr", 
  url =       "http://www.sci.utah.edu/publications/cheryauka04/propeller.pdf",
}

@Article{SCI:Chi2007a,
  author =    "D. Chisnall and M. Chen and C. Hansen",
  title =     "Ray-Driven Dynamic Working Set Rendering for
              Complex Volume Scene Graphs Involving Large Point
              Clouds", 
  journal =   "The Visual Computer",
  volume =    "23",
  number =    "3",
  pages =     "167--179",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/chisnall07/Chisnall_VisualComputer2007.pdf",
}

@Article{SCI:Chi99a,
  author =    "T.H.C. Childs and M. Berzins and G.R. Ryder and A.
              Towtoni", 
  title =     "Selective Laser Sintering of an Amorphous
              Polymer-Simulations and Experiments", 
  journal =   "Proceedings of the Institution of Mechanical
              Engineers Part B: Journal of Engineering
              Manufacture",
   volume =    "213",
  number =    "B4",
  pages =     "333--349",
  year =      "1999",
}

@Article{SCI:Chr1995a,
  author =    "G.E. Christensen and R.D. Rabbitt and M.I. Miller
              and S.C. Joshi and U. Grenander and T.A. Coogan", 
  title =     "Topological Properties of Smooth Anatomic Maps",
  journal =   "Information Processing in Medical Imaging",
  pages =     "101--112",
  year =      "1995",
}

@Article{SCI:Chr1997a,
  author =    "G.E. Christensen and S.C. Joshi SC and Miller M",
  title =     "Volumetric Transformation of Brain Anatomy",
  journal =   "IEEE Trans Med Imaging",
  volume =    "16",
  number =    "6",
  pages =     "864--877",
  year =      "1997",
  month =     "December",
}

@Article{SCI:Chr1997b,
  author =    "G.E. Christensen and S.C. Joshi and M.I. Miller",
  title =     "Volumetric Transformation of Brain Anatomy",
  journal =   "IEEE Transactions on Medical Imaging",
  volume =    "16",
  number =    "6",
  pages =     "864--877",
  year =      "1997",
  month =     "December",
}

@Misc{SCI:CIBCData,
  year =      "2008",
  note =      "Data Sets: NCRR Center for Integrative Biomedical
              Computing (CIBC) data set archive. Download from:
              http://www.sci.utah.edu/cibc/software/login_datasets.html",
              
  keywords =  "datasets, ncrr",
  url =       "http://www.sci.utah.edu/cibc/software/login_datasets.html",
}

@InProceedings{SCI:Col2003a,
  author =    "M. Cole and S. Parker",
  title =     "Dynamic Compilation of C++ Template Code",
  booktitle = "Scientific Programming",
  volume =    "11",
  pages =     "321--327",
  year =      "2003",
  publisher = "IOS Press",
  keywords =  "ncrr, scirun, problem solving environments",
  url =       "http://www.sci.utah.edu/publications/mcole01/dyn.pdf",
}

@InProceedings{SCI:Col2004a,
  author =    "M. Cole and F.B. Sachse and D.M. Weinstein and
              S.G. Parker and R.M. Kirby", 
  title =     "A Software Framework for Solving Problems of
              Bioelectricity Applying High-Order Finite
              Elements", 
  booktitle = c-EMBS2004,
  volume =    "1",
  pages =     "821--824",
  year =      "2004",
  keywords =  "ncrr, forward problems inverse problems forward
              simulation inverse solutions, finite elements,
              biopse", 
  url =       "http://www.sci.utah.edu/publications/mjc04/Article3.pdf",
}

@TechReport{SCI:Com2004a,
  author =    "Joao L.D. Comba and Joseph S.B. Mitchell and 
              Claudio T. Silva", 
  title =     "On the Convexification of Unstructured Grids From
              A Scientific Visualization Perspective", 
  number =    "UUSCI-2004-004",
  year =      "2004",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "unstructured grids, convexification, Delaunay
              triangulations, binary space, partitioning trees,
              delaunay triangulations", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-2004-004.pdf",
}

@InProceedings{SCI:Coo1996a,
  author =    "M.L. Cooper and A.D. Lanterman and S.C. Joshi and
              M.I. Miller", 
  title =     "Representing The Variation of Thermodynamic State
              Via Principal Components Analysis", 
  booktitle = "Proceedings of the Third Workshop On Conventional
              Weapon ATR",
   pages =     "481--490",
  year =      "1996",
  month =     "November",
}

@Article{SCI:Cor2001a,
  author =    "N.M. Cordaro and J.A. Weiss and J.A. Szivek",
  title =     "Strain Transfer Between a CPC Coated Strain Gauge
              and Cortical Bone During Bending", 
  journal =   "Journal of Biomedical Materials Research",
  volume =    "58",
  number =    "2",
  pages =     "147--155",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/cordaro01/jbmr_final.pdf",
}

@Article{SCI:Cor2003a,
  author =    "A. Corlan and R.S. MacLeod and L.D. Ambroggi",
  title =     "Low Variability of Autocorrelation Maps with
              Intrathoracic Heart Position", 
  journal =   j-IJBEM,
  volume =    "5",
  number =    "1",
  pages =     "139--140",
  year =      "2003",
  keywords =  "cardiac heart, ncrr",
  url =       "http://www.sci.utah.edu/publications/corlan03/ICE03-Corlan.pdf",
}

@InProceedings{SCI:Cor2005a,
  author =    "I. Corouge and P.T. Fletcher and S. Joshi and J.H.
              Gilmore and G. Gerig", 
  title =     "Fiber Tract-Oriented Statistics for Quantitative
              Diffusion Tensor MRI Analysis", 
  booktitle = "Med Image Comput Comput Assist Interv Int Conf Med
              Image Comput Comput Assist Interv",
   volume =    "8 (Pt. 1)",
  pages =     "131--139",
  year =      "2005",
  url =       "http://www.sci.utah.edu/publications/corouge05/MICCAI05_Corouge_DT.pdf",
}

@Article{SCI:Cor2006a,
  author =    "I. Corouge and P.T. Fletcher and S. Joshi and S.
              Gouttard and G. Gerig", 
  title =     "Fiber Tract-Oriented Statistics for Quantitative
              Diffusion Tensor MRI Analysis", 
  journal =   "Medical Image Analysis",
  volume =    "10",
  number =    "5",
  pages =     "786--798",
  year =      "2006",
  url =       "http://www.sci.utah.edu/publications/corouge06/Corouge_MedIA2006a.pdf",
}

@Article{SCI:Cre97a,
  author =    "D.J. Creasey and D.E. Heard and M. Pilling and
              B.J. Whitaker and M. Berzins and R. Fairlie", 
  title =     "Visualisation of a Supersonic Free-Jet Expansion
              Using Laser-Induced Fluorescence Spectroscopy:
              Application to the Measurement of Rate Constants at
              Ultralow Temperatures", 
  journal =   "Applied Physics B: Lasers and Optics",
  volume =    "65",
  pages =     "375--391",
  year =      "1997",
}

@InProceedings{SCI:Cse1998a,
  author =    "J.C. Csernansky and S. Joshi and L. Wang and M.
              Gado and J.P. Miller and U. Grenander and M.I.
              Miller", 
  title =     "Hippocampal Morphometry in Schizophrenia by High
              Dimensional Brain Mapping", 
  booktitle = "Proceedings of the National Academy of Science",
  volume =    "95",
  pages =     "11406--11411",
  year =      "1998",
  month =     "September",
}

@Article{SCI:Cse2000a,
  author =    "J.G. Csernansky and L. Wang and S. Joshi and J.P.
              Miller and M. Gado and D. Kido and D. McKeel and
              J.C. Morris and M. Miller", 
  title =     "Early DAT is Distinguished from Aging by
              High-Dimensional Mapping of the Hippocampus.
              Dementia of the Alzheimer Type", 
  journal =   "Neurology",
  volume =    "55",
  number =    "11",
  pages =     "1636--1643",
  year =      "2000",
  month =     "December 12",
}

@Article{SCI:Cse2004a,
  author =    "J.G. Csernansky and L. Wang and S.C. Joshi and
              J.T. Ratnanather and M. Miller", 
  title =     "Computational Anatomy and Neuropsychiatric
              Disease: Probabilistic Assessment of Variation and
              Statistical Inference of Group Difference,
              Hemispheric Asymmetry, and Time-Dependent Change", 
  journal =   "Neuroimage",
  volume =    "23 Suppl. 1",
  pages =     "S56--S68",
  year =      "2004",
}

@Article{SCI:Cur2007a,
  author =    "S. Curtis and R.M. Kirby and J.K. Ryan and C.-W.
              Shu", 
  title =     "Post-Processing for the Discontinuous Galerkin
              Method Over Non-Uniform Meshes", 
  journal =   "SIAM Journal of Scientific Computing",
  pages =     "(accepted)",
  year =      "2007",
}

@InProceedings{SCI:Dal2005a,
  author =    "M.S. Dalton and B.J. Ellis and T.J. Lujan and J.A.
              Weiss", 
  title =     "MCL Insertion Site and Contact Forces in the
              ACL-Deficient Knee", 
  booktitle = "Proceedings, 51th Annual Orthopaedic Research
              Society Meeting",
   volume =    "30",
  pages =     "814",
  year =      "2005",
  keywords =  "computational mechanics, computational
              biomechanics", 
  url =       "http://www.sci.utah.edu/publications/dalton05/dalton_ORS_05.pdf",
}

@InProceedings{SCI:Dam2003b,
  author =    "K. Damevski and S.G. Parker",
  title =     "Parallel Remote Method Invocation and M-by-N Data
              Redistribution", 
  booktitle = "Proceedings of the 4th Los Alamos Computer Science
              Institute Symposium",
   pages =     "(published on CD)",
  year =      "2003",
  keywords =  "remote visualization, parallel visualization, pse
              problem solving environments, cca", 
  url =       "http://www.sci.utah.edu/publications/damevski03/MxNPaperR.pdf",
}

@InProceedings{SCI:Dam2004a,
  author =    "Kostadin Damevski and Steven Parker",
  title =     "Imprecise Exceptions in Distributed Parallel
              Components", 
  booktitle = c-EUP2004,
  volume =    "3149",
  pages =     "108--116",
  year =      "2004",
  series =    "{Lecture Notes in Computer Science}",
  month =     "August/September",
  keywords =  "CCA, CCTTSS, Univerisity of Utah, , cca, ccttss,
              univerisity of utah", 
}

@InProceedings{SCI:Dam2004b,
  author =    "E. Dam and P.T. Fletcher and S.M. Pizer and G.
              Tracton and J. Rosenman", 
  title =     "Prostate Shape Modeling based on Principal
              Geodesic Analysis Bootstrapping", 
  booktitle = "Medical Image Computing and Computer-Assisted
              Intervention (MICCAI)",
   pages =     "1008--1016",
  year =      "2004",
  url =       "http://www.sci.utah.edu/publications/dam04/MICCAI04_Dam_prostate.pdf",
}

@InProceedings{SCI:Dam2007a,
  author =    "K. Damevski and K. Zhang and S. Parker",
  title =     "Practical Parallel Remote Method Invocation for
              the Babel Compiler", 
  booktitle = "Proceedings of the HPC-GECO/CompFrame'07
              Workshop",
   pages =     "(accepted)",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/damevski07/compf05-damevski.pdf",
}

@InProceedings{SCI:Dam2007b,
  author =    "K. Damevski and A. Swaminathan and S. Parker",
  title =     "Highly Scalable Distributed Component Framework
              for Scientific Computing", 
  booktitle = "Proceedings of the 3rd International Conference on
              High Performance Computing and Communication (HPCC
              2007)",
   pages =     "(accepted)",
  year =      "2007",
  url =       "http://www.sci.utah.edu/publications/damevski07/ccaloop.pdf",
}

@InProceedings{SCI:Dam2007c,
  author =    "K. Damevski and A. Swaminathan and S. Parker",
  title =     "CCALoop: Scalable Design of a Distributed
              Component Framework", 
  booktitle = "Proceedings of the 16th International High
              Performance Distributed Computing Symposium (HPDC
              2007)",
   pages =     "(accepted)",
  year =      "2007",
}

@InProceedings{SCI:Das2004a,
  author =    "R. Das and L. Krishnan and C. Evensen and J.A.
              Weiss", 
  title =     "{MCL} Healing at Early Time Points: Biomechanics
              and Gene Expression", 
  booktitle = c-ORS2004,
  volume =    "29",
  pages =     "892",
  year =      "2004",
  month =     "March",
  location =  "San Francisco, CA",
}

@InProceedings{SCI:Dav2004a,
  author =    "B. Davis and D. Prigent and J. Bechtel and J.
              Rosenman and D.M. Lovelock and S. Joshi", 
  title =     "Accommodating Bowel Gas in Large Deformation Image
              Registration for Adaptive Radiation Therapy of the
              Prostate", 
  booktitle = "Proceedings of AAPM Annual Meeting",
  year =      "2004",
  month =     "July",
  url =       "http://www.sci.utah.edu/publications/davis04/AAPM04-Davis.pdf",
}

@InProceedings{SCI:Dav2004b,
  author =    "B. Davis and P. Lorenzen and S. Joshi",
  title =     "Large Deformation Minimum Mean Squared Error
              Template Estimation for Computational Anatomy", 
  booktitle = "Proceedings of the International Symposium on
              Biomedical Imaging (ISBI)",
   pages =     "173--176",
  year =      "2004",
  month =     "April",
  location =  "Piscataway, NJ",
  url =       "http://www.sci.utah.edu/publications/davis04/ISBI04-Davis-def.pdf",
}

@InProceedings{SCI:Dav2007a,
  author =    "B. Davis and P.T. Fletcher and E. Bullitt and S.
              Joshi", 
  title =     "Population Shape Regression From Random Design
              Data", 
  booktitle = "Proceedings of the Eleventh IEEE International
              Conference on Computer Vision (ICCV '07)",
   pages =     "(accepted)",
  year =      "2007",
}

@Article{SCI:Deb2005a,
  author =    "R.E. Debski and J.A. Weiss and W.J. Newman and
              S.M. Moore and P.J. McMahon", 
  title =     "Stress and Strain in the Anterior Band of the
              Inferior Glenohumeral Ligament During a Simulated
              Clinical Examination", 
  journal =   "Journal of Shoulder and Elbow Surgery",
  volume =    "14",
  pages =     "24S--31S",
  year =      "2005",
  keywords =  "computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/debski05/debski_JSES_AB-IGHL_FEM.pdf",
}

@InProceedings{SCI:Dem2003a,
  author =    "D.E. DeMarle and S.G. Parker and M. Hartner and C.
              Gribble and C.D. Hansen", 
  title =     "Distributed Interactive Ray Tracing for Large
              Volume Visualization", 
  booktitle = "{IEEE} Symposium on Parallel Visualization and
              Graphics",
   pages =     "87--94",
  year =      "2003",
  month =     "October",
  location =  "Seattle, Wa.",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt, Large volume
              visualization, rtrt, scientific visualization,
              large volume visualization", 
  url =       "http://www.sci.utah.edu/publications/demarle03/dirt_vis2003.pdf",
  related-images = "754, 749, 742, 746, 743",
}

@InProceedings{SCI:Dem2004a,
  author =    "D.E. DeMarle and C.P. Gribble and S.G. Parker",
  title =     "Memory-Savvy Distributed Interactive Ray Tracing",
  booktitle = c-EGPGV2004,
  year =      "2004",
  editor =    "Dirk Bartz, Bruno Raffin and Han-Wei Shen",
  keywords =  "rtrt real-time ray tracing, parallel
              visualization, interactive rt distributed
              interactive ray tracing dirt", 
  url =       "http://www.sci.utah.edu/publications/demarle04/epgv_2004.pdf",
}

@Article{SCI:Dem2005a,
  author =    "D.E. DeMarle and C.P. Gribble and S. Boulos and
              S.G. Parker", 
  title =     "Memory Sharing for Interactive Ray Tracing on
              Clusters", 
  journal =   "Parallel Computing",
  volume =    "31",
  number =    "2",
  pages =     "221--242",
  year =      "2005",
  keywords =  "parallel visualization, interactive rt distributed
              interactive ray tracing dirt", 
  url =       "http://www.sci.utah.edu/publications/demarle05/dirt-jpdc04.pdf",
}

@InProceedings{SCI:DeT2001a,
  author =    "C. DeTar and A.L. Fogelson and C.R. Johnson and
              C.A. Sikorski", 
  title =     "Computational Engineering and Science Program at
              the University of Utah", 
  booktitle = c-ICCS2001,
  pages =     "1176--1185",
  year =      "2001",
  editor =    "V. Alexandrov and J. Dongarra and B. Juliano and
              R. Renner and K. Tan", 
  month =     "May",
  location =  "San Francisco",
  keywords =  "scientific computing, scientific visualization,
              pse, problem solving environments, imaging,, ,
              imaging", 
  url =       "http://www.sci.utah.edu/publications/ces01/ces.pdf",
}

@InProceedings{SCI:Det2004a,
  author =    "C. DeTar and A.L. Fogelson and C.R. Johnson and
              C.A. Sikorski and T. Truong", 
  title =     "Computational Engineering and Science Program at
              the University of Utah", 
  booktitle = c-ICCS2004,
  pages =     "1202--1209",
  year =      "2004",
  editor =    "M. Bubak et al",
  series =    "Lecture Notes in Computer Science (LNCS) 3039,
              part 4", 
  keywords =  "computational engineering, ces program,
              computational science, forward problems inverse
              problems forward simulation inverse solutions,
              finite elements, cfd computational fluid dynamics,
              computational mechanics, computational pde pdes
              computational partial differential equations,
              evaporation", 
  url =       "http://www.sci.utah.edu/publications/detar04/ces-iccs04-crj.pdf",
}

@Article{SCI:Dew83a,
  author =    "P.M. Dew and T.F. Buckley M.Berzins",
  title =     "Systolic Architectures for the Iterative Solution
              of Sparse Matrix Problems", 
  journal =   "Parallel Computing",
  year =      "1983",
  editor =    "U. Schendal",
  location =  "North Holland",
}

@TechReport{SCI:Dew83b,
  author =    "P.M. Dew and T.F. Buckley and M. Berzins",
  title =     "Application of {VLSI} Devices to Computational
              Problems in the Gas Industry", 
  number =    "163",
  year =      "1983",
  institution = "The University of Leeds",
  type =      "Dept. of Computer Studies Technical Report",
}

@InProceedings{SCI:Die2006a,
  author =    "A. Dietrich and I. Wald and H. Schmidt and K. Sons
              and P. Slusallek", 
  title =     "Realtime Ray Tracing for Advanced Visualization in
              the Aerospace Industry", 
  booktitle = "Proceedings of the 5th Paderborner Workshop
              Augmented and Virtual Reality in der
              Produktentstehung",
   year =      "2006",
  keywords =  "rtcenter",
  url =       "http://www.sci.utah.edu/publications/dietrich06/aerospace.pdf",
}

@InProceedings{SCI:Dou2003a,
  author =    "C.C. Douglas and M. Cole and Y. Efendiev and R.
              Ewing and V. Ginting and C.R. Johnson and G.M.
              Jones and R. Lazarov and C. Shannon and J.
              Simpson", 
  title =     "Workshop on Dynamic Data-Driven Application
              Systems", 
  booktitle = "ICCS 2003",
  year =      "2003",
  month =     "June 2-3",
  location =  "Melbourne, Australia",
  keywords =  "scirun, pse, problem solving environments, data
              driven", 
  url =       "http://www.sci.utah.edu/publications/douglas03/douglas.pdf",
}

@InProceedings{SCI:Dou2003b,
  author =    "C.C. Douglas and C.E. Shannon and Y. Efendiev and
              R.E. Ewing and V. Ginting and R. Lazanov and M.J.
              Cole and G.M. Jones and C.R. Johnson and J.
              Simpson", 
  title =     "A Note on Dynamic Data Driven Application
              Simulation ({DDDAS}) Using Virtual Telemetry", 
  booktitle = "International Conference on Parallel Algorithms
              and Computing Environments",
   pages =     "pp.193--198",
  year =      "2003",
  keywords =  "scirun, pse, problem solving environments, data
              driven", 
  url =       "http://www.sci.utah.edu/publications/douglas03/icpace2003.pdf",
}

@InProceedings{SCI:Dou2006a,
  author =    "C.C. Douglas and J.C. Harris and M. Iskandarani
              and C.R. Johnson and R.J. Lodder and S.G. Parker
              and M.J. Cole and R. Ewing and Y. Efendiev and R.
              Lazarov and G. Qin", 
  title =     "Dynamic Contaminant Identification in Water",
  booktitle = "Proceedings of Computational Science - ICCS 2006:
              6th International Conference, Part III",
   volume =    "3993",
  pages =     "393--400",
  year =      "2006",
  editor =    "Vassil N. Alexandrov, Geert Dick van Albada, Peter
              M.A. Sloot, Jack J. Dongarra", 
  series =    "Lecture Notes in Computer Science series",
  publisher = "Springer-Verlag Heidelberg",
  location =  "Reading, UK, May 28-31, 2006",
  url =       "http://www.sci.utah.edu/publications/douglas06/sssi-cid.pdf",
}

@Article{SCI:Dur2002a,
  author =    "L.J.K. Durbeck and M. Berzins",
  title =     "Unstructured Tetrahedral Mesh Quality Analysis
              Using an Interactive Haptic and Visual Interface", 
  journal =   j-CVS,
  volume =    "5",
  number =    "3",
  pages =     "179--192",
  year =      "2002",
  publisher = "Springer-Verlag",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, adaptive mesh
              generation, evaporation, atmospherics weather
              meterology, scientific computing", 
  url =       "http://www.sci.utah.edu/publications/ldurbeck02/ldmb.pdf",
}

@InProceedings{SCI:Dur98a,
  author =    "L.J.K Durbeck and N.J. Macias and D.M. Weinstein
              C.R. and J.M. Hollerbach", 
  title =     "{SCIR}un/Haptic Display for Flow Fields",
  booktitle = "Proceedings of the Third {PHANTOM} Users Group
              Workshop",
   pages =     "71--75",
  year =      "1998",
  editor =    "J.K. Salisbury and M.A. Srinivasan",
  series =    "AI Lab Technical Report No. 1643 and {RLE}
              Technical Report No. 624", 
  month =     "Dec",
  keywords =  "scirun, haptic, visual haptic workbench, vr
              virtual reality haptics", 
  url =       "http://www.sci.utah.edu/publications/ldurbeck/pug98.pdf",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/pug98.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/pug98.ps",
}

@InProceedings{SCI:Dur99c,
  author =    "L. Durbeck",
  title =     "Evaporation: A Technique for Visualizing Mesh
              Quality", 
  booktitle = "8th International Meshing Roundtable",
  pages =     "259--265",
  year =      "1999",
  organization = "Sandia National Laboratories",
  organization-url = "http://www.sandia.gov/",
  month =     "Oct",
  keywords =  "computational pde pdes computational partial
              differential equations evaporation, evaporation,
              scirun, atmospherics weather meterology", 
  url =       "http://www.sci.utah.edu/publications/ldurbeck/roundtable.ps.gz",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/roundtable.ps",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/roundtable.pdf",
  url =       "http://www.sci.utah.edu/publications/ldurbeck/evap.zip",
}

@InProceedings{SCI:Ela2001a,
  author =    "V. Elangovan and R. Whitaker",
  title =     "From Sinograms to Surfaces: A Direct Approach to
              Segmenting Tomographic Data", 
  booktitle = c-MICCAI2001,
  pages =     "213--223",
  year =      "2001",
  month =     "October",
  keywords =  "ip image processing signal processing,
              segmentation, surface processing, imaging", 
  url =       "http://www.sci.utah.edu/publications/miccai01/sino_surf.pdf",
}

@Article{SCI:Ell2006a,
  author =    "B.J. Ellis and R.E. Debski and S.M. Moore and P.J.
              McMahon and J.A. Weiss", 
  title =     "Methodology and Sensitivity Studies for Finite
              Element Modeling of the Inferior Glenohumeral
              Ligament Complex", 
  journal =   j-BM,
  volume =    "40",
  number =    "3",
  pages =     "603--612",
  year =      "2006",
  month =     "January",
  keywords =  "finite elements, computational mechanics,
              computational biomechanics, multiscale tissue
              modeling multiscale tissue simulation, mrl", 
  url =       "http://www.sci.utah.edu/publications/ellis06/ellis_jbiomech_2006.pdf",
}

@Article{SCI:Ell2006b,
  author =    "B.J. Ellis and T.J. Lujan and M.S. Dalton and J.A.
              Weiss", 
  title =     "MCL Insertion Site and Contact Forces in the
              ACL-Deficient Knee", 
  journal =   "Journal of Orthopaedic Research",
  volume =    "24",
  number =    "4",
  pages =     "800--810",
  year =      "2006",
  publisher = "Elsevier",
  keywords =  "computational biomechanics, mrl",
  url =       "http://www.sci.utah.edu/publications/ellis06/ellis_jor_2006.pdf",
}

@InProceedings{SCI:Fai2003a,
  author =    "R. Fairlie and C.E. Goodyer and M. Berzins and
              L.E. Scales", 
  title =     "Numerical Modelling of Thermal Effects in
              Elastohydrodynamic Lubrication Solvers", 
  booktitle = "Tribological Research and Design for Engineering
              Systems, Proceedings of the 29th Leeds-Lyon
              Symposium on Tribology",
   pages =     "675--683",
  year =      "2003",
  publisher = "Elsevier",
  keywords =  ", EHL",
}

@InProceedings{SCI:Fle2002a,
  author =    "P.T. Fletcher and S.M. Pizer and G. Gash and S.
              Joshi", 
  title =     "Deformable M-rep segmentation of object
              complexes", 
  booktitle = "Proceedings of the IEEE International Symposium on
              Biomedical Imaging (ISBI)",
   pages =     "26--29",
  year =      "2002",
  url =       "http://www.sci.utah.edu/publications/fletcher02/ISBI02-fletcher-defmrep.pdf",
}

@Article{SCI:Fle2003a,
  author =    "P.T. Fletcher and S. Joshi and C. Lu and S.
              Pizer", 
  title =     "Gaussian Distributions on Lie Groups and Their
              Application to Statistical Shape Analysis", 
  journal =   "Inf Process Med Imaging",
  volume =    "18",
  pages =     "450--462",
  year =      "2003",
  url =       "http://www.sci.utah.edu/publications/fletcher03/IPMI03_Fletcher_GausDist.pdf",
}

@InProceedings{SCI:Fle2003b,
  author =    "P.T. Fletcher and C. Lu and S. Joshi",
  title =     "Statistics of Shape via Principal Component
              Analysis on Lie Groups", 
  booktitle = "Proceedings of the Conference on Computer Vision
              and Pattern Recognition (CVPR)",
   pages =     "95--101",
  year =      "2003",
  month =     "June",
  location =  "Los Alamitos, CA",
  url =       "http://www.sci.utah.edu/publications/fletcher03/CVPR03_Fletcher_StatsShape.pdf",
}

@Article{SCI:Fle2004a,
  author =    "P.T. Fletcher and C. Lu and S.M. Pizer and S.
              Joshi", 
  title =     "Principal Geodesic Analysis for the Study of
              Nonlinear Statistics of Shape", 
  journal =   "IEEE Trans Med Imaging",
  volume =    "23",
  number =    "8",
  pages =     "995--1005",
  year =      "2004",
  month =     "August",
  url =       "http://www.sci.utah.edu/publications/fletcher04/TMI04_Fletcher_PGA.pdf",
}

@Article{SCI:Fle2004b,
  author =    "P.T. Fletcher and S. Joshi",
  title =     "Principal Geodesic Analysis on Symmetric Spaces:
              Statistics of Diffusion Tensors", 
  journal =   "Computer Vision and Mathematical Methods in
              Medical and Biomedical Image Analysis",
   volume =    "3117",
  pages =     "87--98",
  year =      "2004",
  series =    "Springer-Verlag, Lecture Notes In Computer
              Science", 
  url =       "http://www.sci.utah.edu/publications/fletcher04/CVAMIA04_Fletcher_DTStats.pdf",
}

@PhdThesis{SCI:Fle2004c,
  author =    "P.T. Fletcher",
  title =     "Statistical Variability in Nonlinear Spaces:
              Application to Shape Analysis and DT-MRI", 
  year =      "2004",
  school =    "University of North Carolina Department of
              Computer Science", 
  month =     "August",
  note =      "Ph.D. Thesis",
  url =       "http://www.sci.utah.edu/publications/fletcher04/fletcher_thesis.pdf",
}

@InBook{SCI:Fle2006a,
  author =    "P.T. Fletcher and S.M. Pizer and S. Joshi",
  title =     "Shape Variation of Medial Axis Representations via
              Principal Geodesic Analysis on Symmetric Spaces", 
  booktitle = "Statistics and Analysis of Shapes",
  pages =     "29--60",
  year =      "2006",
  editor =    "H. Krim and A. Yezzi",
  chapter =   "2",
  publisher = "Birkhauser",
}

@InProceedings{SCI:Fle2006b,
  author =    "P.T. Fletcher and R.T. Whitaker",
  title =     "Riemannian Metrics on the Space of Solid Shapes",
  booktitle = "MICCAI Workshop on Mathematical Foundations of
              Computational Anatomy",
   year =      "2006",
  month =     "October",
  url =       "http://www.sci.utah.edu/publications/fletcher06/FletcherMFCA2006.pdf",
}

@Article{SCI:Fle2007a,
  author =    "P.T. Fletcher and S. Joshi",
  title =     "Riemannian Geometry for the Statistical Analysis
              of Diffusion Tensor Data", 
  journal =   "Signal Processing",
  volume =    "87",
  number =    "2",
  pages =     "250--262",
  year =      "2007",
  month =     "February",
  keywords =  "diffusion tensor, ",
  url =       "http://www.sci.utah.edu/publications/fletcher07/FletcherTensorStatsSP.pdf",
}

@Article{SCI:Fle2007b,
  author =    "P.T. Fletcher and R. Tao and W.-K. Jeong and R.T.
              Whitaker", 
  title =     "A Volumetric Approach to Quantifying
              Region-to-Region White Matter Connectivity in
              Diffusion Tensor MRI", 
  journal =   "Information Processing in Medical Imaging",
  pages =     "(accepted)",
  year =      "2007",
  keywords =  "tensor field methods, diffusion tensor imaging,
              neuro brain", 
}

@InProceedings{SCI:For2000a,
  author =    "A. Forsberg and R.M. Kirby and D.H. Laidlaw and
              G.E. Karniadakis and A. van Dam and J. Elion", 
  title =     "Immersive Virtual Reality for Visualizing Flow
              Through an Artery", 
  booktitle = "Proceedings of IEEE Visualization 2000",
  pages =     "457--460",
  year =      "2000",
  month =     "October",
  location =  "Salt Lake City, UT",
}

@Article{SCI:For92a,
  author =    "D. Forslunk and P. Hinker and C.D. Hansen and
              W.St. John and S. Tenbrink and J. Brewton", 
  title =     "High-speed Networks, Visualization and Massive
              Parallelism in the Advanced Computing Laboratory", 
  journal =   "Computing Systems in Engineering",
  volume =    "3",
  number =    "1-4",
  year =      "1992",
}

@Article{SCI:Fos2005a,
  author =    "M. Foskey and B. Davis and L. Goyal and S. Chang
              and E. Chaney and N. Strehl and S. Tomei and J.
              Rosenman and S. Joshi", 
  title =     "Large Deformation Three-Dimensional Image
              Registration in Image-Guided Radiation Therapy", 
  journal =   "Phys Med Biol",
  volume =    "50",
  number =    "24",
  pages =     "5869--5892",
  year =      "2005",
  month =     "December 21",
  url =       "http://www.sci.utah.edu/publications/foskey05/Foskey05_submission.pdf",
}

@InProceedings{SCI:Fou2005a,
  author =    "N. Fout and H. Akiba and K-L. Ma and A.E. Lefohn
              and J.M. Kniss", 
  title =     "High-Quality Rendering of Compressed Volume Data
              Formats", 
  booktitle = "Proceedings of The Joint EUROGRAPHICS-IEEE VGTC
              Symposium on Visualization 2005",
   year =      "2005",
  keywords =  "scalar field methods, volume rendering",
  url =       "http://www.sci.utah.edu/publications/fout05/fout_eurovis05.pdf",
}

@Article{SCI:Fra1993a,
  author =    "E.P. France and J.A. Weiss and L.E. Paulos",
  title =     "Allograft Ligament Reconstruction: Biomechanical
              Issues and Testing", 
  journal =   "Sports Medicine and Arthroscopy Review",
  volume =    "1",
  pages =     "47--60",
  year =      "1993",
}

@InProceedings{SCI:Fre2006a,
  author =    "J. Freire and C.T. Silva and S.P. Callahan and E.
              Santos and C.E. Scheidegger and H.T. Vo", 
  title =     "Managing Rapidly-Evolving Scientific Workflows",
  booktitle = "Proceedings of The 2006 International Provenance
              and Annotation Workshop",
   pages =     "(to appear)",
  year =      "2006",
  keywords =  "scirun, pse pses problem solving envoronment,
              vistrails, provenance", 
  url =       "http://www.sci.utah.edu/publications/freire06/ipaw2006.pdf",
}

@InProceedings{SCI:Fre2008a,
  author =    "J. Freire and C. Silva",
  title =     "Towards Enabling Social Analysis of Scientific
              Data", 
  booktitle = "Proceedings of CHI Social Data Analysis Workshop
              2008",
   pages =     "(to appear)",
  year =      "2008",
}

@InProceedings{SCI:Fri2007a,
  author =    "H. Friedrich and I. Wald and P. Slusallek",
  title =     "Interactive Iso-Surface Ray Tracing of Massive
              Volumetric Data Sets", 
  booktitle = "Proceedings of the 2007 Eurographics Symposium on
              Parallel Graphics and Visualization",
   pages =     "(accepted)",
  year =      "2007",
  keywords =  "volume rendering, parallel visualization,
              interactive rt distributed interactive ray tracing
              dirt, rtcenter, large dataset visualization", 
  url =       "http://www.sci.utah.edu/publications/friedrich07/async.pdf",
}

@Misc{SCI:Fusion,
  year =      "2008",
  note =      "FusionView: Problem Solving Environment for MHD
              Visualization. Scientific Computing and Imaging
              Institute (SCI), Download from:
              http://software.sci.utah.edu/fusion.html", 
  keywords =  "fusion",
  url =       "http://software.sci.utah.edu/fusion.html",
}

@Article{SCI:Gar2001a,
  author =    "J.C. Gardiner and J.A. Weiss and T.D. Rosenberg",
  title =     "Strain in the Human Medial Collateral Ligament
              During Valgus Loading", 
  journal =   "Clinical Orthopaedics and Related Research",
  volume =    "391",
  pages =     "266--274",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/gardiner01/mclstrain_clinorthop.pdf",
}

@Article{SCI:Gar2001b,
  author =    "J.C. Gardiner and J.A. Weiss",
  title =     "Simple Shear Testing of Parallel-Fibered Planar
              Soft Tissues", 
  journal =   "Journal of Biomechanical Engineering",
  volume =    "123",
  pages =     "1--5",
  year =      "2001",
  url =       "http://www.sci.utah.edu/publications/gardiner01/JBMEshear.pdf",
}

@Article{SCI:Gar2003a,
  author =    "J.C. Gardiner and J.A. Weiss",
  title =     "Subject-Specific Finite Element Analysis of the
              Human Medial Collateral Ligament During Valgus Knee
              Loading", 
  journal =   "Journal of Orthopaedic Research",
  volume =    "21",
  pages =     "1098--1106",
  year =      "2003",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              finite elements, forward problems inverse problems
              forward simulation inverse solutions, computational
              biomechanics, ip image processing signal
              processing, segmentation", 
  url =       "http://www.sci.utah.edu/publications/gardiner03/gardiner_jor_2003.pdf",
}

@InProceedings{SCI:Gar2004a,
  author =    "C. Garth and X. Tricoche and G. Scheuermann",
  title =     "Tracking of Vector Field Singularities in
              Unstructured 3D Time-Dependent Datasets", 
  booktitle = c-VIS2004,
  booktitle-url = "http://vis.computer.org/vis2004/",
  pages =     "329--336",
  year =      "2004",
  keywords =  "cfd computational fluid dynamics, vector field
              methods, Poincare index, time dependent topology,
              poincare index, ncrr", 
  url =       "http://www.sci.utah.edu/publications/garth04/tracking3d.pdf",
  related-images = "72",
}

@InProceedings{SCI:Gar2004b,
  author =    "C. Garth and X. Tricoche and T. Salzbrunn and T.
              Bobach and G. Scheuermann", 
  title =     "Surface Techniques for Vortex Visualization",
  booktitle = "Proceedings of Joint Eurographics - {IEEE} {TCVG}
              Symposium on Visualization",
   pages =     "155--164",
  year =      "2004",
  month =     "May",
  keywords =  "cfd computational fluid dynamics, computational
              mechanics, fluid structure problems, aerodynamics,
              ncrr", 
  url =       "http://www.sci.utah.edu/publications/garth04/vissym04.pdf",
  related-images = "57, 61",
}

@InProceedings{SCI:Gar2006a,
  author =    "C. Garth and B. Laramee and X. Tricoche and H.
              Hauser and J. Schneider", 
  title =     "Extraction and Visualization of Swirl and Tumble
              Motion from Engine Simulation Data", 
  booktitle = "Proceedings of TopoInVis, Seminar on
              Topology-based Methods in Visualization",
   pages =     "(to appear)",
  year =      "2006",
}

@InProceedings{SCI:Gar2007a,
  author =    "C. Garth and G. Li and X. Tricoche and C.D. Hansen
              and H. Hagen", 
  title =     "Visualization of Coherent Structures in Transient
              Flows", 
  booktitle = "Proceedings of the 2007 Workshop on Topology-Based
              Method in Visualization (TopoInVis)",
   year =      "2007",
  month =     "March",
  location =  "Grimma, Germany",
  keywords =  "csafe c-safe",
}

@InProceedings{SCI:Gar2007b,
  author =    "C. Garth and F. Gerhardt and X. Tricoche and H.
              Hagen", 
  title =     "Efficient Computation and Visualization of
              Coherent Structures in Fluid Flow Applications", 
  booktitle = "Proceeding of IEEE Visualization 2007",
  pages =     "1464--1471",
  year =      "2007",
  keywords =  "vacet, cfd computational fluid dynamics,
              aerodynamics", 
  url =       "http://www.sci.utah.edu/publications/garth07/garth-vis07.pdf",
  related-images = "51, 66, 70, 56, 53",
}

@InProceedings{SCI:Gen2005a,
  author =    "S.E. Geneser and S. Choe and R.M. Kirby and R.S.
              MacLeod", 
  title =     "Influence of Organ Conductivity in ECG Forward
              Modeling: A Sensitivity Study Using 2D Stochastic
              Finite Elements", 
  booktitle = c-BEMNFSI2005,
  pages =     "(accepted)",
  year =      "2005",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, forward simulation,
              cardiac heart, ncrr", 
}

@Article{SCI:Gen2007a,
  author =    "S.E. Geneser and R.M. Kirby and D. Xiu and F.B.
              Sachse", 
  title =     "Stochastic Markovian Modeling of Electrophysiology
              of Ion Channels: Reconstruction of Standard
              Deviations in Macroscopic Currents", 
  journal =   "Journal of Theoretical Biology",
  volume =    "245",
  number =    "4",
  pages =     "627--637",
  year =      "2007",
  keywords =  "computational biomechanics",
  url =       "http://www.sci.utah.edu/publications/geneser07/Kirby-20.pdf",
}

@Article{SCI:Gen2007b,
  author =    "S.E. Geneser and R.M. Kirby and R.S. MacLeod",
  title =     "Application of Stochastic Finite Element Methods
              to Study the Sensitivity of ECG Forward Modeling to
              Organ Conductivity", 
  journal =   "IEEE Transactions on Biomedical Engineering",
  pages =     "(accepted)",
  year =      "2007",
  keywords =  "finite elements, forward simulation",
}

@Article{SCI:Gen2008a,
  author =    "S.E. Geneser and R.M. Kirby",
  title =     "Application of Stochastic Finite Element Methods
              to Study the Sensitivity of ECG Forward Modeling to
              Organ Conductivity", 
  journal =   "{IEEE} Transations on Biomedical Engineering",
  volume =    "55",
  number =    "1",
  pages =     "31--40",
  year =      "2008",
  month =     "January",
  url =       "http://www.sci.utah.edu/publications/geneser08/geneser08-ieee-bme.pdf",
}

@InProceedings{SCI:Ger2000a,
  author =    "J.D. de St. Germain and J. McCorquodale and S.G.
              Parker and C.R. Johnson", 
  title =     "Uintah: A Massively Parallel Problem Solving
              Environment", 
  booktitle = "Ninth {IEEE} International Symposium on High
              Performance and Distributed Computing",
   booktitle-url = "http://www.cs.cmu.edu/~hpdc/",
  pages =     "33--41",
  year =      "2000",
  publisher = "{IEEE}, Piscataway, NJ",
  month =     "Nov",
  keywords =  "scirun, uintah, csafe",
  url =       "http://www.sci.utah.edu/publications/dav00/uintah-hpdc00.pdf",
}

@InProceedings{SCI:Ger2002a,
  author =    "J.D. de St. Germain and A. Morris and S.G. Parker
              and A.D. Malony and S. Shende", 
  title =     "Integrating Performance Analysis in the Uintah
              Software Development Cycle", 
  booktitle = c-ISHPC2002,
  pages =     "190--206",
  year =      "2002",
  month =     "May 15-17",
  keywords =  "scirun, uintah, csafe, csafe c-safe, problem
              solving environments, pse", 
  url =       "http://www.sci.utah.edu/publications/dav02/ishpc2002.pdf",
}

@InProceedings{SCI:Ger2003a,
  author =    "J.D. de St. Germain and S.G. Parker",
  title =     "Software Integration in an Academic Environment",
  booktitle = "Software Quality Forum (SQF)",
  pages =     "(published on CD)",
  year =      "2003",
  month =     "March",
  location =  "Arlington, Virginia",
  keywords =  "SCIRun, scirun, biopse, uintah, scirun fusion,
              scirun insight, csafe c-safe, PSE, software
              integration, problem solving environments, pse", 
}

@Article{SCI:Ger2003b,
  author =    "J.D. de St. Germain and A. Morris and S.G. Parker
              and A.D. Malony and S. Shende", 
  title =     "Performance Analysis Integration in the Uintah
              Software Development Cycle", 
  journal =   "International Journal of Parallel Programming",
  volume =    "31",
  number =    "1",
  pages =     "35--53",
  year =      "2003",
  keywords =  "uintah",
  url =       "http://www.sci.utah.edu/publications/dav03/ijpp03.pdf",
}

@InProceedings{SCI:Ger2006a,
  author =    "G. Gerig and B. Davis and P. Lorenzen and S. Xu
              and M. Jomier and J. Piven and S. Joshi", 
  title =     "Computational Anatomy to Assess Longitudinal
              Trajectory of Brain Growth", 
  booktitle = "Proceedings of The Third International Symposium
              on 3D Data Processing, Visualization, and
              Transmission",
   pages =     "1041--1047",
  year =      "2006",
  month =     "June",
  url =       "http://www.sci.utah.edu/publications/gerig06/CompAnat-3dpvt-Gerig-final.pdf",
}

@InProceedings{SCI:Ger2006b,
  author =    "G. Gerig and S. Joshi and P.T. Fletcher and K.
              Gorczowski and S. Xu and S.M. Pizer and M. Styner",
              
  title =     "Statistics of Populations of Images and its
              Embedded Objects: Driving Applications in
              Neuroimaging", 
  booktitle = "Proceedings of IEEE International Symposium on
              Biomedical Imaging (ISBI)",
   pages =     "1120--1123",
  year =      "2006",
  month =     "April",
  url =       "http://www.sci.utah.edu/publications/gerig06/ISBI06_Gerig.pdf",
}

@InProceedings{SCI:Ger2007a,
  author =    "S. Gerber and T. Tasdizen and R. Whitaker",
  title =     "Robust Non-linear Dimensionality Reduction using
              Successive 1-Dimensional Laplacian Eigenmaps", 
  booktitle = "Proceedings of the 2007 International Conference
              on Machine Learning (ICML)",
   pages =     "(accepted)",
  year =      "2007",
  keywords =  "crcns, ,  crcns",
  url =       "http://www.sci.utah.edu/publications/gerber07/Gerber_ICML2007.pdf",
}

@InProceedings{SCI:Gha93a,
  author =    "P.B. Gharpure and C.R. Johnson",
  title =     "A 3D Cellular Automata Model of the Heart",
  booktitle = "{IEEE} Engineering in Medicine and Biology Society
              15th Annual International Conference",
   pages =     "752--753",
  year =      "1993",
  publisher = "{IEEE} Press",
  keywords =  "scalar field methods, cardiac heart",
}

@TechReport{SCI:Gha95,
  author =    "P. Gharpure and C.R. Johnson",
  title =     "A Cellular Automaton Model of Electrical
              Activation in Canine Ventricles: A Validation
              Study", 
  number =    "UUSCI-1995-002",
  year =      "1995",
  institution = "University of Utah",
  type =      "{SCI} Institute Technical Report",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions finite elements,
              cardiac heart", 
  url =       "http://www.sci.utah.edu/publications/SCITechReports/UUSCI-1995-002.pdf",
}

@Article{SCI:Gho2000a,
  author =    "S. Ghorai and A.S. Tomlin and M. Berzins",
  title =     "Resolution of pollutant concentrations in the
              boundary layer using a fully 3-D adaptive gridding
              technique", 
  journal =   "Atmospheric Environment",
  volume =    "34",
  number =    "18",
  pages =     "2851-2863",
  year =      "2000",
}

@InProceedings{SCI:Gho2004a,
  author =    "A. Ghodrati and D.H. Brooks and R.S. MacLeod",
  title =     "On Selecting and Using Reduced Sets of Leads for
              Electrocardiographic Imaging Using
              Reconstruction-Quality Criteria", 
  booktitle = "Proceedings of The SIAM Conference on Imaging
              Science 2004",
   year =      "2004",
  month =     "May",
  location =  "Salt Lake City, UT",
  note =      "abstract.",
  keywords =  "ncrr",
}

@InProceedings{SCI:Gho2004b,
  author =    "A. Ghodrati and F. Calderero and D.H. Brooks and
              G. Tadmor and R.S. MacLeod", 
  title =     "A Level Sets Algorithm for the Inverse Problem of
              Electrocardiography", 
  booktitle = "Proceedings of the Asilomar Conf. on Sig. and
              Sys.",
   pages =     "(in press)",
  year =      "2004",
  month =     "November",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr", 
}

@InProceedings{SCI:Gho2005a,
  author =    "A. Ghodrati and D.H. Brooks and G. Tadmor and B.B.
              Punske and R.S. MacLeod", 
  title =     "Wavefront-based Inverse Electrocardiography using
              an Evolving Curve State Vector and Phenomenological
              Propagation and Potential Models", 
  booktitle = c-BEMNFSI2005,
  volume =    "7",
  number =    "2",
  pages =     "210--213",
  year =      "2005",
  keywords =  "cardiac heart, ncrr, cibc",
}

@Article{SCI:Gho2006a,
  author =    "A. Ghodrati and D.H. Brooks and G. Tadmor and R.S.
              MacLeod", 
  title =     "Wavefront-based Models for Inverse
              Electrocardiography", 
  journal =   j-BME,
  volume =    "53",
  number =    "9",
  pages =     "1821--1831",
  year =      "2006",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr, cibc simulation
              math modeling", 
}

@Article{SCI:Gho2006b,
  author =    "A. Ghodrati and D.H. Brooks and G. Tadmor and R.S.
              MacLeod", 
  title =     "Lead Selection for Inverse Electrocardiography",
  journal =   j-BME,
  pages =     "in press",
  year =      "2006",
  keywords =  "forward problems inverse problems forward
              simulation inverse solutions, ncrr", 
}

@Conference{SCI:Gho2006c,
  author =    "A. Ghodrati and A. Keely and G. Tadmor and R.S.
              MacLeod and D.H. Brooks", 
  title =     "A Wavefront-Based Constraint for Potential Surface
              Solutions in Inverse Electrocardiography", 
  booktitle = "Proceedings of the 26th Annual International
              Conference of the IEEE EMBS",
   volume =    "53",
  number =    "9",
  pages =     "1821--1831",
  year =      "2006",
  address =   "New York, NY, USA",
  month =     "August",
  keywords =  "forward problems