CIBC Publications - NIH Center for Integrative Biomedical Computing at the Scientific Computing and Imaging Institute

NCRR CIBC Publications

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[Complete SCI Publications Bibtex] [SCIRun Publications] [SCI Technical Reports]

Please acknowledge the CIBC and/or use of SCIRun and BioPSE in your papers and reports:
[bibtex citation] [Endnote citation]
[CIBC acknowledgment]

"This work was made possible in part by software from the NIH/NCRR Center for Integrative Biomedical Computing, P41-RR12553-07."

2008

[bibtex]
Note: BioFEM: A SCIRun PowerApp that computes the electric field in a volume produced by a set of dipoles. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008. Versions Available: [html]

[bibtex]
Note: BioImage: A SCIRun Power App for processing and visualizing medical image volumes. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/index.html, 2008. Versions Available: [html]

[bibtex]
Note: BioPSE: Problem Solving Environment for modeling, simulation, image processing, and visualization for biomedical computing applications. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008. Versions Available: [html]

[bibtex]
Note: BioTensor: A SCIRun Power App for processing and visualizing diffusion tensor images. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008. Versions Available: [html]

[bibtex]
Note: Data Sets: NCRR Center for Integrative Biomedical Computing (CIBC) data set archive. Download from: http://www.sci.utah.edu/cibc/software/login_datasets.html, 2008. Versions Available: [html]

[bibtex]
M. Jolley, J. Stinstra, S. Pieper, R.S. MacLeod, D.H. Brooks, F. Cecchin, J.K. Triedman. “A Computer Modeling Tool for Comparing Novel ICD Electrode Orientations in Children and Adults,” In Heart Rhythm, Vol. 5, No. 4, pp. 565--572. April, 2008. Versions Available: [pdf]

[bibtex]
Note: map3d: Interactive scientific visualization tool for bioengineering data. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/map3d.html, 2008. Versions Available: [html]

[bibtex]
A.R. Sanderson, M.D. Meyer, R.M. Kirby, C.R. Johnson. “A Framework for Exploring Numerical Solutions of Advection-Reaction-Diffusion Equations Using a GPU-Based Approach,” In Computing and Visualization in Science, published online, 2008.
ISSN: 1432-9360 Versions Available: [pdf]

[bibtex]
Note: SCIRun: A Scientific Computing Problem Solving Environment, Scientific Computing and Imaging Institute (SCI), Download from: http://software.sci.utah.edu/scirun.html, 2008. Versions Available: [html]

[bibtex]
Note: Seg3D: Volumetric Image Segmentation and Visualization. Scientific Computing and Imaging Institute (SCI), Download from: http://www.sci.utah.edu/cibc/software/, 2008. Versions Available: [html]

[bibtex]
X. Tricoche, R. MacLeod, C.R. Johnson. “Visual Analysis of Bioelectric Fields,” In Visualization in Medicine and Life Sciences, Mathematics and Visualization, Springer-Verlag, pp. 205--220. 2008. Versions Available: [pdf]

[bibtex]
S.X. Vasquez, M.S. Hansen, A.N. Bahadur, M.F. Hockin, G.L. Kindlmann, L. Nevell, I.Q. Wu, D.J. Grunwald, D.M. Weinstein, G.M. Jones, C.R. Johnson, J.L. Vandeberg, M.R. Capecchi, C. Keller. “Optimization of Volumetric Computed Tomography for Skeletal Analysis of Model Genetic Organisms,” In The Anatomical Record: Advances in Integrative Anatomy and Evolutionary Biology, Vol. 291, pp. 475--487. 2008. Versions Available: [pdf]